Wall clock time and date at job start Wed Apr 1 2020 01:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36940 * 119.99775 * 2 1 4 4 H 1.07990 * 120.00020 * 203.00294 * 3 2 1 5 5 C 1.38817 * 119.99902 * 23.00840 * 3 2 1 6 6 N 1.31615 * 120.00089 * 12.07440 * 5 3 2 7 7 Si 1.86797 * 119.99840 * 192.07659 * 5 3 2 8 8 H 1.48504 * 109.47243 * 59.99769 * 7 5 3 9 9 H 1.48496 * 109.47210 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47174 * 299.99844 * 7 5 3 11 11 C 1.46500 * 119.99874 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46933 * 90.00702 * 11 2 1 13 13 H 1.09008 * 109.46767 * 304.99560 * 12 11 2 14 14 O 1.42894 * 109.47353 * 64.99537 * 12 11 2 15 15 C 1.52996 * 109.47136 * 184.99812 * 12 11 2 16 16 N 1.46501 * 109.47338 * 179.97438 * 15 12 11 17 17 C 1.46497 * 119.99816 * 270.00139 * 16 15 12 18 18 C 1.34774 * 119.99542 * 89.99888 * 16 15 12 19 19 O 1.21541 * 120.00446 * 5.01978 * 18 16 15 20 20 C 1.47853 * 119.99583 * 184.74553 * 18 16 15 21 21 C 1.39594 * 120.14259 * 319.98356 * 20 18 16 22 22 C 1.37943 * 119.85183 * 179.69885 * 21 20 18 23 23 C 1.38378 * 120.14187 * 0.59768 * 22 21 20 24 24 C 1.38338 * 120.29254 * 359.67825 * 23 22 21 25 25 C 1.50706 * 119.92518 * 180.02562 * 24 23 22 26 26 F 1.39895 * 109.47140 * 119.97590 * 25 24 23 27 27 F 1.39900 * 109.46721 * 239.97391 * 25 24 23 28 28 C 1.37981 * 120.14787 * 0.02562 * 24 23 22 29 29 H 1.08995 * 109.47386 * 269.37200 * 1 2 3 30 30 H 1.09006 * 109.47224 * 29.37220 * 1 2 3 31 31 H 1.09003 * 109.47063 * 149.37194 * 1 2 3 32 32 H 0.97005 * 120.00114 * 180.02562 * 6 5 3 33 33 H 1.08992 * 109.46964 * 330.00089 * 11 2 1 34 34 H 1.08999 * 109.46583 * 209.99999 * 11 2 1 35 35 H 0.96696 * 114.00090 * 60.00077 * 14 12 11 36 36 H 1.09005 * 109.47152 * 59.99376 * 15 12 11 37 37 H 1.09001 * 109.47316 * 299.99840 * 15 12 11 38 38 H 1.09009 * 109.47214 * 267.15894 * 17 16 15 39 39 H 1.08999 * 109.47713 * 27.15690 * 17 16 15 40 40 H 1.08994 * 109.47299 * 147.16093 * 17 16 15 41 41 H 1.08006 * 120.07345 * 359.97332 * 21 20 18 42 42 H 1.07999 * 119.92504 * 180.29661 * 22 21 20 43 43 H 1.08004 * 119.85193 * 179.69799 * 23 22 21 44 44 H 1.08999 * 109.46892 * 359.97435 * 25 24 23 45 45 H 1.07997 * 120.07626 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1651 1.2232 -0.3655 5 6 1.5383 2.3403 0.4699 6 7 0.4024 2.2614 1.1299 7 14 2.3279 4.0056 0.1654 8 1 2.4517 4.2348 -1.2967 9 1 1.4833 5.0706 0.7631 10 1 3.6762 4.0352 0.7869 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7109 -1.4418 13 1 1.5062 -1.7557 -1.9808 14 8 3.3210 -0.7733 -2.0810 15 6 3.1061 -3.0943 -1.4430 16 7 3.3499 -3.5180 -2.8241 17 6 2.3250 -4.2715 -3.5508 18 6 4.5169 -3.2145 -3.4260 19 8 5.4022 -2.6701 -2.7958 20 6 4.7225 -3.5493 -4.8513 21 6 4.2550 -4.7619 -5.3611 22 6 4.4446 -5.0654 -6.6933 23 6 5.1075 -4.1764 -7.5210 24 6 5.5783 -2.9756 -7.0208 25 6 6.2985 -2.0133 -7.9298 26 9 5.6044 -0.7993 -7.9678 27 9 7.5931 -1.7953 -7.4463 28 6 5.3899 -2.6571 -5.6916 29 1 -0.3634 -0.0113 1.0275 30 1 -0.3634 0.8956 -0.5041 31 1 -0.3633 -0.8843 -0.5236 32 1 -0.0250 3.0681 1.4580 33 1 1.6084 -2.0281 0.5147 34 1 3.1499 -1.1381 0.5144 35 1 4.1836 -0.6817 -1.6538 36 1 2.4437 -3.8096 -0.9554 37 1 4.0524 -3.0496 -0.9040 38 1 2.5058 -5.3398 -3.4306 39 1 1.3409 -4.0228 -3.1535 40 1 2.3657 -4.0129 -4.6088 41 1 3.7421 -5.4589 -4.7148 42 1 4.0792 -6.0011 -7.0899 43 1 5.2576 -4.4210 -8.5622 44 1 6.3517 -2.4330 -8.9344 45 1 5.7576 -1.7192 -5.3024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755806387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:13 Heat of formation + Delta-G solvation = -144.989813 kcal Electronic energy + Delta-G solvation = -30207.015771 eV Core-core repulsion = 25667.701099 eV Total energy + Delta-G solvation = -4539.314672 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.154 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.99539 -48.01282 -41.54435 -39.72745 -38.64836 -36.85623 -36.17697 -33.50190 -33.22987 -32.28660 -30.96747 -28.31432 -27.91210 -27.28151 -26.92811 -24.80974 -23.33648 -22.85401 -22.14575 -20.77791 -18.92553 -18.66402 -18.35538 -18.22055 -17.80656 -17.55128 -17.07633 -16.90895 -16.82230 -16.34806 -16.10762 -15.63383 -15.34350 -15.04730 -14.98822 -14.95290 -14.61995 -14.43095 -14.39815 -14.25918 -13.87500 -13.72911 -13.70804 -13.34415 -13.10518 -12.81509 -12.74909 -12.63909 -12.56410 -12.50617 -12.26893 -12.11666 -11.92001 -11.89334 -11.84692 -11.23599 -10.98977 -10.59037 -10.11793 -10.06222 -9.62729 -8.68268 -7.83636 -5.28377 -0.17214 0.11099 1.41718 1.44703 1.51388 1.61202 1.98609 2.50145 2.61443 2.75310 3.24112 3.29665 3.35270 3.55799 3.64625 3.75282 3.87024 4.01252 4.03473 4.05434 4.16094 4.20671 4.27571 4.41153 4.47984 4.54147 4.58507 4.68675 4.75753 4.81467 4.82172 4.88314 4.92538 5.16849 5.23262 5.24700 5.26598 5.35388 5.47289 5.62722 5.70830 5.76699 6.31647 6.34821 6.86825 7.08745 7.17355 7.88565 8.30017 9.20603 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.012442 B = 0.002900 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.916518 B = 9652.527881 C =11202.879872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.612 5.612 3 C -0.243 4.243 4 H 0.063 0.937 5 C -0.058 4.058 6 N -0.941 5.941 7 Si 0.963 3.037 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.277 1.277 11 C 0.123 3.877 12 C 0.081 3.919 13 H 0.081 0.919 14 O -0.566 6.566 15 C 0.091 3.909 16 N -0.600 5.600 17 C 0.063 3.937 18 C 0.553 3.447 19 O -0.579 6.579 20 C -0.148 4.148 21 C -0.070 4.070 22 C -0.118 4.118 23 C -0.053 4.053 24 C -0.190 4.190 25 C 0.304 3.696 26 F -0.219 7.219 27 F -0.217 7.217 28 C -0.059 4.059 29 H 0.001 0.999 30 H 0.019 0.981 31 H 0.030 0.970 32 H 0.247 0.753 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.367 0.633 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.165 0.835 42 H 0.181 0.819 43 H 0.180 0.820 44 H 0.176 0.824 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.032 -24.053 -21.064 32.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.335 5.335 3 C -0.374 4.374 4 H 0.081 0.919 5 C -0.252 4.252 6 N -0.589 5.589 7 Si 0.792 3.208 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.203 1.203 11 C -0.004 4.004 12 C 0.018 3.982 13 H 0.099 0.901 14 O -0.371 6.371 15 C -0.033 4.033 16 N -0.331 5.331 17 C -0.079 4.079 18 C 0.343 3.657 19 O -0.460 6.460 20 C -0.151 4.151 21 C -0.088 4.088 22 C -0.135 4.135 23 C -0.071 4.071 24 C -0.191 4.191 25 C 0.251 3.749 26 F -0.200 7.200 27 F -0.199 7.199 28 C -0.078 4.078 29 H 0.019 0.981 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.214 0.786 36 H 0.139 0.861 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.182 0.818 42 H 0.198 0.802 43 H 0.197 0.803 44 H 0.192 0.808 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.854 -23.552 -21.019 32.106 hybrid contribution 0.794 1.939 0.978 2.312 sum 6.647 -21.613 -20.042 30.215 Atomic orbital electron populations 1.20537 0.82738 0.96534 0.97001 1.43979 1.02033 1.01548 1.85943 1.19407 0.98137 0.86937 1.32907 0.91905 1.25681 0.98817 1.01519 0.99165 1.70198 1.20232 1.27420 1.41089 0.85406 0.77803 0.80234 0.77392 1.21424 1.21624 1.20275 1.21524 0.96420 0.87963 0.94539 1.23017 0.92642 0.87260 0.95232 0.90130 1.86525 1.29149 1.64463 1.56947 1.22229 1.02192 0.96416 0.82449 1.47684 1.16094 1.54983 1.14321 1.22456 0.91178 0.96604 0.97632 1.18710 0.82085 0.77635 0.87256 1.90727 1.44023 1.44568 1.66643 1.19847 1.04274 0.98280 0.92728 1.22084 0.95267 0.94043 0.97396 1.21639 0.98373 1.01236 0.92245 1.21651 0.92881 0.90154 1.02389 1.20522 1.05486 0.98982 0.94060 1.21088 0.73679 0.79899 1.00184 1.93001 1.79827 1.49453 1.97713 1.92992 1.40523 1.95422 1.90936 1.20922 0.94842 0.98335 0.93692 0.98057 0.96196 0.95123 0.94393 0.91071 0.93768 0.78601 0.86063 0.90760 0.88757 0.89835 0.90200 0.81815 0.80169 0.80284 0.80756 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.93 8.98 127.77 1.15 10.08 16 2 N -0.61 -31.64 2.90 -726.94 -2.11 -33.75 16 3 C -0.24 -14.14 9.21 84.03 0.77 -13.36 16 4 H 0.06 3.66 7.57 -2.92 -0.02 3.64 16 5 C -0.06 -3.42 5.08 84.86 0.43 -2.99 16 6 N -0.94 -57.93 10.69 21.65 0.23 -57.70 16 7 Si 0.96 48.54 29.57 68.60 2.03 50.57 16 8 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 9 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 10 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 11 C 0.12 4.87 5.35 86.38 0.46 5.33 16 12 C 0.08 2.82 3.48 30.59 0.11 2.93 16 13 H 0.08 2.90 8.14 -2.38 -0.02 2.88 16 14 O -0.57 -24.22 11.49 -147.24 -1.69 -25.92 16 15 C 0.09 2.35 5.16 86.38 0.45 2.80 16 16 N -0.60 -14.45 2.83 -850.21 -2.40 -16.86 16 17 C 0.06 0.86 8.89 127.77 1.14 2.00 16 18 C 0.55 16.63 6.77 86.79 0.59 17.22 16 19 O -0.58 -22.54 15.63 -2.10 -0.03 -22.58 16 20 C -0.15 -3.53 5.21 -20.09 -0.10 -3.64 16 21 C -0.07 -0.92 7.55 22.53 0.17 -0.75 16 22 C -0.12 -0.87 10.03 22.23 0.22 -0.65 16 23 C -0.05 -0.46 9.66 22.33 0.22 -0.25 16 24 C -0.19 -3.37 5.37 -19.90 -0.11 -3.48 16 25 C 0.30 5.02 5.45 71.24 0.39 5.40 16 26 F -0.22 -5.16 17.25 44.97 0.78 -4.38 16 27 F -0.22 -4.93 17.25 44.97 0.78 -4.15 16 28 C -0.06 -1.54 9.18 22.53 0.21 -1.33 16 29 H 0.00 0.06 7.67 -2.39 -0.02 0.04 16 30 H 0.02 1.10 6.92 -2.38 -0.02 1.08 16 31 H 0.03 1.27 8.08 -2.39 -0.02 1.26 16 32 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 33 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 34 H 0.04 1.81 8.04 -2.39 -0.02 1.79 16 35 H 0.37 15.47 8.62 -74.06 -0.64 14.83 16 36 H 0.12 2.22 8.07 -2.38 -0.02 2.20 16 37 H 0.07 2.16 7.36 -2.39 -0.02 2.14 16 38 H 0.09 0.64 7.00 -2.38 -0.02 0.63 16 39 H 0.08 1.07 8.05 -2.39 -0.02 1.05 16 40 H 0.08 1.06 5.73 -2.39 -0.01 1.05 16 41 H 0.16 1.24 5.44 -2.91 -0.02 1.23 16 42 H 0.18 -0.16 8.06 -2.91 -0.02 -0.19 16 43 H 0.18 -0.07 7.94 -2.91 -0.02 -0.09 16 44 H 0.18 0.85 7.87 -2.39 -0.02 0.83 16 45 H 0.10 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -85.85 379.32 4.04 -81.80 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.39 Total: 13.64 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 6.08 Total: 19.31 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -4.28 Total: -108.31 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -1.73 Total: -48.49 kcal Atomic # 9 Polarization: -10.09 SS G_CDS: 1.55 Total: -8.53 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.03 Total: 50.57 kcal Total: -85.85 4.04 -81.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755806387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.186 kcal (2) G-P(sol) polarization free energy of solvation -85.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds