Wall clock time and date at job start Wed Apr 1 2020 00:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36941 * 120.00024 * 2 1 4 4 H 1.08002 * 119.99895 * 203.25052 * 3 2 1 5 5 C 1.38809 * 119.99904 * 23.25186 * 3 2 1 6 6 N 1.31626 * 120.00082 * 13.76130 * 5 3 2 7 7 Si 1.86803 * 120.00177 * 193.76708 * 5 3 2 8 8 H 1.48499 * 109.46670 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.47311 * 119.99679 * 7 5 3 10 10 H 1.48501 * 109.46863 * 239.99840 * 7 5 3 11 11 C 1.46502 * 119.99886 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.88352 * 183.87715 * 11 2 1 13 13 C 1.55152 * 111.00550 * 59.99655 * 11 2 1 14 14 C 1.54324 * 102.93891 * 206.42320 * 13 11 2 15 15 N 1.47024 * 107.27355 * 22.19589 * 14 13 11 16 16 C 1.34775 * 125.64631 * 181.02077 * 15 14 13 17 17 O 1.21585 * 119.99739 * 180.02562 * 16 15 14 18 18 C 1.47601 * 120.00167 * 0.02562 * 16 15 14 19 19 N 1.32563 * 120.90363 * 359.97438 * 18 16 15 20 20 N 1.28008 * 123.11397 * 180.02562 * 19 18 16 21 21 C 1.32287 * 124.11644 * 359.97438 * 20 19 18 22 22 O 1.35285 * 120.22286 * 180.02562 * 21 20 19 23 23 C 1.41101 * 119.54388 * 0.02562 * 21 20 19 24 24 C 1.39969 * 122.87499 * 179.97438 * 23 21 20 25 25 C 1.36381 * 119.35720 * 180.02562 * 24 23 21 26 26 C 1.39264 * 121.08455 * 359.97438 * 25 24 23 27 27 C 1.36490 * 121.01549 * 0.02562 * 26 25 24 28 28 C 1.39628 * 119.34411 * 359.97438 * 27 26 25 29 29 C 1.47425 * 108.70114 * 1.28459 * 15 14 13 30 30 H 1.09003 * 109.47155 * 275.15775 * 1 2 3 31 31 H 1.09001 * 109.47204 * 35.15700 * 1 2 3 32 32 H 1.09000 * 109.47388 * 155.15292 * 1 2 3 33 33 H 0.96994 * 119.99676 * 180.02562 * 6 5 3 34 34 H 1.08997 * 110.71904 * 88.06113 * 13 11 2 35 35 H 1.09000 * 110.87436 * 324.85994 * 13 11 2 36 36 H 1.09001 * 109.88197 * 262.77339 * 14 13 11 37 37 H 1.09007 * 110.01183 * 141.68642 * 14 13 11 38 38 H 0.96699 * 113.99572 * 90.00439 * 22 21 20 39 39 H 1.07993 * 120.32059 * 0.02562 * 24 23 21 40 40 H 1.08003 * 119.46139 * 180.02562 * 25 24 23 41 41 H 1.08006 * 119.49381 * 180.27955 * 26 25 24 42 42 H 1.08007 * 120.32412 * 180.02562 * 27 26 25 43 43 H 1.08998 * 110.36368 * 94.48091 * 29 15 14 44 44 H 1.08994 * 110.36587 * 216.80743 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1639 1.2239 -0.3692 5 6 1.5402 2.3392 0.4746 6 7 0.4240 2.2564 1.1673 7 14 2.3039 4.0088 0.1301 8 1 3.5470 3.8304 -0.6625 9 1 1.3438 4.8439 -0.6354 10 1 2.6284 4.6793 1.4148 11 6 2.1975 -1.2688 -0.0006 12 1 3.2717 -1.0973 0.0684 13 6 1.8483 -2.1120 -1.2553 14 6 2.1063 -3.5582 -0.7825 15 7 2.0264 -3.5583 0.6856 16 6 2.2131 -4.6293 1.4822 17 8 2.1218 -4.5125 2.6890 18 6 2.5284 -5.9439 0.8897 19 7 2.6316 -6.0916 -0.4236 20 7 2.9025 -7.2110 -0.9822 21 6 3.1094 -8.3388 -0.3223 22 8 3.3913 -9.4788 -0.9939 23 6 3.0338 -8.3443 1.0866 24 6 3.2396 -9.4967 1.8540 25 6 3.1487 -9.4203 3.2127 26 6 2.8554 -8.2157 3.8471 27 6 2.6493 -7.0741 3.1280 28 6 2.7351 -7.1179 1.7350 29 6 1.7020 -2.1944 1.1415 30 1 -0.3633 0.0924 1.0235 31 1 -0.3634 0.8402 -0.5917 32 1 -0.3634 -0.9325 -0.4318 33 1 -0.0020 3.0624 1.4985 34 1 2.5042 -1.8554 -2.0871 35 1 0.8032 -1.9782 -1.5346 36 1 3.0980 -3.8805 -1.0998 37 1 1.3500 -4.2260 -1.1950 38 1 4.3357 -9.6246 -1.1420 39 1 3.4681 -10.4371 1.3749 40 1 3.3075 -10.3083 3.8064 41 1 2.7940 -8.1836 4.9249 42 1 2.4229 -6.1458 3.6316 43 1 0.6263 -2.0868 1.2805 44 1 2.2296 -1.9686 2.0681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972778348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:54 Heat of formation + Delta-G solvation = 50.641486 kcal Electronic energy + Delta-G solvation = -29355.332722 eV Core-core repulsion = 25275.190446 eV Total energy + Delta-G solvation = -4080.142276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72625 -39.74803 -38.53639 -37.97947 -37.41824 -34.85076 -32.72094 -31.97157 -31.78785 -30.65379 -29.69465 -27.90830 -26.09974 -25.83805 -24.61137 -23.80025 -22.73183 -22.29810 -20.29874 -19.48284 -19.32262 -18.88815 -17.98551 -17.05988 -16.91478 -16.38682 -15.94974 -15.70947 -15.16437 -15.07933 -14.79890 -14.41158 -14.20091 -13.85111 -13.33135 -13.28630 -12.99082 -12.92112 -12.71787 -12.56394 -12.45953 -12.36383 -12.03528 -11.91359 -11.85962 -11.27303 -10.91816 -10.77877 -10.59995 -10.50252 -10.45977 -10.23245 -9.89318 -9.85622 -9.79794 -9.75167 -9.67138 -8.83477 -8.60497 -8.37320 -6.80695 -5.76973 -3.24730 -0.44632 0.22437 1.17783 2.22281 2.80885 2.92639 2.95831 3.36627 3.44133 3.46112 3.57029 3.69341 4.00149 4.14351 4.32743 4.46051 4.47707 4.65771 4.80444 4.95556 5.09270 5.20251 5.23053 5.31088 5.45841 5.53070 5.61007 5.68570 5.71916 5.86644 5.92308 5.98282 5.99123 6.15762 6.31231 6.34709 6.43121 6.52618 6.61595 6.77382 6.84384 6.89314 7.32822 7.62227 7.69751 7.78161 8.06294 8.34636 8.40353 9.17867 9.80223 10.29135 11.27224 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.022986 B = 0.002455 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.837607 B =11404.041545 C =12193.419235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.584 5.584 3 C -0.260 4.260 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.080 0.920 13 C -0.156 4.156 14 C 0.112 3.888 15 N -0.583 5.583 16 C 0.584 3.416 17 O -0.535 6.535 18 C 0.068 3.932 19 N -0.195 5.195 20 N -0.289 5.289 21 C 0.319 3.681 22 O -0.468 6.468 23 C -0.105 4.105 24 C -0.088 4.088 25 C -0.100 4.100 26 C -0.096 4.096 27 C -0.088 4.088 28 C -0.033 4.033 29 C 0.085 3.915 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.003 0.997 33 H 0.253 0.747 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.409 0.591 39 H 0.142 0.858 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.175 0.825 43 H 0.074 0.926 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.437 -25.419 0.902 26.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.304 5.304 3 C -0.389 4.389 4 H 0.089 0.911 5 C -0.194 4.194 6 N -0.547 5.547 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.062 3.938 12 H 0.098 0.902 13 C -0.196 4.196 14 C -0.011 4.011 15 N -0.314 5.314 16 C 0.370 3.630 17 O -0.413 6.413 18 C -0.092 4.092 19 N -0.032 5.032 20 N -0.131 5.131 21 C 0.122 3.878 22 O -0.275 6.275 23 C -0.113 4.113 24 C -0.108 4.108 25 C -0.120 4.120 26 C -0.115 4.115 27 C -0.107 4.107 28 C -0.041 4.041 29 C -0.038 4.038 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.022 0.978 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.269 0.731 39 H 0.160 0.840 40 H 0.152 0.848 41 H 0.155 0.845 42 H 0.192 0.808 43 H 0.093 0.907 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.621 -24.603 0.046 25.237 hybrid contribution 0.817 0.021 1.109 1.378 sum 6.438 -24.582 1.155 25.438 Atomic orbital electron populations 1.20827 0.82439 0.95735 0.99700 1.43872 1.01896 0.99850 1.84775 1.19255 0.98784 0.85151 1.35738 0.91137 1.25067 0.97946 0.98688 0.97728 1.70082 1.19947 1.27327 1.37342 0.86163 0.78560 0.84124 0.77543 1.20235 1.21566 1.21703 1.21528 0.96440 0.85626 0.90169 0.90203 1.23296 1.02896 0.92946 1.00495 1.22218 1.02300 0.98174 0.78448 1.48430 1.65334 1.09123 1.08535 1.16849 0.78886 0.81659 0.85640 1.90660 1.53643 1.83787 1.13196 1.24279 0.98413 0.94875 0.91658 1.73167 1.07374 1.13761 1.08946 1.72434 1.13295 0.94626 1.32758 1.21075 0.92793 0.87017 0.86905 1.84627 1.31274 1.34668 1.76880 1.18987 1.03772 0.95023 0.93534 1.20869 0.98947 0.97013 0.93932 1.21171 0.97673 0.98518 0.94607 1.21325 0.96855 0.92191 1.01175 1.21909 0.95549 1.01331 0.91881 1.19503 0.98352 0.90970 0.95264 1.23309 1.01399 0.78460 1.00656 0.94828 0.93885 0.97823 0.93664 0.90420 0.90563 0.90745 0.91041 0.73060 0.84030 0.84790 0.84540 0.80829 0.90731 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.74 7.56 59.85 0.45 4.19 16 2 N -0.58 -14.07 2.96 -170.90 -0.51 -14.58 16 3 C -0.26 -6.92 9.60 -15.06 -0.14 -7.07 16 4 H 0.07 1.84 7.87 -52.49 -0.41 1.42 16 5 C 0.00 0.13 5.08 -17.43 -0.09 0.04 16 6 N -0.90 -25.83 10.77 55.49 0.60 -25.24 16 7 Si 0.91 21.48 29.58 -169.99 -5.03 16.45 16 8 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 C 0.17 3.43 3.55 -65.66 -0.23 3.19 16 12 H 0.08 1.59 7.96 -51.93 -0.41 1.18 16 13 C -0.16 -2.57 6.49 -24.90 -0.16 -2.73 16 14 C 0.11 1.69 5.42 -3.06 -0.02 1.68 16 15 N -0.58 -9.86 3.32 -171.58 -0.57 -10.44 16 16 C 0.58 9.79 7.83 -12.44 -0.10 9.70 16 17 O -0.54 -9.72 14.00 5.29 0.07 -9.65 16 18 C 0.07 1.00 7.01 -80.56 -0.56 0.44 16 19 N -0.19 -2.88 8.09 34.49 0.28 -2.60 16 20 N -0.29 -3.97 11.40 30.80 0.35 -3.62 16 21 C 0.32 3.51 7.90 -16.27 -0.13 3.38 16 22 O -0.47 -3.63 12.94 -17.55 -0.23 -3.85 16 23 C -0.11 -1.12 5.76 -106.76 -0.61 -1.74 16 24 C -0.09 -0.66 9.63 -39.60 -0.38 -1.04 16 25 C -0.10 -0.66 9.95 -39.87 -0.40 -1.06 16 26 C -0.10 -0.78 9.96 -39.83 -0.40 -1.17 16 27 C -0.09 -1.00 9.33 -39.69 -0.37 -1.37 16 28 C -0.03 -0.43 5.90 -104.81 -0.62 -1.05 16 29 C 0.09 1.62 6.46 -2.41 -0.02 1.61 16 30 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 31 H 0.04 1.10 7.38 -51.93 -0.38 0.72 16 32 H 0.00 0.07 6.37 -51.93 -0.33 -0.26 16 33 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.30 6.47 -51.93 -0.34 0.96 16 36 H 0.07 1.08 7.45 -51.93 -0.39 0.69 16 37 H 0.07 1.06 7.56 -51.92 -0.39 0.67 16 38 H 0.41 0.95 9.06 45.56 0.41 1.36 16 39 H 0.14 0.69 7.75 -52.49 -0.41 0.28 16 40 H 0.13 0.48 8.06 -52.48 -0.42 0.05 16 41 H 0.14 0.76 8.06 -52.48 -0.42 0.33 16 42 H 0.17 2.24 5.28 -52.48 -0.28 1.96 16 43 H 0.07 1.50 6.96 -51.93 -0.36 1.14 16 44 H 0.08 1.57 8.03 -51.93 -0.42 1.16 16 LS Contribution 359.84 15.07 5.42 5.42 Total: -1.00 -32.65 359.84 -7.87 -40.53 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -4.49 Total: 0.57 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -3.78 Total: 7.00 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.15 Total: -56.47 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.15 Total: -13.50 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.65 -7.87 -40.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972778348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.167 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds