Wall clock time and date at job start Wed Apr 1 2020 00:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47090 * 2 1 4 4 C 1.34771 * 120.00080 * 83.60427 * 3 2 1 5 5 O 1.21611 * 120.00412 * 184.66791 * 4 3 2 6 6 C 1.47461 * 119.99825 * 4.67154 * 4 3 2 7 7 C 1.36236 * 126.36457 * 174.05713 * 6 4 3 8 8 O 1.34276 * 107.12208 * 179.87194 * 7 6 4 9 9 C 1.34483 * 108.16883 * 0.38925 * 8 7 6 10 10 C 1.47870 * 125.48678 * 179.77636 * 9 8 7 11 11 C 1.39977 * 120.56218 * 359.69780 * 10 9 8 12 12 C 1.38366 * 118.29548 * 179.71530 * 11 10 9 13 13 C 1.38343 * 119.30057 * 0.58068 * 12 11 10 14 14 N 1.31908 * 121.07527 * 359.67417 * 13 12 11 15 15 C 1.31704 * 121.87770 * 0.02813 * 14 13 12 16 16 N 1.30887 * 109.01876 * 359.75267 * 9 8 7 17 17 C 1.46508 * 120.00122 * 263.60186 * 3 2 1 18 18 C 1.53946 * 113.74237 * 222.87138 * 17 3 2 19 19 N 1.47803 * 86.03487 * 222.08285 * 18 17 3 20 20 C 1.36940 * 134.45583 * 204.64389 * 19 18 17 21 21 H 1.08007 * 119.99929 * 179.86773 * 20 19 18 22 22 C 1.38809 * 119.99962 * 359.86449 * 20 19 18 23 23 N 1.31615 * 120.00231 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00099 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46935 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46952 * 119.99900 * 24 22 20 27 27 H 1.48499 * 109.47264 * 240.00407 * 24 22 20 28 28 C 1.47580 * 91.05653 * 24.54981 * 19 18 17 29 29 H 1.08999 * 109.47251 * 59.99752 * 1 2 3 30 30 H 1.09001 * 109.47030 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46824 * 299.99905 * 1 2 3 32 32 H 1.08999 * 109.47251 * 120.00248 * 2 1 3 33 33 H 1.09002 * 109.46824 * 240.00095 * 2 1 3 34 34 H 1.08001 * 126.43873 * 0.02562 * 7 6 4 35 35 H 1.08007 * 120.85303 * 359.97181 * 11 10 9 36 36 H 1.08005 * 120.34906 * 180.28304 * 12 11 10 37 37 H 1.08001 * 119.46248 * 179.70418 * 13 12 11 38 38 H 1.07999 * 119.72107 * 180.02562 * 15 14 13 39 39 H 1.09004 * 112.94350 * 354.45901 * 17 3 2 40 40 H 1.09000 * 113.76741 * 336.35366 * 18 17 3 41 41 H 1.08997 * 113.76855 * 107.74686 * 18 17 3 42 42 H 0.96996 * 120.00252 * 179.97438 * 23 22 20 43 43 H 1.08995 * 113.77467 * 221.15506 * 28 19 18 44 44 H 1.08997 * 113.76975 * 89.74848 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1204 2.0599 1.1599 5 8 2.4442 3.2320 1.1521 6 6 1.8394 1.3811 2.4384 7 6 2.0101 1.9035 3.6850 8 8 1.6349 0.9602 4.5638 9 6 1.2483 -0.1267 3.8727 10 6 0.7654 -1.3931 4.4642 11 6 0.6839 -1.5443 5.8534 12 6 0.2198 -2.7470 6.3561 13 6 -0.1338 -3.7563 5.4785 14 7 -0.0414 -3.5873 4.1736 15 6 0.3888 -2.4593 3.6471 16 7 1.3678 0.1171 2.5924 17 6 2.3958 2.0247 -1.2609 18 6 3.6977 2.8418 -1.1743 19 7 2.9924 3.8586 -1.9826 20 6 3.3929 4.8554 -2.8319 21 1 2.6570 5.4805 -3.3159 22 6 4.7445 5.0625 -3.0705 23 7 5.6412 4.3004 -2.4810 24 14 5.2909 6.4218 -4.2296 25 1 4.0978 7.1294 -4.7598 26 1 6.1501 7.3839 -3.4939 27 1 6.0589 5.8330 -5.3559 28 6 1.6839 3.3669 -1.5092 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 2.3759 2.8917 3.9218 35 1 0.9718 -0.7413 6.5158 36 1 0.1391 -2.8979 7.4225 37 1 -0.4917 -4.6978 5.8682 38 1 0.4501 -2.3586 2.5735 39 1 2.3602 1.3450 -2.1122 40 1 3.9414 3.1743 -0.1652 41 1 4.5414 2.3795 -1.6866 42 1 6.5857 4.4449 -2.6481 43 1 0.9229 3.3230 -2.2882 44 1 1.3348 3.8540 -0.5987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950766521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:26 Heat of formation + Delta-G solvation = 112.718135 kcal Electronic energy + Delta-G solvation = -29405.005525 eV Core-core repulsion = 25327.555094 eV Total energy + Delta-G solvation = -4077.450430 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.63228 -40.48801 -39.91129 -36.89885 -35.68115 -34.63131 -33.59512 -32.36858 -31.96254 -29.95789 -29.58062 -27.38041 -25.05166 -24.76873 -24.62140 -24.00705 -23.10116 -22.43113 -21.75431 -20.10011 -19.10592 -17.85486 -17.24451 -17.07952 -16.75779 -16.60669 -16.18461 -16.16297 -15.55583 -14.94785 -14.56306 -14.46324 -14.36378 -13.99812 -13.84797 -13.63027 -13.57584 -13.47306 -12.80400 -12.51931 -12.37580 -12.16556 -11.82484 -11.60444 -11.33768 -11.25708 -11.13396 -10.81390 -10.70200 -10.63009 -10.32504 -10.08174 -10.06200 -9.96394 -9.89289 -9.48412 -9.39019 -8.78213 -8.60477 -8.01758 -6.70919 -5.65461 -2.96045 0.05453 0.70568 1.16631 2.03203 2.18091 3.13630 3.31279 3.45012 3.47051 3.50074 3.52329 3.53539 3.99541 4.29392 4.31516 4.45830 4.53453 4.58922 4.72206 4.86405 5.16310 5.24576 5.28327 5.34597 5.41199 5.47856 5.49816 5.54972 5.61729 5.67000 5.68692 5.79913 5.94358 5.99378 6.07747 6.17353 6.42810 6.48070 6.66575 6.72711 7.00677 7.19759 7.38227 7.41430 7.65029 7.68292 7.82394 8.08861 8.50177 9.15985 9.81996 10.73453 11.52089 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.027914 B = 0.002366 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.831096 B =11830.652376 C =12347.201890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.096 3.904 3 N -0.583 5.583 4 C 0.590 3.410 5 O -0.509 6.509 6 C -0.052 4.052 7 C 0.016 3.984 8 O -0.192 6.192 9 C 0.225 3.775 10 C -0.066 4.066 11 C -0.047 4.047 12 C -0.173 4.173 13 C 0.113 3.887 14 N -0.480 5.480 15 C 0.152 3.848 16 N -0.432 5.432 17 C 0.089 3.911 18 C 0.156 3.844 19 N -0.604 5.604 20 C -0.214 4.214 21 H 0.080 0.920 22 C -0.011 4.011 23 N -0.921 5.921 24 Si 0.911 3.089 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.112 3.888 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.235 0.765 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.162 0.838 38 H 0.173 0.827 39 H 0.106 0.894 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.251 0.749 43 H 0.037 0.963 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.234 -17.518 19.454 28.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.028 4.028 3 N -0.315 5.315 4 C 0.375 3.625 5 O -0.384 6.384 6 C -0.173 4.173 7 C -0.057 4.057 8 O -0.078 6.078 9 C 0.019 3.981 10 C -0.069 4.069 11 C -0.074 4.074 12 C -0.192 4.192 13 C -0.044 4.044 14 N -0.188 5.188 15 C -0.007 4.007 16 N -0.163 5.163 17 C -0.014 4.014 18 C 0.030 3.970 19 N -0.331 5.331 20 C -0.342 4.342 21 H 0.097 0.903 22 C -0.207 4.207 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.015 4.015 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.122 0.878 33 H 0.089 0.911 34 H 0.251 0.749 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.179 0.821 38 H 0.190 0.810 39 H 0.124 0.876 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.212 -17.787 18.212 28.234 hybrid contribution 0.774 2.056 0.596 2.276 sum -11.438 -15.731 18.808 27.056 Atomic orbital electron populations 1.22044 0.96183 1.01438 1.01676 1.21944 0.94501 0.82516 1.03801 1.47927 1.63051 1.14015 1.06474 1.16756 0.78539 0.85613 0.81577 1.90921 1.46773 1.14600 1.86112 1.22104 1.07586 0.91569 0.96070 1.25441 0.99144 0.94400 0.86731 1.84396 1.62710 1.21807 1.38876 1.23582 1.00835 0.88254 0.85410 1.18336 1.04731 0.89808 0.94019 1.21726 0.93984 0.98053 0.93638 1.22115 1.01224 0.93878 1.02022 1.23049 0.93658 0.98955 0.88704 1.67867 1.13529 1.23012 1.14371 1.23013 0.90530 0.86150 1.01015 1.71194 1.16055 1.14360 1.14685 1.24158 1.00293 0.93467 0.83516 1.22717 0.92232 0.86388 0.95637 1.45691 1.00720 1.37545 1.49104 1.19040 0.91245 1.07424 1.16488 0.90259 1.24778 0.95560 0.99730 1.00636 1.69840 1.00133 1.40620 1.46234 0.86048 0.78351 0.81332 0.80071 1.20512 1.21844 1.21805 1.22926 0.90586 0.91130 0.96825 0.93009 0.92144 0.92801 0.87837 0.91053 0.74862 0.83846 0.83852 0.82054 0.81019 0.87608 0.92909 0.91439 0.93844 0.94498 0.93285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.74 37.16 0.36 -1.46 16 2 C 0.10 1.25 5.74 -4.04 -0.02 1.23 16 3 N -0.58 -9.93 2.75 -169.16 -0.46 -10.40 16 4 C 0.59 10.53 7.04 -12.51 -0.09 10.44 16 5 O -0.51 -11.01 12.61 5.27 0.07 -10.94 16 6 C -0.05 -0.73 6.50 -83.08 -0.54 -1.27 16 7 C 0.02 0.19 11.94 30.01 0.36 0.55 16 8 O -0.19 -2.03 10.53 5.29 0.06 -1.97 16 9 C 0.22 2.40 7.89 -14.01 -0.11 2.29 16 10 C -0.07 -0.57 5.89 -104.83 -0.62 -1.19 16 11 C -0.05 -0.30 9.85 -38.88 -0.38 -0.69 16 12 C -0.17 -0.84 10.10 -39.50 -0.40 -1.24 16 13 C 0.11 0.67 11.17 -17.48 -0.20 0.47 16 14 N -0.48 -4.12 10.35 -12.92 -0.13 -4.26 16 15 C 0.15 1.32 10.85 -17.13 -0.19 1.13 16 16 N -0.43 -5.30 6.31 -8.26 -0.05 -5.36 16 17 C 0.09 1.80 4.60 -70.15 -0.32 1.47 16 18 C 0.16 3.99 6.79 -2.84 -0.02 3.97 16 19 N -0.60 -16.70 3.70 -177.92 -0.66 -17.35 16 20 C -0.21 -6.35 10.70 -15.06 -0.16 -6.51 16 21 H 0.08 2.27 7.83 -52.48 -0.41 1.86 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 23 N -0.92 -28.58 11.39 55.49 0.63 -27.95 16 24 Si 0.91 23.05 29.55 -169.99 -5.02 18.03 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 28 C 0.11 2.56 8.27 -2.97 -0.02 2.53 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.69 7.15 -51.93 -0.37 0.32 16 32 H 0.10 1.32 5.23 -51.93 -0.27 1.04 16 33 H 0.07 0.86 7.86 -51.93 -0.41 0.45 16 34 H 0.24 2.16 8.06 -52.49 -0.42 1.73 16 35 H 0.14 0.71 7.97 -52.48 -0.42 0.29 16 36 H 0.14 0.29 8.06 -52.48 -0.42 -0.14 16 37 H 0.16 0.48 8.06 -52.49 -0.42 0.06 16 38 H 0.17 1.40 7.83 -52.49 -0.41 0.99 16 39 H 0.11 1.98 7.90 -51.93 -0.41 1.57 16 40 H 0.05 1.46 5.70 -51.93 -0.30 1.16 16 41 H 0.07 1.87 7.16 -51.93 -0.37 1.50 16 42 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.05 1.18 6.31 -51.93 -0.33 0.85 16 LS Contribution 368.94 15.07 5.56 5.56 Total: -1.00 -36.26 368.94 -7.83 -44.10 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.37 Total: -0.78 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: -2.45 Total: 11.32 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -0.68 Total: -65.31 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.12 Total: -12.91 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.26 -7.83 -44.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950766521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.814 kcal (2) G-P(sol) polarization free energy of solvation -36.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds