Wall clock time and date at job start Wed Apr 1 2020 01:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99844 * 2 1 4 4 H 1.48508 * 109.46800 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47481 * 30.00065 * 3 2 1 6 6 H 1.48503 * 109.47086 * 150.00137 * 3 2 1 7 7 C 1.37871 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00449 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99753 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.49985 * 59.93423 * 9 7 2 11 11 C 1.53042 * 109.49755 * 179.97438 * 9 7 2 12 12 C 1.53032 * 109.53802 * 181.31443 * 11 9 7 13 13 C 1.53188 * 109.31498 * 298.63750 * 12 11 9 14 14 N 1.46929 * 108.77819 * 54.63523 * 13 12 11 15 15 C 1.34776 * 120.63251 * 126.36454 * 14 13 12 16 16 O 1.21584 * 119.99718 * 185.30542 * 15 14 13 17 17 N 1.34779 * 119.99929 * 5.31270 * 15 14 13 18 18 C 1.40008 * 119.99589 * 184.80510 * 17 15 14 19 19 C 1.38886 * 120.00025 * 144.91107 * 18 17 15 20 20 C 1.38028 * 119.99092 * 179.97438 * 19 18 17 21 21 C 1.38843 * 120.00671 * 359.97438 * 20 19 18 22 22 N 1.40329 * 119.99530 * 180.02562 * 21 20 19 23 23 C 1.35038 * 127.38704 * 179.97438 * 22 21 20 24 24 N 1.30749 * 107.27931 * 179.97438 * 23 22 21 25 25 N 1.28426 * 110.64050 * 359.97438 * 24 23 22 26 26 N 1.28944 * 110.19988 * 0.02562 * 25 24 23 27 27 C 1.38836 * 120.00834 * 0.27008 * 21 20 19 28 28 C 1.38028 * 120.00533 * 359.49515 * 27 21 20 29 29 C 1.46927 * 118.73541 * 306.64350 * 14 13 12 30 30 H 0.96999 * 119.99860 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.45693 * 61.29623 * 11 9 7 32 32 H 1.08997 * 109.46214 * 301.34044 * 11 9 7 33 33 H 1.08998 * 109.50119 * 178.68109 * 12 11 9 34 34 H 1.08997 * 109.49757 * 58.58984 * 12 11 9 35 35 H 1.09000 * 109.59195 * 294.84670 * 13 12 11 36 36 H 1.09006 * 109.70343 * 174.49261 * 13 12 11 37 37 H 0.96998 * 120.00135 * 4.79768 * 17 15 14 38 38 H 1.08001 * 120.00816 * 359.94763 * 19 18 17 39 39 H 1.08001 * 119.99712 * 179.97438 * 20 19 18 40 40 H 1.08007 * 126.36161 * 0.02562 * 23 22 21 41 41 H 1.08001 * 119.99609 * 179.73062 * 27 21 20 42 42 H 1.08006 * 119.99931 * 180.25347 * 28 27 21 43 43 H 1.08999 * 109.58521 * 173.13985 * 29 14 13 44 44 H 1.08999 * 109.58550 * 293.57248 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0000 10 1 3.8757 -0.6787 0.8887 11 6 4.0223 -2.6367 0.0014 12 6 5.5523 -2.6379 0.0339 13 6 6.0863 -1.9371 -1.2193 14 7 5.4856 -0.5990 -1.3052 15 6 6.2621 0.4957 -1.4282 16 8 5.7605 1.6029 -1.4012 17 7 7.5946 0.3630 -1.5812 18 6 8.4127 1.4989 -1.6080 19 6 9.6850 1.4516 -1.0532 20 6 10.4915 2.5714 -1.0802 21 6 10.0312 3.7448 -1.6624 22 7 10.8516 4.8830 -1.6901 23 6 10.5583 6.0925 -2.2140 24 7 11.5995 6.8604 -2.0252 25 7 12.5310 6.2186 -1.4170 26 7 12.1549 5.0087 -1.1776 27 6 8.7574 3.7937 -2.2125 28 6 7.9523 2.6728 -2.1901 29 6 4.0226 -0.4764 -1.2481 30 1 -0.4850 0.8400 -0.0004 31 1 3.6779 -3.1447 -0.8994 32 1 3.6400 -3.1565 0.8798 33 1 5.9149 -3.6655 0.0585 34 1 5.8977 -2.1084 0.9218 35 1 5.8182 -2.5153 -2.1036 36 1 7.1708 -1.8475 -1.1564 37 1 7.9868 -0.5194 -1.6727 38 1 10.0432 0.5389 -0.6003 39 1 11.4808 2.5348 -0.6484 40 1 9.6347 6.3737 -2.6983 41 1 8.3979 4.7078 -2.6614 42 1 6.9630 2.7098 -2.6217 43 1 3.7457 0.5768 -1.2014 44 1 3.5828 -0.9332 -2.1346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596645021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:45 Heat of formation + Delta-G solvation = 140.701320 kcal Electronic energy + Delta-G solvation = -29070.100944 eV Core-core repulsion = 25026.156706 eV Total energy + Delta-G solvation = -4043.944237 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.50773 -41.01716 -39.51165 -37.51486 -35.88624 -34.31164 -33.30063 -32.70417 -32.12861 -31.46942 -30.69617 -29.29050 -25.68506 -25.38867 -24.51332 -24.36631 -22.36153 -22.26352 -22.20742 -20.39569 -19.23788 -19.02773 -18.53934 -17.49006 -16.92205 -16.80075 -16.49260 -15.81818 -15.55685 -15.09656 -14.70113 -14.39238 -14.17419 -14.12174 -13.94285 -13.71581 -13.61982 -13.49614 -13.21777 -13.07386 -12.74087 -12.52926 -12.36303 -12.08778 -11.66536 -11.49567 -11.37930 -11.18789 -10.84702 -10.76430 -10.56971 -10.39518 -10.24001 -10.02773 -9.81589 -9.49593 -9.37784 -9.21670 -8.71432 -8.48444 -8.15096 -6.18536 -4.21017 -0.01658 0.85498 1.25372 1.42186 1.92777 2.47788 2.99733 3.30094 3.37587 3.39268 3.50299 3.67537 3.75525 3.89663 4.32355 4.34199 4.45783 4.54507 4.74881 4.82920 4.98912 5.00392 5.10472 5.12075 5.13699 5.26085 5.32562 5.51682 5.59531 5.77909 5.82294 5.86707 5.95083 5.98275 6.01081 6.11813 6.23531 6.36411 6.42517 6.55628 6.58407 6.64383 6.89100 7.05945 7.32004 7.62034 7.83099 8.05162 8.37597 8.49868 8.84330 9.42250 10.93222 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.017667 B = 0.002597 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.514746 B =10778.276311 C =12025.424461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.262 1.262 7 C -0.518 4.518 8 H 0.078 0.922 9 C 0.004 3.996 10 H 0.031 0.969 11 C -0.101 4.101 12 C -0.136 4.136 13 C 0.112 3.888 14 N -0.615 5.615 15 C 0.700 3.300 16 O -0.572 6.572 17 N -0.691 5.691 18 C 0.192 3.808 19 C -0.133 4.133 20 C -0.077 4.077 21 C 0.095 3.905 22 N -0.316 5.316 23 C 0.223 3.777 24 N -0.332 5.332 25 N -0.040 5.040 26 N -0.082 5.082 27 C -0.095 4.095 28 C -0.100 4.100 29 C 0.117 3.883 30 H 0.266 0.734 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.408 0.592 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.239 0.761 41 H 0.137 0.863 42 H 0.160 0.840 43 H 0.082 0.918 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.184 0.472 -6.051 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.130 4.130 3 Si 0.710 3.290 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.187 1.187 7 C -0.556 4.556 8 H 0.096 0.904 9 C -0.016 4.016 10 H 0.049 0.951 11 C -0.138 4.138 12 C -0.175 4.175 13 C -0.012 4.012 14 N -0.350 5.350 15 C 0.402 3.598 16 O -0.449 6.449 17 N -0.341 5.341 18 C 0.094 3.906 19 C -0.154 4.154 20 C -0.097 4.097 21 C 0.002 3.998 22 N -0.105 5.105 23 C -0.074 4.074 24 N -0.182 5.182 25 N -0.035 5.035 26 N -0.067 5.067 27 C -0.117 4.117 28 C -0.121 4.121 29 C -0.004 4.004 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.247 0.753 38 H 0.158 0.842 39 H 0.161 0.839 40 H 0.255 0.745 41 H 0.155 0.845 42 H 0.177 0.823 43 H 0.099 0.901 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 20.881 1.647 -5.556 21.670 hybrid contribution -0.397 0.098 -0.266 0.487 sum 20.484 1.745 -5.822 21.367 Atomic orbital electron populations 1.69888 1.06289 1.27240 1.49684 1.25063 0.94784 0.99155 0.94043 0.86967 0.79711 0.83381 0.78911 1.19978 1.22310 1.18705 1.20929 0.88047 0.94671 1.51920 0.90396 1.19429 0.96932 0.92203 0.93011 0.95135 1.21438 0.91757 0.98885 1.01749 1.21982 0.98854 0.99566 0.97049 1.21661 0.96122 0.83797 0.99599 1.47775 1.08288 1.04356 1.74625 1.15937 0.80352 0.85313 0.78210 1.90914 1.72418 1.23954 1.57622 1.42988 1.06150 1.08415 1.76508 1.17722 0.90198 0.87780 0.94883 1.20816 0.93755 0.99422 1.01421 1.20662 1.00713 0.90159 0.98213 1.17539 0.90557 0.84914 1.06826 1.49055 1.12397 1.10281 1.38814 1.27433 1.01506 0.81629 0.96813 1.74490 0.98559 1.27333 1.17833 1.78065 1.19516 0.97761 1.08151 1.82632 0.90964 1.14379 1.18716 1.20768 0.90823 1.00017 1.00087 1.21329 1.01234 0.91028 0.98489 1.22565 0.73735 1.02802 1.01271 0.92430 0.92369 0.92040 0.91415 0.91931 0.91030 0.91682 0.75318 0.84183 0.83863 0.74505 0.84474 0.82293 0.90052 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 2 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 3 Si 0.88 22.27 24.32 -169.99 -4.13 18.13 16 4 H -0.27 -6.89 6.92 56.52 0.39 -6.49 16 5 H -0.30 -7.53 7.11 56.52 0.40 -7.12 16 6 H -0.26 -6.66 6.53 56.52 0.37 -6.30 16 7 C -0.52 -13.66 9.15 -34.44 -0.31 -13.97 16 8 H 0.08 2.20 7.99 -52.49 -0.42 1.79 16 9 C 0.00 0.09 1.83 -91.87 -0.17 -0.08 16 10 H 0.03 0.72 7.19 -51.93 -0.37 0.34 16 11 C -0.10 -1.71 5.11 -26.69 -0.14 -1.84 16 12 C -0.14 -1.72 6.08 -26.62 -0.16 -1.88 16 13 C 0.11 1.27 6.35 -3.71 -0.02 1.24 16 14 N -0.62 -9.88 2.98 -178.76 -0.53 -10.41 16 15 C 0.70 11.22 8.14 -86.92 -0.71 10.51 16 16 O -0.57 -11.39 13.18 5.29 0.07 -11.32 16 17 N -0.69 -7.66 5.21 -14.20 -0.07 -7.73 16 18 C 0.19 2.03 6.30 -83.65 -0.53 1.50 16 19 C -0.13 -1.10 9.96 -39.42 -0.39 -1.49 16 20 C -0.08 -0.67 9.69 -39.43 -0.38 -1.05 16 21 C 0.09 0.88 6.71 -83.52 -0.56 0.32 16 22 N -0.32 -3.16 3.86 -11.72 -0.05 -3.21 16 23 C 0.22 1.88 12.15 -90.17 -1.10 0.79 16 24 N -0.33 -3.85 12.15 29.64 0.36 -3.49 16 25 N -0.04 -0.52 13.39 60.35 0.81 0.29 16 26 N -0.08 -0.99 13.33 60.35 0.80 -0.19 16 27 C -0.10 -0.83 9.48 -39.44 -0.37 -1.21 16 28 C -0.10 -1.10 8.69 -39.42 -0.34 -1.45 16 29 C 0.12 2.38 5.10 -3.93 -0.02 2.36 16 30 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.50 5.74 -51.93 -0.30 0.21 16 37 H 0.41 3.13 6.41 -40.82 -0.26 2.87 16 38 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.14 1.13 7.76 -52.49 -0.41 0.72 16 40 H 0.24 0.78 7.19 -52.48 -0.38 0.41 16 41 H 0.14 0.79 6.87 -52.49 -0.36 0.42 16 42 H 0.16 2.07 6.21 -52.48 -0.33 1.75 16 43 H 0.08 1.90 2.31 -51.93 -0.12 1.78 16 44 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 356.01 15.07 5.37 5.37 Total: -1.00 -34.68 356.01 -6.99 -41.67 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.08 Total: 0.95 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -5.30 Total: -4.31 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 2.09 Total: -50.49 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.07 Total: -11.32 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.13 Total: 18.13 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.68 -6.99 -41.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596645021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.372 kcal (2) G-P(sol) polarization free energy of solvation -34.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds