Wall clock time and date at job start Wed Apr 1 2020 01:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46489 * 120.00051 * 2 1 4 4 C 1.50706 * 109.47499 * 275.00002 * 3 2 1 5 5 H 1.08003 * 119.98953 * 359.97438 * 4 3 2 6 6 C 1.37870 * 120.00408 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99852 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00096 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47493 * 89.99644 * 8 6 4 10 10 H 1.48500 * 109.47046 * 209.99973 * 8 6 4 11 11 H 1.48497 * 109.46983 * 329.99552 * 8 6 4 12 12 S 1.65606 * 119.99819 * 179.97438 * 2 1 3 13 13 O 1.42105 * 106.40008 * 156.45998 * 12 2 1 14 14 O 1.42098 * 106.40370 * 23.54183 * 12 2 1 15 15 N 1.65595 * 107.22013 * 269.99910 * 12 2 1 16 16 C 1.46933 * 120.62849 * 90.00117 * 15 12 2 17 17 C 1.53192 * 108.77332 * 233.58481 * 16 15 12 18 18 C 1.53034 * 109.31802 * 305.36774 * 17 16 15 19 19 C 1.53036 * 109.53843 * 61.36294 * 18 17 16 20 20 H 1.08999 * 109.49828 * 58.58829 * 19 18 17 21 21 C 1.50700 * 109.50091 * 178.65543 * 19 18 17 22 22 N 1.30500 * 125.65156 * 59.68822 * 21 19 18 23 23 C 1.34127 * 109.25876 * 179.89856 * 22 21 19 24 24 C 1.34664 * 108.01922 * 0.37188 * 23 22 21 25 25 N 1.35045 * 125.65076 * 240.00676 * 21 19 18 26 26 C 1.46499 * 126.39548 * 359.93545 * 25 21 19 27 27 C 1.46925 * 120.63264 * 269.72636 * 15 12 2 28 28 H 1.08999 * 109.47095 * 270.00091 * 1 2 3 29 29 H 1.08991 * 109.46942 * 30.00504 * 1 2 3 30 30 H 1.09009 * 109.46796 * 150.00143 * 1 2 3 31 31 H 1.09000 * 109.47424 * 35.00059 * 3 2 1 32 32 H 1.08996 * 109.47539 * 154.99888 * 3 2 1 33 33 H 0.97003 * 119.99643 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.58440 * 353.37472 * 16 15 12 35 35 H 1.08998 * 109.58455 * 113.79928 * 16 15 12 36 36 H 1.09000 * 109.49465 * 65.32133 * 17 16 15 37 37 H 1.09001 * 109.49513 * 185.41383 * 17 16 15 38 38 H 1.09000 * 109.46385 * 181.38945 * 18 17 16 39 39 H 1.09002 * 109.45550 * 301.35984 * 18 17 16 40 40 H 1.08004 * 125.98782 * 180.11919 * 23 22 21 41 41 H 1.07999 * 126.59533 * 179.81409 * 24 23 22 42 42 H 1.08996 * 109.47436 * 90.00270 * 26 25 21 43 43 H 1.09004 * 109.46789 * 210.00261 * 26 25 21 44 44 H 1.08992 * 109.47278 * 329.99762 * 26 25 21 45 45 H 1.09004 * 109.58173 * 246.20142 * 27 15 12 46 46 H 1.08999 * 109.58418 * 6.62073 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3415 1.7657 -1.4154 5 1 1.9289 1.1934 -2.2332 6 6 2.9998 2.9508 -1.6664 7 7 3.1258 3.3842 -2.9017 8 14 3.7139 3.9402 -0.2520 9 1 5.1112 3.5054 0.0005 10 1 3.6999 5.3836 -0.6009 11 1 2.8982 3.7182 0.9689 12 16 2.2930 -1.4342 0.0006 13 8 3.5760 -1.1571 -0.5439 14 8 1.4114 -2.4068 -0.5434 15 7 2.5381 -1.8581 1.5826 16 6 1.5540 -2.6818 2.2980 17 6 1.1559 -1.9628 3.5908 18 6 2.4146 -1.6426 4.4001 19 6 3.3213 -0.7132 3.5901 20 1 2.7801 0.2009 3.3459 21 6 4.5449 -0.3719 4.4009 22 7 5.4137 -1.2285 4.8640 23 6 6.3701 -0.5697 5.5351 24 6 6.0785 0.7444 5.4931 25 7 4.9208 0.8704 4.7737 26 6 4.2205 2.1197 4.4654 27 6 3.7467 -1.4226 2.2956 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5139 31 1 1.6502 2.0042 0.5894 32 1 3.1857 1.1177 0.4343 33 1 3.5893 4.2179 -3.0782 34 1 0.6727 -2.8238 1.6725 35 1 1.9936 -3.6497 2.5386 36 1 0.6351 -1.0370 3.3465 37 1 0.4999 -2.6059 4.1775 38 1 2.1323 -1.1530 5.3322 39 1 2.9481 -2.5668 4.6226 40 1 7.2221 -1.0154 6.0268 41 1 6.6488 1.5450 5.9404 42 1 3.4991 2.3359 5.2533 43 1 4.9421 2.9341 4.4000 44 1 3.6995 2.0188 3.5134 45 1 4.3615 -2.2900 2.5361 46 1 4.3126 -0.7336 1.6686 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443960621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:38 Heat of formation + Delta-G solvation = -6.307107 kcal Electronic energy + Delta-G solvation = -30014.445948 eV Core-core repulsion = 26067.278147 eV Total energy + Delta-G solvation = -3947.167801 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.21857 -38.47580 -36.77992 -35.67557 -35.23809 -34.10774 -32.99444 -32.44412 -31.75413 -28.59233 -28.42691 -27.08847 -25.24963 -24.49931 -23.78675 -21.95976 -21.66984 -20.81197 -19.36800 -18.48636 -17.54397 -17.19927 -16.92527 -16.64303 -16.01546 -15.69839 -15.07027 -14.77228 -14.62217 -14.28906 -14.08345 -13.76658 -13.63507 -13.55834 -13.45183 -13.15954 -12.99913 -12.87901 -12.59687 -12.55075 -12.42383 -11.80325 -11.74960 -11.48837 -11.44105 -11.39581 -11.29026 -11.07261 -10.86878 -10.73697 -10.63891 -10.50482 -10.31492 -10.02697 -9.68409 -9.62222 -9.01111 -8.66662 -8.41072 -8.16228 -6.14672 -4.13852 1.05223 1.94138 2.65906 3.06884 3.14667 3.18535 3.23505 3.35863 3.97212 4.24078 4.29308 4.51312 4.59905 4.67245 4.79399 4.86292 4.90140 4.93039 5.07796 5.13601 5.17337 5.22004 5.30228 5.37973 5.42335 5.54430 5.58560 5.70418 5.77290 5.81500 5.87114 5.93318 5.94704 6.10469 6.16768 6.24373 6.29688 6.38338 6.56079 6.67537 6.69134 7.00354 7.05508 7.34269 7.50750 8.03664 8.42836 8.91253 9.43844 10.99190 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.009481 B = 0.005780 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.686814 B = 4843.219742 C = 6858.015157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.991 5.991 3 C 0.230 3.770 4 C -0.531 4.531 5 H 0.078 0.922 6 C 0.073 3.927 7 N -0.893 5.893 8 Si 0.869 3.131 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.266 1.266 12 S 2.779 3.221 13 O -0.958 6.958 14 O -0.989 6.989 15 N -1.011 6.011 16 C 0.121 3.879 17 C -0.134 4.134 18 C -0.099 4.099 19 C -0.017 4.017 20 H 0.088 0.912 21 C 0.215 3.785 22 N -0.484 5.484 23 C -0.029 4.029 24 C -0.061 4.061 25 N -0.456 5.456 26 C 0.064 3.936 27 C 0.137 3.863 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.024 0.976 33 H 0.265 0.735 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.169 0.831 41 H 0.173 0.827 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.733 -5.462 19.970 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.833 5.833 3 C 0.106 3.894 4 C -0.570 4.570 5 H 0.096 0.904 6 C -0.129 4.129 7 N -0.531 5.531 8 Si 0.696 3.304 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.191 1.191 12 S 2.788 3.212 13 O -0.942 6.942 14 O -0.973 6.973 15 N -0.849 5.849 16 C -0.005 4.005 17 C -0.173 4.173 18 C -0.137 4.137 19 C -0.039 4.039 20 H 0.106 0.894 21 C -0.048 4.048 22 N -0.203 5.203 23 C -0.177 4.177 24 C -0.194 4.194 25 N -0.138 5.138 26 C -0.078 4.078 27 C 0.010 3.990 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.186 0.814 41 H 0.190 0.810 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.102 0.898 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.483 -6.496 18.934 20.072 hybrid contribution 0.533 2.081 1.148 2.436 sum -0.949 -4.415 20.082 20.584 Atomic orbital electron populations 1.21375 0.79678 1.03916 1.00175 1.57476 1.14508 1.22544 1.88762 1.19385 0.90501 0.80874 0.98613 1.21380 1.36831 1.06953 0.91871 0.90361 1.24870 0.95415 0.97204 0.95449 1.69893 1.42440 1.21991 1.18788 0.86961 0.80293 0.79950 0.83181 1.19813 1.20871 1.19065 1.02147 0.73524 0.72852 0.72718 1.93635 1.40410 1.84812 1.75317 1.93526 1.67334 1.60027 1.76368 1.58523 1.29055 1.65056 1.32276 1.21382 0.91758 0.93740 0.93590 1.21944 0.97413 1.01432 0.96486 1.21414 0.95227 0.99794 0.97294 1.20069 0.89868 1.00121 0.93881 0.89373 1.23049 0.99231 0.79961 1.02522 1.70193 1.03734 1.32243 1.14086 1.22275 1.00557 0.90417 1.04473 1.22691 0.91687 1.00085 1.04925 1.45325 1.20284 1.08008 1.40231 1.22150 0.98243 0.84240 1.03199 1.21388 0.86004 0.99905 0.91717 0.94226 0.90195 0.91289 0.95073 0.95816 0.92480 0.89253 0.91092 0.91257 0.90480 0.91997 0.90399 0.81400 0.81012 0.90281 0.89299 0.88976 0.89816 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.51 10.68 59.85 0.64 2.15 16 2 N -0.99 -19.36 3.23 -123.06 -0.40 -19.76 16 3 C 0.23 5.16 4.15 -5.20 -0.02 5.13 16 4 C -0.53 -14.79 9.94 -34.44 -0.34 -15.14 16 5 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.89 -27.04 13.96 55.43 0.77 -26.26 16 8 Si 0.87 20.08 27.47 -169.99 -4.67 15.41 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -5.44 6.54 56.52 0.37 -5.07 16 12 S 2.78 54.31 6.06 -107.50 -0.65 53.66 16 13 O -0.96 -22.74 15.82 -57.17 -0.90 -23.64 16 14 O -0.99 -20.26 15.46 -57.17 -0.88 -21.14 16 15 N -1.01 -15.02 3.34 -113.27 -0.38 -15.39 16 16 C 0.12 1.39 6.38 -3.71 -0.02 1.37 16 17 C -0.13 -1.24 6.08 -26.61 -0.16 -1.40 16 18 C -0.10 -1.01 5.15 -26.69 -0.14 -1.15 16 19 C -0.02 -0.22 2.68 -91.43 -0.24 -0.46 16 20 H 0.09 1.04 6.73 -51.93 -0.35 0.69 16 21 C 0.22 2.86 6.42 -155.41 -1.00 1.86 16 22 N -0.48 -6.90 11.25 -10.82 -0.12 -7.02 16 23 C -0.03 -0.35 11.87 -17.81 -0.21 -0.56 16 24 C -0.06 -0.65 11.58 -16.56 -0.19 -0.85 16 25 N -0.46 -5.36 3.15 -121.28 -0.38 -5.74 16 26 C 0.06 0.59 10.83 59.85 0.65 1.23 16 27 C 0.14 1.99 5.68 -3.49 -0.02 1.97 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 30 H 0.07 1.07 7.02 -51.92 -0.36 0.71 16 31 H 0.03 0.65 7.17 -51.93 -0.37 0.28 16 32 H 0.02 0.53 7.04 -51.93 -0.37 0.17 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.09 1.02 7.13 -51.93 -0.37 0.65 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.17 1.57 8.06 -52.48 -0.42 1.15 16 41 H 0.17 1.27 8.06 -52.49 -0.42 0.84 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 0.92 7.05 -51.93 -0.37 0.56 16 45 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 46 H 0.09 1.51 7.12 -51.93 -0.37 1.14 16 LS Contribution 380.44 15.07 5.73 5.73 Total: -1.00 -36.09 380.44 -10.26 -46.35 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.22 Total: 1.65 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -1.16 Total: -3.85 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -0.51 Total: -74.18 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -1.79 Total: -44.78 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.67 Total: 15.41 kcal Atomic # 16 Polarization: 54.31 SS G_CDS: -0.65 Total: 53.66 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.09 -10.26 -46.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443960621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.047 kcal (2) G-P(sol) polarization free energy of solvation -36.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds