Wall clock time and date at job start Wed Apr 1 2020 01:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46502 * 119.99873 * 2 1 4 4 C 1.50705 * 109.47103 * 270.00389 * 3 2 1 5 5 H 1.08008 * 120.00079 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99939 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99866 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00229 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47060 * 90.00128 * 8 6 4 10 10 H 1.48493 * 109.47089 * 210.00222 * 8 6 4 11 11 H 1.48503 * 109.46844 * 329.99985 * 8 6 4 12 12 C 1.34775 * 120.00097 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99903 * 179.97438 * 12 2 1 14 14 C 1.50700 * 120.00090 * 359.97438 * 12 2 1 15 15 C 1.52996 * 109.47420 * 180.02562 * 14 12 2 16 16 N 1.46900 * 109.47450 * 180.02562 * 15 14 12 17 17 C 1.46901 * 110.99890 * 180.02562 * 16 15 14 18 18 H 1.09002 * 109.47401 * 34.99821 * 17 16 15 19 19 C 1.53002 * 109.46860 * 274.99873 * 17 16 15 20 20 O 1.42903 * 109.47251 * 295.00126 * 19 17 16 21 21 C 1.50701 * 109.46921 * 154.99793 * 17 16 15 22 22 C 1.38232 * 119.98775 * 24.72395 * 21 17 16 23 23 C 1.38184 * 120.04916 * 179.76456 * 22 21 17 24 24 C 1.38495 * 120.02781 * 0.51022 * 23 22 21 25 25 F 1.35091 * 120.01454 * 179.76828 * 24 23 22 26 26 C 1.38393 * 119.96989 * 359.74491 * 24 23 22 27 27 C 1.38444 * 119.95347 * 359.97438 * 26 24 23 28 28 F 1.35103 * 120.01359 * 180.02562 * 27 26 24 29 29 H 1.09000 * 109.46921 * 269.99933 * 1 2 3 30 30 H 1.08997 * 109.47206 * 30.00075 * 1 2 3 31 31 H 1.08997 * 109.46747 * 150.00110 * 1 2 3 32 32 H 1.08997 * 109.47095 * 29.99819 * 3 2 1 33 33 H 1.08999 * 109.47281 * 150.00380 * 3 2 1 34 34 H 0.97000 * 120.00174 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.46747 * 59.99953 * 14 12 2 36 36 H 1.08994 * 109.47150 * 300.00774 * 14 12 2 37 37 H 1.09002 * 109.46846 * 59.99868 * 15 14 12 38 38 H 1.09005 * 109.47132 * 300.00613 * 15 14 12 39 39 H 1.00901 * 110.99385 * 303.95419 * 16 15 14 40 40 H 1.08996 * 109.47073 * 55.00213 * 19 17 16 41 41 H 1.09002 * 109.46816 * 175.00464 * 19 17 16 42 42 H 0.96690 * 113.99994 * 180.02562 * 20 19 17 43 43 H 1.08004 * 119.97136 * 0.02562 * 22 21 17 44 44 H 1.08003 * 119.98265 * 180.25424 * 23 22 21 45 45 H 1.07999 * 120.02449 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4209 5 1 2.0980 1.0958 -2.2418 6 6 3.1268 2.8775 -1.6728 7 7 3.3464 3.2570 -2.9127 8 14 3.7338 3.9288 -0.2530 9 1 5.1070 3.5070 0.1235 10 1 3.7497 5.3554 -0.6648 11 1 2.8273 3.7597 0.9110 12 6 2.1390 -1.1672 -0.0005 13 8 3.3518 -1.1671 -0.0010 14 6 1.3855 -2.4723 -0.0005 15 6 2.3797 -3.6352 -0.0005 16 7 1.6452 -4.9074 -0.0011 17 6 2.5698 -6.0490 -0.0005 18 1 3.4523 -5.8016 0.5895 19 6 2.9895 -6.3661 -1.4373 20 8 1.8500 -6.8027 -2.1811 21 6 1.8848 -7.2498 0.5994 22 6 0.5059 -7.3435 0.5731 23 6 -0.1233 -8.4463 1.1185 24 6 0.6266 -9.4541 1.7016 25 9 0.0109 -10.5299 2.2389 26 6 2.0069 -9.3589 1.7332 27 6 2.6365 -8.2563 1.1813 28 9 3.9839 -8.1623 1.2110 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5138 33 1 3.1500 1.1385 0.5138 34 1 3.8238 4.0825 -3.0900 35 1 0.7585 -2.5298 -0.8903 36 1 0.7591 -2.5302 0.8896 37 1 3.0064 -3.5774 0.8895 38 1 3.0065 -3.5774 -0.8905 39 1 1.0086 -4.9577 0.7800 40 1 3.4044 -5.4710 -1.9005 41 1 3.7425 -7.1541 -1.4303 42 1 2.0425 -7.0220 -3.1029 43 1 -0.0799 -6.5561 0.1221 44 1 -1.2005 -8.5203 1.0936 45 1 2.5925 -10.1445 2.1873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595867775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:01 Heat of formation + Delta-G solvation = -138.741362 kcal Electronic energy + Delta-G solvation = -29297.520599 eV Core-core repulsion = 24758.476880 eV Total energy + Delta-G solvation = -4539.043719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.154 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.38374 -49.36056 -39.83695 -39.11531 -37.43771 -35.74874 -34.90620 -32.76594 -32.34625 -31.20848 -29.90559 -28.44696 -27.56848 -25.89178 -24.12278 -23.74092 -22.84198 -21.51582 -20.86306 -18.63510 -18.40490 -17.87538 -17.28568 -16.99869 -16.88599 -16.46061 -16.34682 -16.01386 -15.70270 -15.55327 -15.34576 -14.96489 -14.79304 -14.57996 -14.33651 -14.10456 -13.75660 -13.53754 -13.32348 -13.01892 -12.79539 -12.45164 -12.35045 -12.28968 -12.09108 -11.96552 -11.85515 -11.61572 -11.36510 -11.27122 -11.09461 -10.88099 -10.52524 -10.15610 -10.11276 -9.55426 -9.43864 -9.05162 -8.99044 -8.64813 -8.59907 -7.71707 -6.09570 -4.08323 0.54184 0.64775 2.97306 3.28123 3.32979 3.34243 3.35773 3.45869 3.56264 3.94778 4.00363 4.14665 4.24117 4.28605 4.38623 4.48831 4.81697 4.90824 5.05468 5.09703 5.18380 5.21850 5.25729 5.34008 5.38781 5.42258 5.51593 5.55061 5.57030 5.69738 5.72607 5.82734 5.84112 6.02789 6.06397 6.17703 6.37060 6.68501 6.76512 6.92649 7.11940 7.32053 7.52480 7.60077 8.23349 8.46088 8.91515 8.97288 9.50660 11.03803 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.021579 B = 0.002021 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.223762 B =13849.454310 C =14113.741555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.598 5.598 3 C 0.215 3.785 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.897 5.897 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.507 3.493 13 O -0.545 6.545 14 C -0.135 4.135 15 C 0.073 3.927 16 N -0.674 5.674 17 C 0.131 3.869 18 H 0.073 0.927 19 C 0.092 3.908 20 O -0.555 6.555 21 C -0.121 4.121 22 C -0.032 4.032 23 C -0.164 4.164 24 C 0.125 3.875 25 F -0.134 7.134 26 C -0.195 4.195 27 C 0.131 3.869 28 F -0.130 7.130 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.040 0.960 38 H 0.083 0.917 39 H 0.341 0.659 40 H 0.057 0.943 41 H 0.045 0.955 42 H 0.375 0.625 43 H 0.156 0.844 44 H 0.143 0.857 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.777 -25.538 8.529 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.330 5.330 3 C 0.094 3.906 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.294 3.706 13 O -0.423 6.423 14 C -0.175 4.175 15 C -0.056 4.056 16 N -0.306 5.306 17 C 0.021 3.979 18 H 0.091 0.909 19 C 0.013 3.987 20 O -0.359 6.359 21 C -0.122 4.122 22 C -0.050 4.050 23 C -0.183 4.183 24 C 0.106 3.894 25 F -0.112 7.112 26 C -0.214 4.214 27 C 0.111 3.889 28 F -0.108 7.108 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.160 0.840 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.221 0.779 43 H 0.174 0.826 44 H 0.161 0.839 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.403 -25.291 8.343 27.641 hybrid contribution 1.082 0.391 1.025 1.541 sum -6.320 -24.900 9.367 27.344 Atomic orbital electron populations 1.21673 0.80871 1.03145 1.00403 1.47844 1.06335 1.07152 1.71697 1.19662 0.92440 0.80127 0.98365 1.21329 1.36942 1.07123 0.91266 0.90772 1.24871 0.95274 0.97378 0.95590 1.69897 1.41455 1.23595 1.18640 0.86838 0.80096 0.79750 0.82915 1.19934 1.21062 1.19100 1.20296 0.88035 0.85150 0.77156 1.90668 1.14015 1.87353 1.50224 1.21571 0.99231 0.92498 1.04216 1.21764 0.94990 0.86561 1.02306 1.60576 1.19330 1.00824 1.49899 1.20404 0.94599 0.87942 0.94951 0.90902 1.22092 0.87602 0.98107 0.90873 1.86526 1.34227 1.88764 1.26423 1.19912 0.94588 0.96740 1.00980 1.20854 0.92897 0.97085 0.94213 1.21275 1.01321 0.94152 1.01525 1.17332 0.89922 0.85086 0.97098 1.91527 1.82892 1.53119 1.83687 1.20946 0.93924 1.00178 1.06377 1.17133 0.77154 0.95055 0.99553 1.91531 1.28786 1.96074 1.94444 0.93718 0.90616 0.91898 0.95278 0.94617 0.92565 0.88268 0.89769 0.94164 0.89842 0.84017 0.92503 0.93711 0.77937 0.82644 0.83918 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.24 59.85 0.61 1.84 16 2 N -0.60 -12.09 2.86 -182.95 -0.52 -12.61 16 3 C 0.21 5.24 4.23 -5.19 -0.02 5.22 16 4 C -0.53 -15.16 9.94 -34.44 -0.34 -15.51 16 5 H 0.07 2.34 8.06 -52.48 -0.42 1.91 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 8 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 9 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 12 C 0.51 9.94 7.67 -10.99 -0.08 9.86 16 13 O -0.54 -13.04 15.56 5.56 0.09 -12.95 16 14 C -0.13 -1.80 4.51 -27.89 -0.13 -1.93 16 15 C 0.07 0.93 4.77 -3.83 -0.02 0.91 16 16 N -0.67 -6.80 5.52 -107.95 -0.60 -7.39 16 17 C 0.13 1.29 2.40 -68.86 -0.17 1.12 16 18 H 0.07 0.75 7.45 -51.93 -0.39 0.36 16 19 C 0.09 0.88 6.79 37.16 0.25 1.14 16 20 O -0.56 -5.28 12.88 -35.23 -0.45 -5.73 16 21 C -0.12 -1.10 4.53 -104.55 -0.47 -1.57 16 22 C -0.03 -0.26 8.60 -39.60 -0.34 -0.60 16 23 C -0.16 -1.21 10.02 -39.51 -0.40 -1.61 16 24 C 0.13 1.04 7.30 -39.43 -0.29 0.76 16 25 F -0.13 -1.19 17.27 2.25 0.04 -1.15 16 26 C -0.19 -1.63 10.01 -39.45 -0.39 -2.02 16 27 C 0.13 1.22 7.24 -39.43 -0.29 0.93 16 28 F -0.13 -1.31 16.57 2.25 0.04 -1.27 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 32 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 33 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.10 1.26 7.40 -51.93 -0.38 0.88 16 36 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 37 H 0.04 0.55 8.01 -51.93 -0.42 0.13 16 38 H 0.08 1.23 7.32 -51.93 -0.38 0.85 16 39 H 0.34 2.90 7.25 -39.29 -0.28 2.62 16 40 H 0.06 0.58 7.35 -51.93 -0.38 0.20 16 41 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.37 2.17 9.12 45.56 0.42 2.59 16 43 H 0.16 1.16 6.96 -52.48 -0.37 0.79 16 44 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 45 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 382.79 15.07 5.77 5.77 Total: -1.00 -35.19 382.79 -7.07 -42.26 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.36 Total: 2.55 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -2.17 Total: 0.52 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.34 Total: -46.89 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.37 Total: -18.68 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.08 Total: -2.42 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.19 -7.07 -42.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595867775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.484 kcal (2) G-P(sol) polarization free energy of solvation -35.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds