Wall clock time and date at job start Wed Apr 1 2020 00:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 120.00066 * 2 1 4 4 H 1.08001 * 119.99671 * 161.07331 * 3 2 1 5 5 C 1.38803 * 119.99889 * 340.79934 * 3 2 1 6 6 N 1.31617 * 120.00425 * 346.78606 * 5 3 2 7 7 Si 1.86801 * 119.99964 * 166.78942 * 5 3 2 8 8 H 1.48503 * 109.47489 * 89.99706 * 7 5 3 9 9 H 1.48500 * 109.47549 * 210.00005 * 7 5 3 10 10 H 1.48501 * 109.47128 * 329.99706 * 7 5 3 11 11 C 1.46507 * 120.00088 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.64058 * 181.68922 * 11 2 1 13 13 C 1.55152 * 110.71634 * 305.02818 * 11 2 1 14 14 C 1.54913 * 101.58124 * 153.86429 * 13 11 2 15 15 N 1.47422 * 104.83249 * 322.98961 * 14 13 11 16 16 C 1.34779 * 125.64838 * 204.09566 * 15 14 13 17 17 O 1.21581 * 119.99635 * 180.02562 * 16 15 14 18 18 C 1.47602 * 120.00031 * 0.03385 * 16 15 14 19 19 N 1.32560 * 120.89889 * 0.02562 * 18 16 15 20 20 N 1.28019 * 123.11050 * 179.97438 * 19 18 16 21 21 C 1.32282 * 124.11689 * 359.97438 * 20 19 18 22 22 O 1.35278 * 120.22566 * 179.97438 * 21 20 19 23 23 C 1.41108 * 119.54657 * 0.02562 * 21 20 19 24 24 C 1.39956 * 122.88291 * 180.02562 * 23 21 20 25 25 C 1.36394 * 119.35890 * 179.18981 * 24 23 21 26 26 C 1.39267 * 121.07965 * 0.79895 * 25 24 23 27 27 C 1.36481 * 121.01734 * 359.46338 * 26 25 24 28 28 C 1.39631 * 119.34356 * 0.02562 * 27 26 25 29 29 C 1.47019 * 108.70219 * 24.12607 * 15 14 13 30 30 H 1.09004 * 109.46481 * 84.81432 * 1 2 3 31 31 H 1.09000 * 109.47205 * 204.80959 * 1 2 3 32 32 H 1.08991 * 109.47212 * 324.81502 * 1 2 3 33 33 H 0.97001 * 120.00682 * 180.02562 * 6 5 3 34 34 H 1.09003 * 111.00547 * 271.93388 * 13 11 2 35 35 H 1.08995 * 111.01135 * 35.78567 * 13 11 2 36 36 H 1.09000 * 110.36967 * 204.14663 * 14 13 11 37 37 H 1.09008 * 110.46035 * 81.87011 * 14 13 11 38 38 H 0.96701 * 114.00608 * 89.99938 * 22 21 20 39 39 H 1.08002 * 120.32416 * 359.97438 * 24 23 21 40 40 H 1.08001 * 119.45831 * 180.26514 * 25 24 23 41 41 H 1.07998 * 119.49251 * 179.48502 * 26 25 24 42 42 H 1.08002 * 120.33070 * 179.97438 * 27 26 25 43 43 H 1.09010 * 109.88275 * 239.52486 * 29 15 14 44 44 H 1.09001 * 109.88607 * 118.36392 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1859 1.2111 0.3034 5 6 1.5136 2.3545 -0.3953 6 7 0.3519 2.2956 -1.0113 7 14 2.3062 4.0111 -0.0532 8 1 3.1740 4.3904 -1.1971 9 1 1.2489 5.0379 0.1278 10 1 3.1261 3.9219 1.1817 11 6 2.1976 -1.2688 -0.0006 12 1 3.2727 -1.0917 0.0296 13 6 1.7506 -2.1611 1.1874 14 6 2.0637 -3.5786 0.6466 15 7 1.7324 -3.5167 -0.7886 16 6 1.4056 -4.5685 -1.5654 17 8 1.1506 -4.3991 -2.7420 18 6 1.3571 -5.9259 -0.9876 19 7 1.6312 -6.1307 0.2931 20 7 1.6016 -7.2888 0.8380 21 6 1.2971 -8.4039 0.1948 22 8 1.2905 -9.5876 0.8496 23 6 0.9804 -8.3503 -1.1792 24 6 0.6479 -9.4855 -1.9272 25 6 0.3376 -9.3486 -3.2483 26 6 0.3626 -8.1012 -3.8672 27 6 0.6879 -6.9755 -3.1675 28 6 1.0006 -7.0795 -1.8107 29 6 1.8183 -2.1177 -1.2323 30 1 -0.3632 0.0929 -1.0235 31 1 -0.3633 -0.9328 0.4312 32 1 -0.3633 0.8398 0.5921 33 1 -0.0925 3.1122 -1.2879 34 1 2.3372 -1.9453 2.0804 35 1 0.6850 -2.0446 1.3843 36 1 1.4430 -4.3215 1.1476 37 1 3.1195 -3.8136 0.7824 38 1 0.4364 -9.8155 1.2417 39 1 0.6248 -10.4589 -1.4599 40 1 0.0766 -10.2230 -3.8260 41 1 0.1204 -8.0235 -4.9168 42 1 0.7042 -6.0137 -3.6587 43 1 0.8541 -1.7930 -1.6236 44 1 2.5848 -2.0189 -2.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972778349.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:57 Heat of formation + Delta-G solvation = 55.415653 kcal Electronic energy + Delta-G solvation = -29432.646553 eV Core-core repulsion = 25352.711301 eV Total energy + Delta-G solvation = -4079.935252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.72790 -39.73944 -38.53598 -37.97770 -37.42430 -34.84372 -32.71876 -31.97035 -31.78191 -30.64609 -29.65956 -27.91188 -26.09048 -25.84194 -24.61276 -23.76781 -22.71745 -22.32552 -20.34746 -19.49368 -19.21962 -18.89580 -17.99341 -17.09804 -16.87255 -16.33154 -16.01048 -15.72542 -15.09737 -15.05790 -14.82999 -14.54247 -14.13078 -13.84879 -13.36163 -13.33516 -12.98984 -12.86747 -12.74970 -12.61970 -12.52149 -12.18802 -11.99840 -11.86734 -11.76160 -11.24052 -10.90133 -10.77717 -10.58954 -10.53816 -10.41957 -10.25884 -9.89589 -9.81624 -9.77200 -9.75245 -9.62385 -8.83495 -8.56489 -8.35584 -6.85220 -5.75228 -3.19757 -0.44287 0.22335 1.18250 2.22667 2.81664 2.93600 2.96769 3.37776 3.44426 3.46194 3.57666 3.69626 4.00974 4.14455 4.33122 4.46773 4.48205 4.66083 4.80832 4.96126 5.11357 5.18973 5.22941 5.32034 5.43270 5.53649 5.61915 5.71394 5.72093 5.89937 5.92740 5.98416 5.99629 6.18137 6.33150 6.37067 6.42439 6.55317 6.63115 6.82885 6.84953 6.89022 7.39051 7.64466 7.70895 7.80119 8.08004 8.33923 8.40109 9.19357 9.82106 10.29386 11.29332 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.023644 B = 0.002487 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.957422 B =11256.872546 C =12097.622705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.587 5.587 3 C -0.258 4.258 4 H 0.072 0.928 5 C 0.002 3.998 6 N -0.907 5.907 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.280 1.280 11 C 0.172 3.828 12 H 0.080 0.920 13 C -0.155 4.155 14 C 0.098 3.902 15 N -0.582 5.582 16 C 0.583 3.417 17 O -0.535 6.535 18 C 0.070 3.930 19 N -0.196 5.196 20 N -0.290 5.290 21 C 0.319 3.681 22 O -0.468 6.468 23 C -0.105 4.105 24 C -0.088 4.088 25 C -0.100 4.100 26 C -0.096 4.096 27 C -0.087 4.087 28 C -0.034 4.034 29 C 0.084 3.916 30 H 0.029 0.971 31 H 0.001 0.999 32 H 0.048 0.952 33 H 0.253 0.747 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.409 0.591 39 H 0.142 0.858 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.175 0.825 43 H 0.078 0.922 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.431 -25.770 -0.749 25.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.307 5.307 3 C -0.388 4.388 4 H 0.090 0.910 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.205 1.205 11 C 0.062 3.938 12 H 0.098 0.902 13 C -0.195 4.195 14 C -0.025 4.025 15 N -0.312 5.312 16 C 0.368 3.632 17 O -0.412 6.412 18 C -0.090 4.090 19 N -0.034 5.034 20 N -0.132 5.132 21 C 0.122 3.878 22 O -0.275 6.275 23 C -0.112 4.112 24 C -0.108 4.108 25 C -0.119 4.119 26 C -0.116 4.116 27 C -0.106 4.106 28 C -0.041 4.041 29 C -0.040 4.040 30 H 0.047 0.953 31 H 0.020 0.980 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.270 0.730 39 H 0.160 0.840 40 H 0.152 0.848 41 H 0.155 0.845 42 H 0.192 0.808 43 H 0.096 0.904 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.684 -24.923 -0.074 24.932 hybrid contribution -0.494 0.070 -1.040 1.153 sum -1.178 -24.852 -1.114 24.905 Atomic orbital electron populations 1.20830 0.82238 0.95731 0.99553 1.43974 1.02026 0.99888 1.84795 1.19253 0.96364 0.84570 1.38570 0.91001 1.24988 0.97550 0.98467 0.98645 1.70097 1.16842 1.26754 1.41443 0.86223 0.78244 0.83752 0.78086 1.21437 1.21605 1.20503 1.21378 0.96498 0.85838 0.90111 0.90165 1.23404 1.02816 0.93315 0.99930 1.22729 1.01180 0.99070 0.79531 1.48452 1.63745 1.07536 1.11509 1.16878 0.79037 0.81920 0.85362 1.90659 1.51280 1.84072 1.15218 1.24308 0.97754 0.94969 0.91932 1.73167 1.09192 1.12197 1.08825 1.72428 1.14453 0.94135 1.32172 1.21058 0.91920 0.86958 0.87858 1.84622 1.38949 1.31134 1.72766 1.18986 1.03086 0.94635 0.94531 1.20870 0.98188 0.97417 0.94312 1.21178 0.97742 0.98203 0.94802 1.21322 0.97194 0.92094 1.00952 1.21911 0.94727 1.01912 0.92073 1.19502 0.98458 0.90730 0.95454 1.23109 1.02752 0.77852 1.00260 0.95259 0.98038 0.93293 0.93658 0.90185 0.90469 0.88542 0.91231 0.73047 0.84023 0.84782 0.84535 0.80823 0.90376 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.89 7.72 59.85 0.46 4.36 16 2 N -0.59 -14.22 2.94 -171.39 -0.50 -14.72 16 3 C -0.26 -6.89 9.66 -15.06 -0.15 -7.03 16 4 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 5 C 0.00 0.05 5.11 -17.43 -0.09 -0.04 16 6 N -0.91 -26.07 10.50 55.49 0.58 -25.48 16 7 Si 0.91 21.55 29.57 -169.99 -5.03 16.52 16 8 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 C 0.17 3.40 3.45 -66.09 -0.23 3.17 16 12 H 0.08 1.55 7.91 -51.93 -0.41 1.14 16 13 C -0.15 -2.55 6.59 -24.58 -0.16 -2.71 16 14 C 0.10 1.48 5.97 -2.53 -0.02 1.46 16 15 N -0.58 -9.92 3.33 -171.71 -0.57 -10.49 16 16 C 0.58 9.88 7.83 -12.44 -0.10 9.78 16 17 O -0.53 -9.87 14.07 5.29 0.07 -9.80 16 18 C 0.07 1.05 7.01 -80.57 -0.56 0.48 16 19 N -0.20 -2.89 7.82 34.49 0.27 -2.62 16 20 N -0.29 -3.98 11.40 30.80 0.35 -3.62 16 21 C 0.32 3.51 7.90 -16.27 -0.13 3.38 16 22 O -0.47 -3.63 12.94 -17.53 -0.23 -3.85 16 23 C -0.10 -1.12 5.76 -106.76 -0.61 -1.73 16 24 C -0.09 -0.66 9.63 -39.60 -0.38 -1.04 16 25 C -0.10 -0.67 9.95 -39.86 -0.40 -1.06 16 26 C -0.10 -0.79 9.96 -39.83 -0.40 -1.18 16 27 C -0.09 -1.00 9.33 -39.70 -0.37 -1.37 16 28 C -0.03 -0.44 5.90 -104.80 -0.62 -1.06 16 29 C 0.08 1.62 6.50 -3.07 -0.02 1.60 16 30 H 0.03 0.77 7.36 -51.93 -0.38 0.39 16 31 H 0.00 0.03 6.13 -51.93 -0.32 -0.29 16 32 H 0.05 1.28 7.08 -51.93 -0.37 0.91 16 33 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.08 1.35 6.14 -51.93 -0.32 1.03 16 36 H 0.10 1.43 5.93 -51.93 -0.31 1.12 16 37 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 38 H 0.41 0.96 9.06 45.56 0.41 1.38 16 39 H 0.14 0.69 7.75 -52.49 -0.41 0.28 16 40 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.17 2.27 5.28 -52.49 -0.28 2.00 16 43 H 0.08 1.69 7.06 -51.92 -0.37 1.32 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 358.52 15.07 5.40 5.40 Total: -1.00 -32.88 358.52 -7.82 -40.70 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -4.40 Total: 0.98 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -3.77 Total: 6.99 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.13 Total: -56.94 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.15 Total: -13.65 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.88 -7.82 -40.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972778349.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.113 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds