Wall clock time and date at job start Wed Apr 1 2020 00:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47167 * 2 1 4 4 O 1.45199 * 109.47600 * 120.00089 * 2 1 3 5 5 C 1.34235 * 117.00168 * 89.99234 * 4 2 1 6 6 O 1.20817 * 119.99558 * 0.02562 * 5 4 2 7 7 C 1.50692 * 119.99950 * 180.02562 * 5 4 2 8 8 H 1.09001 * 109.47501 * 313.72628 * 7 5 4 9 9 C 1.53001 * 109.47184 * 73.72995 * 7 5 4 10 10 N 1.46904 * 109.47191 * 193.72540 * 7 5 4 11 11 C 1.46900 * 111.00032 * 164.16104 * 10 7 5 12 12 C 1.46898 * 111.00217 * 288.12202 * 10 7 5 13 13 N 1.46495 * 109.47237 * 169.99666 * 12 10 7 14 14 N 1.40164 * 126.14557 * 270.03999 * 13 12 10 15 15 C 1.32244 * 107.75708 * 179.68779 * 14 13 12 16 16 C 1.40111 * 125.92707 * 180.29101 * 15 14 13 17 17 H 1.08004 * 120.00473 * 180.16632 * 16 15 14 18 18 C 1.40043 * 119.99985 * 0.16866 * 16 15 14 19 19 N 1.30798 * 120.00066 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99889 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47171 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47145 * 119.99804 * 20 18 16 23 23 H 1.48504 * 109.47097 * 239.99794 * 20 18 16 24 24 N 1.38497 * 108.14705 * 0.43473 * 15 14 13 25 25 C 1.46504 * 125.83749 * 179.82477 * 24 15 14 26 26 C 1.34733 * 108.32972 * 359.55933 * 24 15 14 27 27 S 1.71201 * 125.97302 * 180.26535 * 26 24 15 28 28 H 1.09003 * 109.46560 * 300.00191 * 1 2 3 29 29 H 1.08996 * 109.46754 * 59.99720 * 1 2 3 30 30 H 1.09003 * 109.47008 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47029 * 240.00058 * 2 1 3 32 32 H 1.09003 * 109.47051 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47077 * 300.00128 * 3 2 1 34 34 H 1.08995 * 109.46917 * 60.00346 * 3 2 1 35 35 H 1.09000 * 109.47016 * 300.00115 * 9 7 5 36 36 H 1.09001 * 109.47201 * 59.99449 * 9 7 5 37 37 H 1.09004 * 109.47736 * 179.97438 * 9 7 5 38 38 H 1.08998 * 109.47085 * 189.82281 * 11 10 7 39 39 H 1.08995 * 109.47246 * 309.82856 * 11 10 7 40 40 H 1.09001 * 109.46736 * 69.82906 * 11 10 7 41 41 H 1.08998 * 109.47374 * 49.99505 * 12 10 7 42 42 H 1.09001 * 109.46985 * 289.99667 * 12 10 7 43 43 H 0.96992 * 119.99695 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.46741 * 269.71388 * 25 24 15 45 45 H 1.08999 * 109.47586 * 149.71504 * 25 24 15 46 46 H 1.08996 * 109.47001 * 29.71099 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 2.2172 -2.0076 1.0851 6 8 1.9981 -2.5748 0.0411 7 6 2.7183 -2.7853 2.2745 8 1 3.5518 -2.2524 2.7323 9 6 1.5893 -2.9397 3.2955 10 7 3.1677 -4.1137 1.8370 11 6 3.9959 -4.7550 2.8670 12 6 2.0252 -4.9634 1.4756 13 7 2.5101 -6.1825 0.8238 14 7 2.7212 -6.3570 -0.5508 15 6 3.1661 -7.5883 -0.7375 16 6 3.5053 -8.1619 -1.9700 17 1 3.8580 -9.1818 -2.0122 18 6 3.3871 -7.4126 -3.1472 19 7 2.9596 -6.1775 -3.0962 20 14 3.8400 -8.1772 -4.7903 21 1 4.2931 -9.5753 -4.5776 22 1 2.6533 -8.1713 -5.6829 23 1 4.9344 -7.3926 -5.4165 24 7 3.2354 -8.2135 0.4964 25 6 3.6759 -9.5899 0.7370 26 6 2.8341 -7.3377 1.4383 27 16 2.7504 -7.6393 3.1215 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.2558 -1.9541 3.6202 36 1 0.7559 -3.4726 2.8378 37 1 1.9516 -3.5026 4.1557 38 1 4.4568 -5.6529 2.4554 39 1 4.7734 -4.0632 3.1908 40 1 3.3718 -5.0249 3.7189 41 1 1.3712 -4.4216 0.7924 42 1 1.4707 -5.2287 2.3758 43 1 2.8774 -5.6588 -3.9116 44 1 2.8173 -10.2597 0.6892 45 1 4.1349 -9.6574 1.7233 46 1 4.4031 -9.8767 -0.0226 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794635429.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:04 Heat of formation + Delta-G solvation = 6.595528 kcal Electronic energy + Delta-G solvation = -29077.122498 eV Core-core repulsion = 25130.514198 eV Total energy + Delta-G solvation = -3946.608301 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.94057 -40.52606 -38.07098 -36.27401 -34.31935 -33.83631 -33.21444 -31.15647 -30.10481 -28.14394 -27.44670 -26.54388 -25.93908 -25.32329 -23.27405 -21.82722 -20.90467 -20.81607 -19.92622 -17.87854 -17.60884 -16.70293 -16.57788 -15.93727 -15.73551 -15.48746 -15.18738 -14.86021 -14.64021 -14.39763 -13.88208 -13.82489 -13.46438 -13.18547 -13.16348 -12.84976 -12.48137 -12.42109 -12.18289 -12.13407 -12.09241 -11.93628 -11.75060 -11.66412 -11.49754 -11.39504 -11.30814 -11.00374 -10.98717 -10.60890 -10.49198 -10.46775 -10.11125 -9.91258 -9.45115 -9.16307 -8.82966 -8.19843 -6.96579 -6.77340 -6.63722 -5.06865 2.28617 2.43088 2.56316 2.62575 2.82242 2.95040 3.00215 3.36081 3.60147 3.69611 4.04529 4.29329 4.63444 4.69521 4.77775 4.87908 4.91407 4.97563 5.04328 5.25134 5.35306 5.42866 5.52906 5.54116 5.58327 5.61647 5.62518 5.73381 5.85209 5.86810 5.89741 5.95771 6.00357 6.08409 6.12334 6.32702 6.48771 6.56607 6.60859 6.86647 7.02315 7.04228 7.13243 7.62376 7.81944 7.99965 8.29423 8.41761 9.21804 10.01381 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.009569 B = 0.004248 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2925.418687 B = 6589.857589 C = 9084.822352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.079 3.921 3 C -0.147 4.147 4 O -0.358 6.358 5 C 0.456 3.544 6 O -0.468 6.468 7 C 0.102 3.898 8 H 0.120 0.880 9 C -0.185 4.185 10 N -0.537 5.537 11 C 0.030 3.970 12 C 0.322 3.678 13 N -0.365 5.365 14 N -0.319 5.319 15 C 0.368 3.632 16 C -0.440 4.440 17 H 0.097 0.903 18 C 0.075 3.925 19 N -0.730 5.730 20 Si 0.927 3.073 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.271 1.271 24 N -0.513 5.513 25 C 0.100 3.900 26 C 0.461 3.539 27 S -0.719 6.719 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.114 0.886 42 H 0.076 0.924 43 H 0.285 0.715 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.393 10.527 3.358 11.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.024 3.976 3 C -0.205 4.205 4 O -0.276 6.276 5 C 0.296 3.704 6 O -0.351 6.351 7 C -0.009 4.009 8 H 0.137 0.863 9 C -0.243 4.243 10 N -0.264 5.264 11 C -0.117 4.117 12 C 0.110 3.890 13 N -0.150 5.150 14 N -0.150 5.150 15 C 0.118 3.882 16 C -0.481 4.481 17 H 0.115 0.885 18 C -0.152 4.152 19 N -0.354 5.354 20 Si 0.750 3.250 21 H -0.182 1.182 22 H -0.196 1.196 23 H -0.196 1.196 24 N -0.214 5.214 25 C -0.043 4.043 26 C 0.091 3.909 27 S -0.596 6.596 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.132 0.868 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.108 0.892 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.590 11.432 2.994 11.924 hybrid contribution 0.003 -0.939 -0.822 1.248 sum -1.587 10.493 2.171 10.832 Atomic orbital electron populations 1.22196 0.94479 1.03171 1.02751 1.22691 0.94454 0.92902 0.87533 1.21870 1.02104 0.93618 1.02869 1.86525 1.77560 1.22443 1.41069 1.23634 0.75291 0.81162 0.90284 1.90778 1.45279 1.69270 1.29784 1.21136 0.99281 0.90205 0.90237 0.86275 1.22442 0.98512 1.03829 0.99558 1.61692 1.21513 1.01305 1.41852 1.22670 0.96584 0.99114 0.93303 1.21966 0.89864 0.80647 0.96487 1.49130 1.50269 1.08511 1.07061 1.79577 1.35784 1.14132 0.85530 1.21429 0.93933 0.87391 0.85410 1.18359 1.42299 1.00479 0.86999 0.88509 1.25845 0.93631 0.94528 1.01216 1.69912 1.27614 1.07165 1.30699 0.85943 0.79036 0.80103 0.79906 1.18218 1.19555 1.19553 1.45987 1.55786 1.13279 1.06356 1.21752 1.00498 0.78436 1.03590 1.22922 0.89707 0.84951 0.93334 1.92651 1.83243 1.91296 0.92363 0.91729 0.90862 0.91853 0.89528 0.91717 0.90551 0.91561 0.90587 0.91562 0.89998 0.90552 0.92328 0.92716 0.86778 0.90660 0.90396 0.91534 0.89243 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 9.55 37.16 0.35 -1.38 16 2 C 0.08 0.93 3.18 -26.73 -0.09 0.84 16 3 C -0.15 -1.27 9.57 37.16 0.36 -0.91 16 4 O -0.36 -4.79 9.88 -39.27 -0.39 -5.18 16 5 C 0.46 7.23 7.03 36.00 0.25 7.49 16 6 O -0.47 -9.37 13.56 -18.74 -0.25 -9.63 16 7 C 0.10 1.45 2.81 -68.87 -0.19 1.26 16 8 H 0.12 1.42 7.81 -51.93 -0.41 1.01 16 9 C -0.18 -2.17 8.33 37.16 0.31 -1.86 16 10 N -0.54 -9.86 4.59 -240.20 -1.10 -10.96 16 11 C 0.03 0.54 7.90 60.06 0.47 1.01 16 12 C 0.32 6.61 4.49 -63.32 -0.28 6.33 16 13 N -0.36 -8.84 3.58 -65.05 -0.23 -9.07 16 14 N -0.32 -8.64 10.77 31.21 0.34 -8.30 16 15 C 0.37 9.40 7.50 -155.27 -1.16 8.24 16 16 C -0.44 -10.62 8.98 -38.20 -0.34 -10.96 16 17 H 0.10 2.09 7.11 -52.48 -0.37 1.72 16 18 C 0.07 1.76 5.50 -17.32 -0.10 1.66 16 19 N -0.73 -18.69 11.90 55.55 0.66 -18.02 16 20 Si 0.93 17.26 29.56 -169.99 -5.02 12.23 16 21 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 22 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 23 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 24 N -0.51 -11.91 3.17 -124.66 -0.39 -12.31 16 25 C 0.10 1.82 10.65 59.85 0.64 2.46 16 26 C 0.46 11.06 6.66 -86.93 -0.58 10.48 16 27 S -0.72 -17.05 26.99 -107.50 -2.90 -19.95 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.20 7.16 -51.93 -0.37 0.83 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.84 6.53 -51.93 -0.34 0.51 16 37 H 0.08 0.93 7.15 -51.93 -0.37 0.56 16 38 H 0.08 1.62 6.28 -51.93 -0.33 1.30 16 39 H 0.06 0.86 7.87 -51.93 -0.41 0.45 16 40 H 0.05 0.95 6.50 -51.93 -0.34 0.62 16 41 H 0.11 2.47 5.90 -51.93 -0.31 2.16 16 42 H 0.08 1.48 6.29 -51.93 -0.33 1.15 16 43 H 0.28 6.64 8.29 -40.82 -0.34 6.30 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.09 1.59 7.61 -51.93 -0.40 1.20 16 46 H 0.08 1.36 7.31 -51.93 -0.38 0.98 16 LS Contribution 384.43 15.07 5.79 5.79 Total: -1.00 -32.64 384.43 -10.73 -43.37 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.86 Total: 7.37 kcal Atomic # 6 Polarization: 25.01 SS G_CDS: -0.36 Total: 24.65 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.73 Total: -58.67 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.64 Total: -14.80 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.02 Total: 12.23 kcal Atomic # 16 Polarization: -17.05 SS G_CDS: -2.90 Total: -19.95 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.64 -10.73 -43.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794635429.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.965 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds