Wall clock time and date at job start Wed Apr 1 2020 01:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36745 * 127.13148 * 2 1 4 4 C 1.50697 * 126.34686 * 359.76083 * 3 2 1 5 5 C 1.52997 * 109.47334 * 90.00277 * 4 3 2 6 6 C 1.52998 * 109.47085 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46998 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00090 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99930 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00012 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99906 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47117 * 89.99967 * 11 9 7 13 13 H 1.48497 * 109.47190 * 209.99613 * 11 9 7 14 14 H 1.48503 * 109.47524 * 329.99686 * 11 9 7 15 15 N 1.30298 * 107.29919 * 180.02562 * 3 2 1 16 16 N 1.28518 * 110.05736 * 0.02562 * 15 3 2 17 17 C 1.31221 * 109.86078 * 0.02562 * 16 15 3 18 18 N 1.38582 * 126.46901 * 179.97438 * 17 16 15 19 19 C 1.48539 * 110.99620 * 242.63624 * 18 17 16 20 20 C 1.54938 * 103.22503 * 159.72343 * 19 18 17 21 21 C 1.54598 * 102.92107 * 322.58746 * 20 19 18 22 22 H 1.08999 * 110.30808 * 263.04092 * 21 20 19 23 23 S 1.81399 * 110.38925 * 140.91645 * 21 20 19 24 24 C 1.81403 * 101.92184 * 64.23647 * 23 21 20 25 25 O 1.42101 * 108.57696 * 178.72112 * 23 21 20 26 26 O 1.42095 * 108.58077 * 309.74705 * 23 21 20 27 27 C 1.47893 * 111.00368 * 0.03566 * 18 17 16 28 28 H 1.09002 * 109.46806 * 89.97764 * 1 2 3 29 29 H 1.08998 * 109.46777 * 209.97115 * 1 2 3 30 30 H 1.08998 * 109.47327 * 329.97501 * 1 2 3 31 31 H 1.09004 * 109.46476 * 209.99311 * 4 3 2 32 32 H 1.08992 * 109.47326 * 329.99141 * 4 3 2 33 33 H 1.09007 * 109.46879 * 299.99680 * 5 4 3 34 34 H 1.08999 * 109.47553 * 59.98971 * 5 4 3 35 35 H 1.09002 * 109.47166 * 299.99169 * 6 5 4 36 36 H 1.08999 * 109.47370 * 59.99859 * 6 5 4 37 37 H 0.97000 * 120.00064 * 180.02562 * 10 9 7 38 38 H 1.08994 * 110.66876 * 278.16205 * 19 18 17 39 39 H 1.09001 * 110.66495 * 41.29059 * 19 18 17 40 40 H 1.09007 * 110.71940 * 204.23171 * 20 19 18 41 41 H 1.08993 * 110.87478 * 81.01930 * 20 19 18 42 42 H 1.09001 * 109.47565 * 59.99630 * 24 23 21 43 43 H 1.08998 * 109.47558 * 179.97438 * 24 23 21 44 44 H 1.09004 * 109.47194 * 299.99813 * 24 23 21 45 45 H 1.09003 * 109.92125 * 333.51245 * 27 18 17 46 46 H 1.08997 * 109.92183 * 94.61090 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0902 0.0000 4 6 1.8619 2.5349 -0.0051 5 6 1.7122 3.0276 1.4357 6 6 1.2777 4.4946 1.4304 7 6 1.1296 4.9796 2.8495 8 1 1.3253 4.3085 3.6728 9 6 0.7431 6.2798 3.0969 10 7 0.5043 7.0968 2.0944 11 14 0.5588 6.8808 4.8559 12 1 1.8523 7.4382 5.3267 13 1 -0.4844 7.9362 4.9117 14 1 0.1621 5.7461 5.7278 15 7 3.5162 0.6481 -0.0006 16 7 3.5212 -0.6370 -0.0014 17 6 2.2888 -1.0877 -0.0021 18 7 1.8979 -2.4172 -0.0036 19 6 1.1364 -2.7467 -1.2356 20 6 1.2510 -4.2894 -1.3212 21 6 2.6928 -4.5567 -0.8317 22 1 3.3668 -4.6657 -1.6814 23 16 2.7427 -6.0444 0.2051 24 6 2.2677 -7.3388 -0.9738 25 8 4.0864 -6.2704 0.6083 26 8 1.7293 -5.9402 1.1956 27 6 3.0730 -3.3152 -0.0036 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3634 0.8897 0.5142 31 1 2.6137 3.1350 -0.5178 32 1 0.9072 2.6289 -0.5224 33 1 0.9605 2.4274 1.9485 34 1 2.6669 2.9335 1.9530 35 1 2.0297 5.0944 0.9178 36 1 0.3230 4.5890 0.9131 37 1 0.2328 8.0117 2.2684 38 1 0.0943 -2.4432 -1.1364 39 1 1.5934 -2.2780 -2.1072 40 1 1.1234 -4.6292 -2.3491 41 1 0.5255 -4.7698 -0.6649 42 1 2.9854 -7.3646 -1.7938 43 1 2.2587 -8.3047 -0.4689 44 1 1.2740 -7.1249 -1.3674 45 1 3.9254 -2.8115 -0.4596 46 1 3.3174 -3.6071 1.0177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121305607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:31 Heat of formation + Delta-G solvation = -10.587155 kcal Electronic energy + Delta-G solvation = -27646.036343 eV Core-core repulsion = 23698.682945 eV Total energy + Delta-G solvation = -3947.353398 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.12277 -40.22611 -38.04158 -37.06264 -36.81563 -35.93982 -34.63430 -33.51810 -30.98931 -30.53623 -30.12323 -28.48396 -28.38950 -25.60060 -24.40686 -22.95082 -22.33737 -21.86060 -21.40145 -19.76846 -18.74052 -18.44135 -18.33091 -17.47241 -17.28088 -17.00910 -16.72738 -16.54311 -16.05850 -15.74180 -15.20010 -15.11071 -14.65753 -14.42820 -14.26120 -13.95145 -13.91632 -13.85985 -13.75672 -13.73576 -13.30729 -13.25098 -13.12535 -13.05199 -12.98423 -12.71482 -12.66199 -12.55142 -12.41716 -12.23385 -11.91058 -11.77234 -11.54540 -11.41038 -11.27919 -11.25044 -11.18370 -10.78810 -10.54460 -9.45267 -8.20064 -6.29789 -0.98886 0.65391 1.15751 1.39648 1.40810 1.51353 1.68311 1.79321 2.40858 2.53639 2.60212 2.91216 3.13336 3.18466 3.27520 3.38488 3.68613 3.81121 3.94034 3.95130 4.09380 4.15425 4.18358 4.27337 4.29542 4.34719 4.36393 4.48408 4.55261 4.57360 4.66815 4.68755 4.75381 4.86398 4.94807 5.01860 5.03049 5.07324 5.15769 5.33201 5.39056 5.51533 5.73989 5.85355 6.04200 6.25913 6.85679 7.38740 7.64113 8.91140 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.024622 B = 0.001966 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.937866 B =14242.016723 C =14515.738453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.474 5.474 3 C 0.196 3.804 4 C -0.021 4.021 5 C -0.086 4.086 6 C 0.028 3.972 7 C -0.545 4.545 8 H 0.052 0.948 9 C 0.004 3.996 10 N -0.927 5.927 11 Si 0.959 3.041 12 H -0.276 1.276 13 H -0.278 1.278 14 H -0.267 1.267 15 N -0.327 5.327 16 N -0.360 5.360 17 C 0.343 3.657 18 N -0.436 5.436 19 C 0.032 3.968 20 C -0.099 4.099 21 C -0.578 4.578 22 H 0.184 0.816 23 S 2.413 3.587 24 C -0.627 4.627 25 O -0.989 6.989 26 O -0.975 6.975 27 C 0.065 3.935 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.052 0.948 34 H 0.037 0.963 35 H -0.003 1.003 36 H 0.009 0.991 37 H 0.264 0.736 38 H 0.118 0.882 39 H 0.063 0.937 40 H 0.148 0.852 41 H 0.105 0.895 42 H 0.160 0.840 43 H 0.139 0.861 44 H 0.163 0.837 45 H 0.084 0.916 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.302 -32.091 -15.637 35.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.168 5.168 3 C -0.073 4.073 4 C -0.061 4.061 5 C -0.125 4.125 6 C -0.009 4.009 7 C -0.583 4.583 8 H 0.070 0.930 9 C -0.194 4.194 10 N -0.567 5.567 11 Si 0.784 3.216 12 H -0.202 1.202 13 H -0.203 1.203 14 H -0.191 1.191 15 N -0.165 5.165 16 N -0.205 5.205 17 C -0.014 4.014 18 N -0.161 5.161 19 C -0.094 4.094 20 C -0.137 4.137 21 C -0.687 4.687 22 H 0.202 0.798 23 S 2.600 3.400 24 C -0.781 4.781 25 O -0.986 6.986 26 O -0.972 6.972 27 C -0.064 4.064 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.124 0.876 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.027 0.973 37 H 0.073 0.927 38 H 0.136 0.864 39 H 0.082 0.918 40 H 0.166 0.834 41 H 0.124 0.876 42 H 0.178 0.822 43 H 0.157 0.843 44 H 0.182 0.818 45 H 0.103 0.897 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.969 -32.075 -14.287 35.239 hybrid contribution -0.703 1.160 0.044 1.357 sum -3.671 -30.916 -14.243 34.236 Atomic orbital electron populations 1.22542 0.72616 1.06628 1.06061 1.46204 1.10144 1.04497 1.55979 1.25137 0.86351 0.92558 1.03254 1.20134 1.03392 0.83562 0.99008 1.21359 0.99893 0.97271 0.93987 1.18979 0.95424 0.90968 0.95539 1.21648 1.45868 0.96895 0.93858 0.92982 1.25870 0.95047 0.97129 1.01383 1.70060 1.47605 1.06407 1.32665 0.85541 0.78016 0.78161 0.79893 1.20163 1.20344 1.19145 1.73901 1.19252 1.03017 1.20341 1.74370 1.17553 1.03720 1.24850 1.22884 0.86754 0.88669 1.03129 1.61636 1.20482 0.95275 1.38695 1.23666 1.00006 0.97608 0.88138 1.22631 0.90429 0.94392 1.06287 1.31169 1.08293 1.14595 1.14649 0.79810 1.07924 0.74044 0.79322 0.78727 1.30035 1.15253 1.15839 1.16937 1.93560 1.38064 1.85109 1.81908 1.93568 1.60360 1.86335 1.56931 1.22435 0.92431 0.91186 1.00298 0.87109 0.87336 0.88451 0.88807 0.87636 0.92965 0.94407 0.98431 0.97275 0.92701 0.86359 0.91804 0.83385 0.87633 0.82213 0.84279 0.81841 0.89739 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.03 9.79 127.77 1.25 2.28 16 2 N -0.47 -12.75 3.21 -538.18 -1.73 -14.48 16 3 C 0.20 6.58 7.32 137.64 1.01 7.59 16 4 C -0.02 -0.70 5.43 29.85 0.16 -0.54 16 5 C -0.09 -3.55 5.13 30.59 0.16 -3.39 16 6 C 0.03 1.43 4.97 29.85 0.15 1.58 16 7 C -0.54 -31.04 9.11 25.60 0.23 -30.81 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 9 C 0.00 0.23 5.46 84.66 0.46 0.69 16 10 N -0.93 -55.45 13.29 21.45 0.28 -55.16 16 11 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 15 N -0.33 -12.85 12.18 -49.53 -0.60 -13.45 16 16 N -0.36 -13.12 10.70 -58.01 -0.62 -13.74 16 17 C 0.34 9.92 7.04 260.11 1.83 11.75 16 18 N -0.44 -9.28 5.32 -693.51 -3.69 -12.97 16 19 C 0.03 0.34 6.03 86.65 0.52 0.86 16 20 C -0.10 -0.33 6.16 31.80 0.20 -0.13 16 21 C -0.58 -4.68 3.41 31.47 0.11 -4.57 16 22 H 0.18 0.11 8.14 -2.39 -0.02 0.09 16 23 S 2.41 27.28 4.60 -56.49 -0.26 27.03 16 24 C -0.63 0.73 10.41 113.37 1.18 1.91 16 25 O -0.99 -21.03 18.10 -127.37 -2.30 -23.33 16 26 O -0.97 -19.61 17.45 -127.37 -2.22 -21.83 16 27 C 0.06 1.31 6.16 86.45 0.53 1.84 16 28 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.11 1.46 7.94 -2.39 -0.02 1.44 16 30 H 0.10 1.72 7.90 -2.39 -0.02 1.70 16 31 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 32 H 0.11 2.87 7.94 -2.39 -0.02 2.85 16 33 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 36 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 38 H 0.12 0.79 7.26 -2.39 -0.02 0.77 16 39 H 0.06 0.72 7.99 -2.39 -0.02 0.70 16 40 H 0.15 -0.88 8.14 -2.38 -0.02 -0.89 16 41 H 0.11 0.27 7.32 -2.39 -0.02 0.25 16 42 H 0.16 -0.99 8.14 -2.39 -0.02 -1.01 16 43 H 0.14 -0.16 8.14 -2.39 -0.02 -0.18 16 44 H 0.16 -1.14 7.93 -2.39 -0.02 -1.16 16 45 H 0.08 1.97 6.84 -2.39 -0.02 1.95 16 46 H 0.07 1.71 7.62 -2.39 -0.02 1.69 16 Total: -1.00 -93.47 388.32 -0.36 -93.83 By element: Atomic # 1 Polarization: -2.54 SS G_CDS: 0.97 Total: -1.57 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 7.79 Total: -10.94 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -6.36 Total: -109.80 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -4.53 Total: -45.16 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 27.28 SS G_CDS: -0.26 Total: 27.03 kcal Total: -93.47 -0.36 -93.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121305607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.241 kcal (2) G-P(sol) polarization free energy of solvation -93.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds