Wall clock time and date at job start Wed Apr 1 2020 01:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36940 * 119.99775 * 2 1 4 4 H 1.07990 * 120.00020 * 203.00294 * 3 2 1 5 5 C 1.38817 * 119.99902 * 23.00840 * 3 2 1 6 6 N 1.31615 * 120.00089 * 12.07440 * 5 3 2 7 7 Si 1.86797 * 119.99840 * 192.07659 * 5 3 2 8 8 H 1.48504 * 109.47243 * 59.99769 * 7 5 3 9 9 H 1.48496 * 109.47210 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47174 * 299.99844 * 7 5 3 11 11 C 1.46500 * 119.99874 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46933 * 90.00702 * 11 2 1 13 13 H 1.09008 * 109.46767 * 304.99560 * 12 11 2 14 14 O 1.42894 * 109.47353 * 64.99537 * 12 11 2 15 15 C 1.52996 * 109.47136 * 184.99812 * 12 11 2 16 16 N 1.46501 * 109.47338 * 179.97438 * 15 12 11 17 17 C 1.46497 * 119.99816 * 270.00139 * 16 15 12 18 18 C 1.34774 * 119.99542 * 89.99888 * 16 15 12 19 19 O 1.21541 * 120.00446 * 5.01978 * 18 16 15 20 20 C 1.47853 * 119.99583 * 184.74553 * 18 16 15 21 21 C 1.39594 * 120.14259 * 319.98356 * 20 18 16 22 22 C 1.37943 * 119.85183 * 179.69885 * 21 20 18 23 23 C 1.38378 * 120.14187 * 0.59768 * 22 21 20 24 24 C 1.38338 * 120.29254 * 359.67825 * 23 22 21 25 25 C 1.50706 * 119.92518 * 180.02562 * 24 23 22 26 26 F 1.39895 * 109.47140 * 119.97590 * 25 24 23 27 27 F 1.39900 * 109.46721 * 239.97391 * 25 24 23 28 28 C 1.37981 * 120.14787 * 0.02562 * 24 23 22 29 29 H 1.08995 * 109.47386 * 269.37200 * 1 2 3 30 30 H 1.09006 * 109.47224 * 29.37220 * 1 2 3 31 31 H 1.09003 * 109.47063 * 149.37194 * 1 2 3 32 32 H 0.97005 * 120.00114 * 180.02562 * 6 5 3 33 33 H 1.08992 * 109.46964 * 330.00089 * 11 2 1 34 34 H 1.08999 * 109.46583 * 209.99999 * 11 2 1 35 35 H 0.96696 * 114.00090 * 60.00077 * 14 12 11 36 36 H 1.09005 * 109.47152 * 59.99376 * 15 12 11 37 37 H 1.09001 * 109.47316 * 299.99840 * 15 12 11 38 38 H 1.09009 * 109.47214 * 267.15894 * 17 16 15 39 39 H 1.08999 * 109.47713 * 27.15690 * 17 16 15 40 40 H 1.08994 * 109.47299 * 147.16093 * 17 16 15 41 41 H 1.08006 * 120.07345 * 359.97332 * 21 20 18 42 42 H 1.07999 * 119.92504 * 180.29661 * 22 21 20 43 43 H 1.08004 * 119.85193 * 179.69799 * 23 22 21 44 44 H 1.08999 * 109.46892 * 359.97435 * 25 24 23 45 45 H 1.07997 * 120.07626 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1651 1.2232 -0.3655 5 6 1.5383 2.3403 0.4699 6 7 0.4024 2.2614 1.1299 7 14 2.3279 4.0056 0.1654 8 1 2.4517 4.2348 -1.2967 9 1 1.4833 5.0706 0.7631 10 1 3.6762 4.0352 0.7869 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7109 -1.4418 13 1 1.5062 -1.7557 -1.9808 14 8 3.3210 -0.7733 -2.0810 15 6 3.1061 -3.0943 -1.4430 16 7 3.3499 -3.5180 -2.8241 17 6 2.3250 -4.2715 -3.5508 18 6 4.5169 -3.2145 -3.4260 19 8 5.4022 -2.6701 -2.7958 20 6 4.7225 -3.5493 -4.8513 21 6 4.2550 -4.7619 -5.3611 22 6 4.4446 -5.0654 -6.6933 23 6 5.1075 -4.1764 -7.5210 24 6 5.5783 -2.9756 -7.0208 25 6 6.2985 -2.0133 -7.9298 26 9 5.6044 -0.7993 -7.9678 27 9 7.5931 -1.7953 -7.4463 28 6 5.3899 -2.6571 -5.6916 29 1 -0.3634 -0.0113 1.0275 30 1 -0.3634 0.8956 -0.5041 31 1 -0.3633 -0.8843 -0.5236 32 1 -0.0250 3.0681 1.4580 33 1 1.6084 -2.0281 0.5147 34 1 3.1499 -1.1381 0.5144 35 1 4.1836 -0.6817 -1.6538 36 1 2.4437 -3.8096 -0.9554 37 1 4.0524 -3.0496 -0.9040 38 1 2.5058 -5.3398 -3.4306 39 1 1.3409 -4.0228 -3.1535 40 1 2.3657 -4.0129 -4.6088 41 1 3.7421 -5.4589 -4.7148 42 1 4.0792 -6.0011 -7.0899 43 1 5.2576 -4.4210 -8.5622 44 1 6.3517 -2.4330 -8.9344 45 1 5.7576 -1.7192 -5.3024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755806387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:14 Heat of formation + Delta-G solvation = -119.692221 kcal Electronic energy + Delta-G solvation = -30205.918785 eV Core-core repulsion = 25667.701099 eV Total energy + Delta-G solvation = -4538.217686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.154 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.23417 -47.22062 -40.63304 -38.83545 -37.16326 -35.49030 -34.52831 -32.65485 -31.62300 -31.28078 -29.53811 -27.27475 -26.43481 -26.05094 -25.59317 -23.69121 -22.23665 -21.86747 -20.42449 -19.83183 -17.91845 -17.65502 -17.45004 -16.99481 -16.78377 -16.33715 -16.17871 -15.90211 -15.17226 -14.86168 -14.77350 -14.47759 -14.35230 -14.15716 -13.63318 -13.58683 -13.56707 -13.53294 -13.21146 -13.04518 -12.89356 -12.77050 -12.64717 -12.04783 -11.87977 -11.84691 -11.55245 -11.24437 -11.01946 -10.77828 -10.61849 -10.55043 -10.32308 -10.00359 -9.88916 -9.82362 -9.61595 -9.46892 -9.34683 -8.60552 -8.33535 -6.62239 -5.63966 -3.07468 0.48908 0.80380 2.57925 2.86051 3.35831 3.37563 3.48038 3.51939 3.55957 3.80294 4.10996 4.28134 4.51253 4.57828 4.59299 4.72063 4.73281 4.93921 4.98903 5.05024 5.08667 5.22956 5.24903 5.44058 5.48851 5.51052 5.53789 5.71125 5.80585 5.86058 5.89693 5.90124 5.98827 6.08870 6.32295 6.46574 6.53203 6.74128 6.82922 7.29416 7.42708 7.73760 7.94125 8.12233 8.41614 8.52011 9.33470 9.95432 10.43792 11.42864 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.012442 B = 0.002900 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.916518 B = 9652.527881 C =11202.879872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.593 5.593 3 C -0.239 4.239 4 H 0.069 0.931 5 C -0.004 4.004 6 N -0.915 5.915 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.292 1.292 10 H -0.284 1.284 11 C 0.125 3.875 12 C 0.072 3.928 13 H 0.085 0.915 14 O -0.542 6.542 15 C 0.080 3.920 16 N -0.601 5.601 17 C 0.071 3.929 18 C 0.564 3.436 19 O -0.526 6.526 20 C -0.122 4.122 21 C -0.076 4.076 22 C -0.130 4.130 23 C -0.068 4.068 24 C -0.179 4.179 25 C 0.315 3.685 26 F -0.196 7.196 27 F -0.198 7.198 28 C -0.023 4.023 29 H 0.022 0.978 30 H 0.052 0.948 31 H -0.009 1.009 32 H 0.251 0.749 33 H 0.042 0.958 34 H 0.051 0.949 35 H 0.368 0.632 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.133 0.867 44 H 0.119 0.881 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.623 -20.343 -18.478 28.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.315 5.315 3 C -0.368 4.368 4 H 0.087 0.913 5 C -0.201 4.201 6 N -0.561 5.561 7 Si 0.736 3.264 8 H -0.211 1.211 9 H -0.218 1.218 10 H -0.210 1.210 11 C -0.004 4.004 12 C 0.008 3.992 13 H 0.103 0.897 14 O -0.346 6.346 15 C -0.043 4.043 16 N -0.333 5.333 17 C -0.072 4.072 18 C 0.352 3.648 19 O -0.403 6.403 20 C -0.125 4.125 21 C -0.095 4.095 22 C -0.148 4.148 23 C -0.086 4.086 24 C -0.179 4.179 25 C 0.261 3.739 26 F -0.177 7.177 27 F -0.179 7.179 28 C -0.042 4.042 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.009 0.991 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.215 0.785 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.158 0.842 42 H 0.154 0.846 43 H 0.151 0.849 44 H 0.136 0.864 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.456 -19.787 -18.412 27.789 hybrid contribution 0.616 0.911 0.246 1.127 sum 7.072 -18.876 -18.166 27.135 Atomic orbital electron populations 1.20778 0.82730 0.96368 0.98198 1.43741 1.01647 1.00466 1.85626 1.19180 0.98234 0.85413 1.34021 0.91286 1.25000 0.97972 0.98533 0.98589 1.70059 1.19081 1.27134 1.39835 0.86316 0.78373 0.83799 0.77955 1.21102 1.21820 1.21010 1.21316 0.96922 0.89471 0.92688 1.23176 0.92888 0.85511 0.97639 0.89660 1.86558 1.28845 1.63038 1.56182 1.22466 1.02483 0.98106 0.81248 1.47587 1.15819 1.55333 1.14599 1.22124 0.92172 0.95087 0.97795 1.18102 0.82132 0.78477 0.86100 1.90773 1.42120 1.42102 1.65270 1.19956 1.01972 0.96276 0.94332 1.21792 0.96107 0.95631 0.95925 1.21080 1.00206 1.00087 0.93446 1.21094 0.95229 0.92144 1.00176 1.20323 1.04918 0.97366 0.95341 1.20365 0.74945 0.80806 0.97778 1.93052 1.79342 1.47801 1.97554 1.93038 1.39126 1.95335 1.90407 1.21052 0.92553 0.98993 0.91584 0.96001 0.92912 0.99073 0.93891 0.93957 0.93026 0.78545 0.89900 0.89460 0.92445 0.90569 0.90643 0.84230 0.84618 0.84870 0.86352 0.84321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.12 8.98 59.85 0.54 4.66 16 2 N -0.59 -15.18 2.90 -181.12 -0.53 -15.71 16 3 C -0.24 -6.79 9.21 -15.06 -0.14 -6.92 16 4 H 0.07 1.95 7.57 -52.49 -0.40 1.55 16 5 C 0.00 -0.11 5.08 -17.43 -0.09 -0.20 16 6 N -0.91 -27.50 10.69 55.49 0.59 -26.90 16 7 Si 0.91 23.03 29.57 -169.99 -5.03 18.00 16 8 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 9 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 10 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 11 C 0.13 2.51 5.35 -4.04 -0.02 2.49 16 12 C 0.07 1.26 3.48 -26.73 -0.09 1.16 16 13 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 14 O -0.54 -11.14 11.49 -37.05 -0.43 -11.57 16 15 C 0.08 1.09 5.16 -4.04 -0.02 1.06 16 16 N -0.60 -7.59 2.83 -182.70 -0.52 -8.11 16 17 C 0.07 0.61 8.89 59.85 0.53 1.14 16 18 C 0.56 8.24 6.77 -12.33 -0.08 8.16 16 19 O -0.53 -9.51 15.63 3.51 0.05 -9.46 16 20 C -0.12 -1.46 5.21 -104.97 -0.55 -2.01 16 21 C -0.08 -0.63 7.55 -39.18 -0.30 -0.92 16 22 C -0.13 -0.82 10.03 -39.64 -0.40 -1.22 16 23 C -0.07 -0.45 9.66 -39.49 -0.38 -0.83 16 24 C -0.18 -1.69 5.37 -104.68 -0.56 -2.25 16 25 C 0.31 2.74 5.45 36.01 0.20 2.94 16 26 F -0.20 -2.26 17.25 2.25 0.04 -2.22 16 27 F -0.20 -2.18 17.25 2.25 0.04 -2.15 16 28 C -0.02 -0.28 9.18 -39.19 -0.36 -0.64 16 29 H 0.02 0.58 7.67 -51.93 -0.40 0.18 16 30 H 0.05 1.45 6.92 -51.93 -0.36 1.09 16 31 H -0.01 -0.20 8.08 -51.93 -0.42 -0.62 16 32 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 34 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 35 H 0.37 7.22 8.62 45.56 0.39 7.61 16 36 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 37 H 0.09 1.27 7.36 -51.93 -0.38 0.88 16 38 H 0.06 0.34 7.00 -51.92 -0.36 -0.02 16 39 H 0.08 0.62 8.05 -51.93 -0.42 0.21 16 40 H 0.08 0.62 5.73 -51.93 -0.30 0.32 16 41 H 0.14 0.85 5.44 -52.48 -0.29 0.57 16 42 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 43 H 0.13 0.43 7.94 -52.48 -0.42 0.01 16 44 H 0.12 0.51 7.87 -51.93 -0.41 0.10 16 45 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 379.32 15.07 5.72 5.72 Total: -1.00 -36.12 379.32 -7.19 -43.31 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.41 Total: 2.48 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -1.72 Total: 6.61 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.45 Total: -50.72 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.37 Total: -21.03 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.08 Total: -4.37 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.03 Total: 18.00 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.12 -7.19 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755806387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.387 kcal (2) G-P(sol) polarization free energy of solvation -36.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds