Wall clock time and date at job start Wed Apr 1 2020 00:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36935 * 120.00261 * 2 1 4 4 H 1.07996 * 120.00676 * 204.90204 * 3 2 1 5 5 C 1.38813 * 119.99603 * 24.90138 * 3 2 1 6 6 N 1.31623 * 120.00242 * 5.54421 * 5 3 2 7 7 Si 1.86801 * 120.00039 * 185.54685 * 5 3 2 8 8 H 1.48501 * 109.47174 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.47189 * 119.99859 * 7 5 3 10 10 H 1.48494 * 109.47336 * 240.00222 * 7 5 3 11 11 C 1.46505 * 119.99900 * 179.97438 * 2 1 3 12 12 H 1.09007 * 110.88261 * 183.87847 * 11 2 1 13 13 C 1.55155 * 111.00293 * 60.00147 * 11 2 1 14 14 C 1.54329 * 102.94084 * 206.38287 * 13 11 2 15 15 N 1.47015 * 107.26945 * 22.19492 * 14 13 11 16 16 C 1.34778 * 125.64923 * 181.02441 * 15 14 13 17 17 O 1.21558 * 120.00411 * 185.22074 * 16 15 14 18 18 C 1.47821 * 119.99922 * 5.21817 * 16 15 14 19 19 C 1.39649 * 120.02496 * 171.83558 * 18 16 15 20 20 C 1.37729 * 119.97348 * 180.02562 * 19 18 16 21 21 C 1.39438 * 120.02576 * 0.02608 * 20 19 18 22 22 C 1.48402 * 119.97737 * 179.97438 * 21 20 19 23 23 N 1.35223 * 126.41826 * 179.97438 * 22 21 20 24 24 C 1.30965 * 105.58341 * 179.97438 * 23 22 21 25 25 O 1.33676 * 107.12334 * 0.02562 * 24 23 22 26 26 N 1.21291 * 110.02575 * 359.74539 * 25 24 23 27 27 C 1.39441 * 120.05282 * 0.22693 * 21 20 19 28 28 C 1.37736 * 120.02026 * 359.49527 * 27 21 20 29 29 C 1.47428 * 108.70585 * 1.28254 * 15 14 13 30 30 H 1.09001 * 109.47139 * 275.04500 * 1 2 3 31 31 H 1.08995 * 109.46927 * 35.04893 * 1 2 3 32 32 H 1.09001 * 109.47126 * 155.04606 * 1 2 3 33 33 H 0.96998 * 120.00027 * 179.97438 * 6 5 3 34 34 H 1.09004 * 110.71861 * 88.02140 * 13 11 2 35 35 H 1.08993 * 110.87546 * 324.81943 * 13 11 2 36 36 H 1.09000 * 109.87904 * 262.77896 * 14 13 11 37 37 H 1.08997 * 109.87857 * 141.61354 * 14 13 11 38 38 H 1.08000 * 120.01673 * 0.02562 * 19 18 16 39 39 H 1.07996 * 119.98958 * 180.02562 * 20 19 18 40 40 H 1.08001 * 126.44328 * 180.02562 * 24 23 22 41 41 H 1.07995 * 119.99200 * 179.72524 * 27 21 20 42 42 H 1.08001 * 120.00923 * 180.23022 * 28 27 21 43 43 H 1.09000 * 110.36161 * 94.48102 * 29 15 14 44 44 H 1.08998 * 110.37240 * 216.80262 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1544 1.2294 -0.3938 5 6 1.5524 2.3321 0.5062 6 7 0.3725 2.2588 1.0849 7 14 2.4231 3.9788 0.3660 8 1 3.7260 3.7929 -0.3219 9 1 1.5808 4.9192 -0.4160 10 1 2.6545 4.5336 1.7238 11 6 2.1975 -1.2688 0.0006 12 1 3.2718 -1.0972 0.0694 13 6 1.8484 -2.1130 -1.2535 14 6 2.1074 -3.5588 -0.7798 15 7 2.0279 -3.5580 0.6882 16 6 2.2155 -4.6283 1.4856 17 8 2.0323 -4.5333 2.6835 18 6 2.6441 -5.9177 0.9034 19 6 3.0030 -6.9770 1.7395 20 6 3.4026 -8.1777 1.1959 21 6 3.4494 -8.3357 -0.1887 22 6 3.8807 -9.6297 -0.7732 23 7 3.9732 -9.9249 -2.0896 24 6 4.3898 -11.1653 -2.1436 25 8 4.5369 -11.5863 -0.8834 26 7 4.2468 -10.6966 -0.1118 27 6 3.0963 -7.2769 -1.0246 28 6 2.6909 -6.0771 -0.4832 29 6 1.7030 -2.1939 1.1433 30 1 -0.3633 0.0904 1.0237 31 1 -0.3633 0.8413 -0.5901 32 1 -0.3633 -0.9317 -0.4336 33 1 -0.0447 3.0597 1.4389 34 1 2.5039 -1.8566 -2.0858 35 1 0.8032 -1.9800 -1.5326 36 1 3.0992 -3.8808 -1.0973 37 1 1.3495 -4.2251 -1.1918 38 1 2.9673 -6.8548 2.8120 39 1 3.6798 -8.9973 1.8423 40 1 4.5788 -11.7402 -3.0381 41 1 3.1371 -7.3989 -2.0969 42 1 2.4138 -5.2584 -1.1308 43 1 0.6273 -2.0868 1.2826 44 1 2.2307 -1.9672 2.0697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972750599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:25 Heat of formation + Delta-G solvation = 124.846078 kcal Electronic energy + Delta-G solvation = -28555.558291 eV Core-core repulsion = 24478.633767 eV Total energy + Delta-G solvation = -4076.924523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.02998 -40.55590 -38.82828 -37.43456 -36.20504 -34.98606 -33.34525 -31.99174 -31.33450 -30.94112 -29.87821 -27.97760 -26.11754 -25.71957 -24.78234 -23.74436 -22.97273 -22.35868 -21.71696 -19.91355 -19.37795 -18.72905 -18.52908 -17.34320 -17.11249 -16.56942 -15.99336 -15.89751 -15.73011 -14.87380 -14.55858 -14.43588 -14.10030 -13.82917 -13.54429 -13.37752 -13.37011 -13.10580 -12.89492 -12.56404 -12.39884 -12.22375 -12.15333 -12.01139 -11.77844 -11.52216 -11.01774 -10.93005 -10.91138 -10.72353 -10.49758 -10.46147 -10.30760 -9.92037 -9.88501 -9.79303 -9.31739 -9.02592 -8.63562 -8.40144 -6.82965 -5.79678 -3.30151 0.09838 0.87180 1.07306 1.89519 2.52496 2.89405 3.05578 3.11215 3.34201 3.41327 3.43076 3.58358 3.67181 4.37077 4.41577 4.55518 4.60659 4.64554 4.85846 5.02082 5.07294 5.14350 5.20889 5.22131 5.34285 5.35861 5.45213 5.58879 5.68467 5.71896 5.82593 5.93321 5.97847 6.03777 6.08282 6.25091 6.31178 6.42068 6.50640 6.58792 6.74836 6.82507 7.35040 7.66218 7.66743 7.70610 7.76245 8.24473 8.33201 9.16089 9.76578 10.25772 11.24348 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.028587 B = 0.001977 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.226215 B =14157.556328 C =14614.403402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.585 5.585 3 C -0.261 4.261 4 H 0.071 0.929 5 C 0.006 3.994 6 N -0.905 5.905 7 Si 0.908 3.092 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.157 4.157 14 C 0.091 3.909 15 N -0.604 5.604 16 C 0.564 3.436 17 O -0.538 6.538 18 C -0.101 4.101 19 C -0.065 4.065 20 C -0.092 4.092 21 C -0.012 4.012 22 C 0.213 3.787 23 N -0.478 5.478 24 C 0.164 3.836 25 O 0.082 5.918 26 N -0.372 5.372 27 C -0.082 4.082 28 C -0.128 4.128 29 C 0.087 3.913 30 H 0.032 0.968 31 H 0.047 0.953 32 H -0.001 1.001 33 H 0.254 0.746 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.144 0.856 39 H 0.135 0.865 40 H 0.266 0.734 41 H 0.140 0.860 42 H 0.172 0.828 43 H 0.071 0.929 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.491 -26.044 -8.862 28.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.306 5.306 3 C -0.390 4.390 4 H 0.089 0.911 5 C -0.193 4.193 6 N -0.550 5.550 7 Si 0.738 3.262 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.062 3.938 12 H 0.098 0.902 13 C -0.197 4.197 14 C -0.032 4.032 15 N -0.337 5.337 16 C 0.353 3.647 17 O -0.417 6.417 18 C -0.105 4.105 19 C -0.084 4.084 20 C -0.112 4.112 21 C -0.014 4.014 22 C -0.057 4.057 23 N -0.210 5.210 24 C -0.077 4.077 25 O 0.020 5.980 26 N -0.078 5.078 27 C -0.102 4.102 28 C -0.145 4.145 29 C -0.037 4.037 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.017 0.983 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.162 0.838 39 H 0.153 0.847 40 H 0.281 0.719 41 H 0.158 0.842 42 H 0.188 0.812 43 H 0.090 0.910 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.172 -25.510 -7.397 27.268 hybrid contribution 0.425 0.538 -0.325 0.759 sum 6.597 -24.972 -7.722 26.959 Atomic orbital electron populations 1.20849 0.82280 0.95541 0.99676 1.43847 1.01967 0.99785 1.84978 1.19258 0.99499 0.85661 1.34579 0.91144 1.25166 0.97291 0.98921 0.97938 1.70063 1.15886 1.27721 1.41307 0.86128 0.78948 0.83767 0.77348 1.20240 1.21593 1.21575 1.21510 0.96453 0.85753 0.90039 0.90240 1.23315 1.03134 0.92487 1.00800 1.22540 1.00699 0.99283 0.80689 1.48398 1.68343 1.09798 1.07193 1.17898 0.78177 0.82789 0.85862 1.90783 1.52180 1.84129 1.14574 1.20201 1.01696 0.94593 0.94046 1.21201 0.95313 0.90895 1.00958 1.21090 0.98906 0.97988 0.93220 1.17549 1.02318 0.88392 0.93184 1.24033 1.00490 0.95541 0.85589 1.71986 1.18525 1.12724 1.17751 1.30493 0.95298 0.91146 0.90796 1.85314 1.61762 1.35216 1.15672 1.74938 1.17929 0.98436 1.16460 1.21171 0.97144 0.91481 1.00357 1.22851 0.97475 0.99048 0.95164 1.23199 1.01269 0.78802 1.00391 0.94971 0.93435 0.98268 0.93600 0.90328 0.90291 0.90657 0.90936 0.83847 0.84671 0.71879 0.84196 0.81161 0.91044 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.78 7.53 59.85 0.45 4.23 16 2 N -0.59 -13.87 2.96 -170.90 -0.51 -14.38 16 3 C -0.26 -6.85 9.62 -15.06 -0.14 -7.00 16 4 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 5 C 0.01 0.15 5.24 -17.43 -0.09 0.06 16 6 N -0.91 -25.75 10.45 55.49 0.58 -25.17 16 7 Si 0.91 21.33 29.56 -169.99 -5.02 16.31 16 8 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 9 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 C 0.17 3.31 3.55 -65.66 -0.23 3.07 16 12 H 0.08 1.53 7.96 -51.93 -0.41 1.12 16 13 C -0.16 -2.31 6.49 -24.90 -0.16 -2.48 16 14 C 0.09 1.12 4.87 -3.07 -0.01 1.10 16 15 N -0.60 -9.60 3.32 -175.57 -0.58 -10.19 16 16 C 0.56 9.33 7.80 -12.34 -0.10 9.23 16 17 O -0.54 -10.79 16.66 5.31 0.09 -10.70 16 18 C -0.10 -1.34 5.87 -104.92 -0.62 -1.96 16 19 C -0.06 -0.79 9.58 -39.24 -0.38 -1.16 16 20 C -0.09 -1.00 9.67 -39.32 -0.38 -1.38 16 21 C -0.01 -0.13 5.88 -104.82 -0.62 -0.75 16 22 C 0.21 2.22 7.79 -156.12 -1.22 1.00 16 23 N -0.48 -4.11 11.24 -13.73 -0.15 -4.26 16 24 C 0.16 0.74 13.39 52.05 0.70 1.44 16 25 O 0.08 0.58 11.29 18.02 0.20 0.78 16 26 N -0.37 -3.76 11.84 30.95 0.37 -3.39 16 27 C -0.08 -0.82 9.68 -39.32 -0.38 -1.20 16 28 C -0.13 -1.38 8.58 -39.24 -0.34 -1.71 16 29 C 0.09 1.65 6.44 -2.41 -0.02 1.63 16 30 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 31 H 0.05 1.21 7.26 -51.93 -0.38 0.83 16 32 H 0.00 -0.02 6.38 -51.93 -0.33 -0.35 16 33 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.22 6.47 -51.93 -0.34 0.88 16 36 H 0.08 0.78 6.68 -51.93 -0.35 0.43 16 37 H 0.07 0.75 6.78 -51.93 -0.35 0.40 16 38 H 0.14 1.72 7.66 -52.49 -0.40 1.32 16 39 H 0.14 1.31 7.86 -52.49 -0.41 0.89 16 40 H 0.27 -0.44 8.06 -52.49 -0.42 -0.86 16 41 H 0.14 1.20 7.86 -52.49 -0.41 0.79 16 42 H 0.17 1.58 2.76 -57.75 -0.16 1.42 16 43 H 0.07 1.44 6.97 -51.93 -0.36 1.08 16 44 H 0.07 1.55 8.09 -51.93 -0.42 1.13 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -33.84 363.05 -8.19 -42.03 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -5.10 Total: -0.63 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -3.53 Total: 4.12 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -0.30 Total: -57.38 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.29 Total: -9.92 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.84 -8.19 -42.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972750599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.873 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds