Wall clock time and date at job start Wed Apr 1 2020 01:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45196 * 109.47336 * 2 1 4 4 C 1.34233 * 116.99932 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00089 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00003 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.47084 * 173.27460 * 6 4 3 8 8 H 1.09004 * 109.47166 * 53.93854 * 7 6 4 9 9 C 1.50705 * 109.46918 * 173.93571 * 7 6 4 10 10 H 1.07999 * 120.00037 * 239.99702 * 9 7 6 11 11 C 1.37876 * 119.99937 * 60.00212 * 9 7 6 12 12 N 1.31511 * 119.99998 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 119.99663 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46998 * 90.00039 * 13 11 9 15 15 H 1.48501 * 109.47004 * 209.99483 * 13 11 9 16 16 H 1.48497 * 109.47293 * 329.99842 * 13 11 9 17 17 O 1.45197 * 109.46892 * 293.93426 * 7 6 4 18 18 C 1.34238 * 116.99570 * 157.55634 * 17 7 6 19 19 O 1.20820 * 120.00206 * 354.25030 * 18 17 7 20 20 C 1.50696 * 119.99530 * 174.25183 * 18 17 7 21 21 H 1.08994 * 109.86234 * 308.13534 * 20 18 17 22 22 O 1.43348 * 109.97739 * 187.08157 * 20 18 17 23 23 C 1.43987 * 109.98596 * 240.47721 * 22 20 18 24 24 C 1.54001 * 104.52982 * 336.37468 * 23 22 20 25 25 H 1.08998 * 109.69888 * 281.27895 * 24 23 22 26 26 C 1.50947 * 112.42195 * 158.92762 * 24 23 22 27 27 O 1.42686 * 111.79236 * 293.84477 * 26 24 23 28 28 C 1.43264 * 112.51867 * 299.91974 * 27 26 24 29 29 C 1.52327 * 108.34885 * 65.48658 * 28 27 26 30 30 C 1.53116 * 110.83180 * 300.03391 * 29 28 27 31 31 H 1.08993 * 112.80301 * 283.07678 * 30 29 28 32 32 H 1.08993 * 109.47673 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47113 * 299.99988 * 1 2 3 34 34 H 1.08999 * 109.47250 * 59.99285 * 1 2 3 35 35 H 1.09005 * 109.46718 * 240.00351 * 2 1 3 36 36 H 1.08999 * 109.47250 * 120.00715 * 2 1 3 37 37 H 1.09002 * 109.47239 * 53.26938 * 6 4 3 38 38 H 1.09005 * 109.47016 * 293.27085 * 6 4 3 39 39 H 0.97000 * 119.99607 * 180.02562 * 12 11 9 40 40 H 1.08996 * 110.42419 * 217.61272 * 23 22 20 41 41 H 1.09000 * 110.52657 * 95.17990 * 23 22 20 42 42 H 1.09004 * 109.01911 * 54.43931 * 26 24 23 43 43 H 1.08997 * 109.02209 * 173.32453 * 26 24 23 44 44 H 1.09001 * 109.70247 * 185.30353 * 28 27 26 45 45 H 1.09006 * 109.70241 * 305.87273 * 28 27 26 46 46 H 1.09000 * 109.35041 * 179.53658 * 29 28 27 47 47 H 1.09003 * 108.92522 * 60.26206 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9372 0.0012 7 6 5.4395 2.8608 0.1706 8 1 5.8574 2.2021 -0.5908 9 6 6.0314 4.2388 0.0225 10 1 6.7537 4.4354 -0.7560 11 6 5.6509 5.2485 0.8808 12 7 4.7710 5.0092 1.8285 13 14 6.3852 6.9563 0.6975 14 1 5.5434 7.7607 -0.2243 15 1 6.4362 7.6183 2.0259 16 1 7.7594 6.8477 0.1454 17 8 5.7537 2.3382 1.4883 18 6 6.9622 1.7763 1.6487 19 8 7.6911 1.6289 0.6965 20 6 7.4097 1.3293 3.0165 21 1 7.2909 2.1448 3.7298 22 8 8.7818 0.9167 2.9724 23 6 8.8927 -0.4656 3.3600 24 6 7.6378 -0.7296 4.2126 25 1 7.7845 -0.3301 5.2160 26 6 7.2957 -2.1976 4.2944 27 8 6.9041 -2.7217 3.0264 28 6 5.7501 -2.0617 2.4925 29 6 6.1196 -0.6138 2.1969 30 6 6.5716 0.1040 3.4716 31 1 5.7389 0.3829 4.1172 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3634 0.5139 -0.8899 35 1 1.8933 -0.5138 -0.8901 36 1 1.8933 -0.5139 0.8899 37 1 3.4915 3.5077 0.8248 38 1 3.6849 3.4285 -0.9429 39 1 4.5030 5.7196 2.4321 40 1 9.7945 -0.6235 3.9515 41 1 8.8976 -1.1099 2.4809 42 1 8.1673 -2.7461 4.6516 43 1 6.4772 -2.3327 5.0014 44 1 5.4357 -2.5569 1.5738 45 1 4.9401 -2.0908 3.2214 46 1 5.2540 -0.0977 1.7815 47 1 6.9303 -0.5975 1.4685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650493021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:17 Heat of formation + Delta-G solvation = -266.117807 kcal Electronic energy + Delta-G solvation = -32875.896457 eV Core-core repulsion = 28410.124046 eV Total energy + Delta-G solvation = -4465.772411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.89004 -39.84567 -38.68902 -37.41354 -36.17439 -35.12304 -33.29395 -32.82409 -31.80609 -31.62811 -30.33661 -28.71747 -26.28382 -25.43440 -23.81279 -23.30544 -23.11293 -21.75266 -20.02666 -19.48182 -19.45292 -17.34232 -17.07594 -16.68180 -16.42324 -16.21352 -16.11058 -15.72643 -15.46126 -15.15179 -15.05639 -14.79531 -14.55303 -14.06367 -13.88820 -13.56203 -13.14870 -12.90404 -12.78804 -12.73270 -12.38227 -12.24106 -12.02087 -11.89765 -11.77234 -11.51435 -11.41117 -11.25492 -11.04868 -10.93416 -10.80678 -10.77985 -10.46774 -10.31021 -10.17102 -10.09068 -9.89243 -9.76403 -9.45481 -9.42828 -8.93269 -8.76914 -8.68322 -6.27153 -4.43558 2.93630 3.16550 3.24679 3.26994 3.31581 3.33901 3.70443 3.90859 4.15403 4.25663 4.34538 4.71791 4.91454 5.00956 5.03668 5.05165 5.08655 5.11380 5.32615 5.34284 5.36532 5.41917 5.46883 5.53952 5.59114 5.63722 5.78321 5.83595 5.84970 5.88689 5.90594 6.00491 6.04957 6.10935 6.29953 6.33755 6.56133 6.60264 6.85466 6.98537 7.12058 7.14393 7.25556 7.66129 7.91322 8.02329 8.46302 8.65242 9.14557 9.33763 10.75022 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.008090 B = 0.005696 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3460.291883 B = 4914.217511 C = 7758.758477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.365 6.365 4 C 0.459 3.541 5 O -0.516 6.516 6 C -0.100 4.100 7 C 0.233 3.767 8 H 0.045 0.955 9 C -0.547 4.547 10 H 0.069 0.931 11 C 0.081 3.919 12 N -0.862 5.862 13 Si 0.897 3.103 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.271 1.271 17 O -0.335 6.335 18 C 0.461 3.539 19 O -0.513 6.513 20 C 0.088 3.912 21 H 0.109 0.891 22 O -0.352 6.352 23 C 0.059 3.941 24 C -0.159 4.159 25 H 0.094 0.906 26 C 0.075 3.925 27 O -0.378 6.378 28 C 0.066 3.934 29 C -0.168 4.168 30 C -0.096 4.096 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.139 0.861 38 H 0.105 0.895 39 H 0.267 0.733 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.053 0.947 44 H 0.096 0.904 45 H 0.050 0.950 46 H 0.103 0.897 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.744 -11.337 5.663 13.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.283 6.283 4 C 0.304 3.696 5 O -0.405 6.405 6 C -0.138 4.138 7 C 0.180 3.820 8 H 0.063 0.937 9 C -0.584 4.584 10 H 0.087 0.913 11 C -0.125 4.125 12 N -0.498 5.498 13 Si 0.723 3.277 14 H -0.201 1.201 15 H -0.208 1.208 16 H -0.195 1.195 17 O -0.251 6.251 18 C 0.303 3.697 19 O -0.403 6.403 20 C 0.029 3.971 21 H 0.127 0.873 22 O -0.271 6.271 23 C -0.018 4.018 24 C -0.178 4.178 25 H 0.112 0.888 26 C -0.002 4.002 27 O -0.296 6.296 28 C -0.011 4.011 29 C -0.205 4.205 30 C -0.115 4.115 31 H 0.124 0.876 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.156 0.844 38 H 0.123 0.877 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.071 0.929 44 H 0.114 0.886 45 H 0.069 0.931 46 H 0.121 0.879 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.205 -11.626 5.331 13.463 hybrid contribution 0.118 1.060 0.124 1.074 sum -4.087 -10.566 5.455 12.573 Atomic orbital electron populations 1.21779 0.93316 1.02325 1.03364 1.22851 0.94872 0.81793 1.01967 1.86593 1.26112 1.30949 1.84615 1.24925 0.79475 0.94307 0.70937 1.90544 1.60194 1.43657 1.46060 1.21830 0.97180 0.88300 1.06482 1.20005 0.89058 0.93541 0.79370 0.93725 1.21418 1.26390 0.93316 1.17263 0.91268 1.25096 0.93985 0.99305 0.94159 1.69868 1.29988 1.33229 1.16668 0.86506 0.80098 0.83298 0.77758 1.20116 1.20844 1.19518 1.86519 1.31854 1.66848 1.39897 1.22920 0.81514 0.74917 0.90346 1.90544 1.54617 1.53190 1.41915 1.22502 0.82606 0.98116 0.93868 0.87302 1.88574 1.22817 1.26020 1.89675 1.23293 0.97025 0.83530 0.97910 1.22758 0.96364 0.97571 1.01073 0.88780 1.21804 1.00273 0.92031 0.86132 1.88114 1.47392 1.59000 1.35135 1.22486 0.87191 0.92545 0.98831 1.22378 1.04817 0.96370 0.96938 1.22584 0.97882 0.93583 0.97448 0.87551 0.90852 0.91592 0.91699 0.91855 0.91805 0.84353 0.87708 0.92296 0.89482 0.91260 0.88768 0.92910 0.88631 0.93121 0.87855 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.29 37.16 0.38 -1.14 16 2 C 0.06 0.81 6.19 37.16 0.23 1.04 16 3 O -0.36 -6.37 10.22 -39.27 -0.40 -6.77 16 4 C 0.46 9.24 7.80 36.00 0.28 9.52 16 5 O -0.52 -11.11 13.34 -22.57 -0.30 -11.41 16 6 C -0.10 -2.20 5.21 -27.88 -0.15 -2.35 16 7 C 0.23 5.87 1.60 -27.88 -0.04 5.82 16 8 H 0.04 1.20 7.01 -51.93 -0.36 0.83 16 9 C -0.55 -14.69 8.78 -34.44 -0.30 -15.00 16 10 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 11 C 0.08 2.10 5.25 -17.82 -0.09 2.01 16 12 N -0.86 -22.18 10.94 55.43 0.61 -21.58 16 13 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 14 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 O -0.34 -8.31 8.23 -43.10 -0.35 -8.67 16 18 C 0.46 11.09 4.89 36.00 0.18 11.27 16 19 O -0.51 -13.93 15.48 -25.35 -0.39 -14.33 16 20 C 0.09 1.71 3.85 -26.68 -0.10 1.61 16 21 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 22 O -0.35 -6.84 10.60 -54.75 -0.58 -7.42 16 23 C 0.06 0.87 6.78 37.68 0.26 1.12 16 24 C -0.16 -1.99 3.04 -90.45 -0.27 -2.27 16 25 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 26 C 0.07 0.83 6.16 36.13 0.22 1.05 16 27 O -0.38 -5.27 10.56 -35.23 -0.37 -5.64 16 28 C 0.07 0.92 6.81 36.81 0.25 1.17 16 29 C -0.17 -2.88 3.93 -27.02 -0.11 -2.99 16 30 C -0.10 -1.50 3.63 -88.68 -0.32 -1.82 16 31 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 36 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 37 H 0.14 3.23 6.26 -51.93 -0.32 2.91 16 38 H 0.10 2.13 8.14 -51.93 -0.42 1.70 16 39 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.07 1.11 7.47 -51.93 -0.39 0.73 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.50 8.13 -51.93 -0.42 0.08 16 44 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.05 0.62 8.11 -51.93 -0.42 0.20 16 46 H 0.10 2.02 5.26 -51.93 -0.27 1.74 16 47 H 0.08 1.62 6.25 -51.93 -0.32 1.29 16 LS Contribution 376.71 15.07 5.68 5.68 Total: -1.00 -31.64 376.71 -7.87 -39.51 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.13 Total: 6.29 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 0.41 Total: 9.05 kcal Atomic # 7 Polarization: -22.18 SS G_CDS: 0.61 Total: -21.58 kcal Atomic # 8 Polarization: -51.82 SS G_CDS: -2.40 Total: -54.22 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.64 -7.87 -39.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650493021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -226.611 kcal (2) G-P(sol) polarization free energy of solvation -31.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds