Wall clock time and date at job start Wed Apr 1 2020 00:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36929 * 120.00066 * 2 1 4 4 H 1.08005 * 120.00012 * 130.82590 * 3 2 1 5 5 C 1.38813 * 120.00364 * 310.82912 * 3 2 1 6 6 N 1.31615 * 120.00387 * 183.06634 * 5 3 2 7 7 Si 1.86807 * 119.99852 * 3.06545 * 5 3 2 8 8 H 1.48494 * 109.47189 * 94.37972 * 7 5 3 9 9 H 1.48497 * 109.46931 * 214.38382 * 7 5 3 10 10 H 1.48500 * 109.46656 * 334.37975 * 7 5 3 11 11 C 1.46494 * 119.99716 * 180.02562 * 2 1 3 12 12 H 1.09007 * 110.88643 * 182.42595 * 11 2 1 13 13 C 1.55158 * 111.03770 * 306.32354 * 11 2 1 14 14 C 1.54339 * 103.02091 * 153.40008 * 13 11 2 15 15 N 1.47019 * 107.26416 * 338.13898 * 14 13 11 16 16 C 1.34773 * 125.64528 * 178.85116 * 15 14 13 17 17 O 1.21556 * 120.00184 * 185.47352 * 16 15 14 18 18 C 1.47820 * 120.00154 * 5.46927 * 16 15 14 19 19 C 1.39661 * 120.02205 * 173.35628 * 18 16 15 20 20 C 1.37730 * 119.96752 * 180.02562 * 19 18 16 21 21 C 1.39436 * 120.02758 * 359.97438 * 20 19 18 22 22 C 1.48408 * 119.97481 * 179.97438 * 21 20 19 23 23 N 1.35225 * 126.41919 * 179.97438 * 22 21 20 24 24 C 1.30965 * 105.58413 * 179.97438 * 23 22 21 25 25 O 1.33677 * 107.12449 * 359.97438 * 24 23 22 26 26 N 1.21297 * 110.02635 * 0.02562 * 25 24 23 27 27 C 1.39439 * 120.05601 * 0.25851 * 21 20 19 28 28 C 1.37732 * 120.01922 * 359.48078 * 27 21 20 29 29 C 1.47422 * 108.70686 * 358.58679 * 15 14 13 30 30 H 1.09007 * 109.46577 * 274.73214 * 1 2 3 31 31 H 1.08995 * 109.47350 * 34.73104 * 1 2 3 32 32 H 1.09002 * 109.47221 * 154.73946 * 1 2 3 33 33 H 0.97001 * 120.00501 * 179.97438 * 6 5 3 34 34 H 1.08998 * 110.72037 * 271.95880 * 13 11 2 35 35 H 1.08999 * 110.71705 * 35.22930 * 13 11 2 36 36 H 1.09002 * 109.98790 * 218.66659 * 14 13 11 37 37 H 1.09000 * 109.77761 * 97.49784 * 14 13 11 38 38 H 1.07990 * 120.01389 * 0.02562 * 19 18 16 39 39 H 1.07997 * 119.98728 * 180.02562 * 20 19 18 40 40 H 1.07994 * 126.44139 * 179.97438 * 24 23 22 41 41 H 1.07992 * 119.98929 * 179.72310 * 27 21 20 42 42 H 1.07999 * 120.01393 * 180.23197 * 28 27 21 43 43 H 1.08999 * 110.36972 * 143.18823 * 29 15 14 44 44 H 1.08995 * 110.37080 * 265.41046 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 2.9493 1.3478 0.7078 5 6 1.8161 2.1800 -0.9096 6 7 2.5130 3.2957 -0.9501 7 14 0.3780 1.9341 -2.0763 8 1 -0.8451 2.5366 -1.4882 9 1 0.6770 2.5887 -3.3752 10 1 0.1593 0.4813 -2.2929 11 6 2.1974 -1.2687 -0.0006 12 1 3.2729 -1.0966 0.0426 13 6 1.7330 -2.1805 1.1658 14 6 2.0341 -3.5996 0.6389 15 7 2.0999 -3.5158 -0.8274 16 6 2.3650 -4.5406 -1.6615 17 8 2.4925 -4.3370 -2.8531 18 6 2.5010 -5.9122 -1.1274 19 6 2.6372 -6.9924 -2.0021 20 6 2.7632 -8.2700 -1.5033 21 6 2.7554 -8.4850 -0.1256 22 6 2.8907 -9.8622 0.4106 23 7 2.9001 -10.2185 1.7151 24 6 3.0385 -11.5208 1.7231 25 8 3.1079 -11.9171 0.4484 26 7 3.0222 -10.9585 -0.2899 27 6 2.6146 -7.4079 0.7486 28 6 2.4938 -6.1288 0.2522 29 6 1.8214 -2.1265 -1.2345 30 1 -0.3633 0.0848 1.0243 31 1 -0.3634 0.8445 -0.5854 32 1 -0.3634 -0.9294 -0.4385 33 1 2.2801 3.9903 -1.5859 34 1 2.3058 -1.9725 2.0695 35 1 0.6652 -2.0593 1.3483 36 1 1.2392 -4.2837 0.9359 37 1 2.9897 -3.9445 1.0338 38 1 2.6436 -6.8260 -3.0691 39 1 2.8689 -9.1055 -2.1794 40 1 3.0873 -12.1553 2.5956 41 1 2.6042 -7.5761 1.8152 42 1 2.3885 -5.2942 0.9294 43 1 2.4381 -1.8511 -2.0901 44 1 0.7651 -2.0060 -1.4747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972750598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:22 Heat of formation + Delta-G solvation = 132.093364 kcal Electronic energy + Delta-G solvation = -28709.109641 eV Core-core repulsion = 24632.499383 eV Total energy + Delta-G solvation = -4076.610257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.05507 -40.63165 -38.91279 -37.57088 -36.23547 -35.17782 -33.37489 -32.07496 -31.39488 -31.20967 -30.27136 -28.35585 -26.35195 -25.78490 -24.81771 -23.89202 -23.03683 -22.42522 -21.75572 -20.00454 -19.51113 -18.76136 -18.55430 -17.43951 -17.16345 -16.63365 -16.18475 -15.99329 -15.75168 -15.29384 -14.70073 -14.47606 -14.24557 -13.93549 -13.73523 -13.53319 -13.40580 -13.16078 -12.90948 -12.83058 -12.51962 -12.40854 -12.34377 -12.13681 -11.96330 -11.79345 -11.60580 -11.20198 -10.95894 -10.90420 -10.71357 -10.62522 -10.23370 -9.93919 -9.87974 -9.43499 -9.35572 -9.06908 -8.64350 -8.49722 -6.78152 -6.03518 -3.71276 0.05796 0.84264 1.03208 1.85946 2.49993 2.84084 2.97823 3.06934 3.27160 3.41411 3.43915 3.55505 3.62316 4.31701 4.42721 4.49198 4.55259 4.60581 4.70110 4.96269 5.00715 5.03864 5.13799 5.14688 5.17633 5.27557 5.34212 5.44083 5.54750 5.65734 5.68901 5.81375 5.93009 5.99287 6.02816 6.04750 6.14544 6.23367 6.31662 6.35611 6.47010 6.53471 6.59096 6.74392 7.58359 7.63517 8.05412 8.17436 8.35407 8.85331 9.57741 10.00985 11.07185 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.029728 B = 0.002118 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.662231 B =13215.859388 C =13747.401330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.597 5.597 3 C -0.282 4.282 4 H 0.079 0.921 5 C 0.041 3.959 6 N -0.902 5.902 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.304 1.304 10 H -0.267 1.267 11 C 0.175 3.825 12 H 0.090 0.910 13 C -0.154 4.154 14 C 0.090 3.910 15 N -0.605 5.605 16 C 0.565 3.435 17 O -0.537 6.537 18 C -0.103 4.103 19 C -0.064 4.064 20 C -0.092 4.092 21 C -0.011 4.011 22 C 0.212 3.788 23 N -0.478 5.478 24 C 0.164 3.836 25 O 0.082 5.918 26 N -0.372 5.372 27 C -0.082 4.082 28 C -0.128 4.128 29 C 0.081 3.919 30 H 0.019 0.981 31 H 0.030 0.970 32 H 0.036 0.964 33 H 0.265 0.735 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.144 0.856 39 H 0.136 0.864 40 H 0.266 0.734 41 H 0.141 0.859 42 H 0.173 0.827 43 H 0.079 0.921 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.650 -29.474 7.557 30.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.320 5.320 3 C -0.411 4.411 4 H 0.097 0.903 5 C -0.162 4.162 6 N -0.541 5.541 7 Si 0.738 3.262 8 H -0.215 1.215 9 H -0.233 1.233 10 H -0.192 1.192 11 C 0.066 3.934 12 H 0.109 0.891 13 C -0.194 4.194 14 C -0.033 4.033 15 N -0.338 5.338 16 C 0.354 3.646 17 O -0.415 6.415 18 C -0.106 4.106 19 C -0.083 4.083 20 C -0.112 4.112 21 C -0.013 4.013 22 C -0.057 4.057 23 N -0.210 5.210 24 C -0.077 4.077 25 O 0.021 5.979 26 N -0.077 5.077 27 C -0.102 4.102 28 C -0.146 4.146 29 C -0.043 4.043 30 H 0.037 0.963 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.162 0.838 39 H 0.154 0.846 40 H 0.281 0.719 41 H 0.158 0.842 42 H 0.189 0.811 43 H 0.098 0.902 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.580 -28.811 6.102 29.456 hybrid contribution -0.862 -0.349 -0.330 0.987 sum -1.442 -29.160 5.773 29.761 Atomic orbital electron populations 1.21381 0.85530 0.98122 0.98021 1.43839 1.00144 1.01453 1.86520 1.18722 1.17356 0.90540 1.14489 0.90320 1.25709 0.97766 0.96691 0.95997 1.69773 1.39498 1.07312 1.37568 0.86540 0.81907 0.78000 0.79740 1.21455 1.23289 1.19238 1.21653 0.97220 0.85026 0.89515 0.89141 1.23255 1.02804 0.92767 1.00543 1.22558 1.00837 0.99277 0.80623 1.48367 1.68618 1.09851 1.06996 1.17907 0.77409 0.83691 0.85582 1.90786 1.50989 1.84513 1.15214 1.20184 1.02656 0.93694 0.94108 1.21204 0.95706 0.90558 1.00849 1.21094 0.98987 0.97573 0.93555 1.17555 1.03719 0.86617 0.93444 1.24031 1.01157 0.95244 0.85271 1.71986 1.19203 1.10870 1.18932 1.30496 0.95689 0.91539 0.89960 1.85316 1.64583 1.31622 1.16421 1.74942 1.20095 0.95314 1.17394 1.21173 0.97723 0.91046 1.00212 1.22870 0.97281 0.98850 0.95576 1.23190 1.01269 0.78645 1.01199 0.96296 0.95231 0.94501 0.92489 0.89889 0.90492 0.90753 0.90424 0.83843 0.84645 0.71861 0.84162 0.81096 0.90231 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.31 7.70 59.85 0.46 2.77 16 2 N -0.60 -13.33 2.51 -171.03 -0.43 -13.76 16 3 C -0.28 -7.60 9.93 -15.06 -0.15 -7.75 16 4 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 5 C 0.04 1.14 5.50 -17.43 -0.10 1.05 16 6 N -0.90 -27.07 13.97 55.49 0.78 -26.30 16 7 Si 0.91 22.35 24.76 -169.99 -4.21 18.14 16 8 H -0.29 -6.92 7.10 56.52 0.40 -6.52 16 9 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 10 H -0.27 -6.30 6.18 56.52 0.35 -5.95 16 11 C 0.18 3.21 3.54 -65.78 -0.23 2.98 16 12 H 0.09 1.74 7.96 -51.93 -0.41 1.33 16 13 C -0.15 -2.10 6.51 -24.89 -0.16 -2.26 16 14 C 0.09 1.03 4.86 -3.06 -0.01 1.02 16 15 N -0.61 -9.24 3.33 -176.85 -0.59 -9.83 16 16 C 0.57 9.08 7.81 -12.34 -0.10 8.98 16 17 O -0.54 -10.54 16.58 5.32 0.09 -10.45 16 18 C -0.10 -1.31 5.88 -104.92 -0.62 -1.93 16 19 C -0.06 -0.76 9.58 -39.24 -0.38 -1.14 16 20 C -0.09 -0.98 9.67 -39.32 -0.38 -1.36 16 21 C -0.01 -0.12 5.88 -104.82 -0.62 -0.74 16 22 C 0.21 2.16 7.80 -156.11 -1.22 0.94 16 23 N -0.48 -4.00 11.24 -13.73 -0.15 -4.16 16 24 C 0.16 0.71 13.39 52.05 0.70 1.41 16 25 O 0.08 0.56 11.29 18.02 0.20 0.77 16 26 N -0.37 -3.68 11.84 30.96 0.37 -3.32 16 27 C -0.08 -0.79 9.68 -39.32 -0.38 -1.17 16 28 C -0.13 -1.32 8.60 -39.24 -0.34 -1.66 16 29 C 0.08 1.46 6.49 -2.53 -0.02 1.45 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.03 0.66 2.75 -51.93 -0.14 0.52 16 32 H 0.04 0.66 6.34 -51.93 -0.33 0.34 16 33 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.05 7.09 -51.93 -0.37 0.68 16 36 H 0.07 0.70 6.73 -51.93 -0.35 0.35 16 37 H 0.08 0.74 6.74 -51.93 -0.35 0.39 16 38 H 0.14 1.68 7.65 -52.49 -0.40 1.28 16 39 H 0.14 1.28 7.86 -52.49 -0.41 0.86 16 40 H 0.27 -0.49 8.06 -52.49 -0.42 -0.91 16 41 H 0.14 1.15 7.86 -52.49 -0.41 0.74 16 42 H 0.17 1.49 2.71 -59.23 -0.16 1.33 16 43 H 0.08 1.61 7.98 -51.93 -0.41 1.19 16 44 H 0.07 1.27 6.33 -51.93 -0.33 0.94 16 LS Contribution 357.47 15.07 5.39 5.39 Total: -1.00 -34.95 357.47 -7.06 -42.01 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -4.96 Total: -1.11 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -3.53 Total: 2.61 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.03 Total: -57.36 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.29 Total: -9.68 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.21 Total: 18.14 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.95 -7.06 -42.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972750598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.105 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds