Wall clock time and date at job start Wed Apr 1 2020 00:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86796 * 120.00326 * 2 1 4 4 H 1.48500 * 109.47416 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47085 * 299.99782 * 3 2 1 6 6 H 1.48503 * 109.47317 * 59.99687 * 3 2 1 7 7 C 1.38819 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00284 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99427 * 0.02562 * 7 2 1 10 10 C 1.46885 * 125.36074 * 0.02562 * 9 7 2 11 11 C 1.54527 * 106.66260 * 164.88466 * 10 9 7 12 12 C 1.53330 * 102.38119 * 27.59337 * 11 10 9 13 13 H 1.08991 * 105.07928 * 80.46380 * 12 11 10 14 14 C 1.48604 * 114.95572 * 196.30695 * 12 11 10 15 15 C 1.50984 * 116.02793 * 90.57912 * 14 12 11 16 16 N 1.44474 * 113.13188 * 32.07663 * 15 14 12 17 17 C 1.34772 * 117.13757 * 147.99368 * 16 15 14 18 18 O 1.21575 * 120.00168 * 176.11594 * 17 16 15 19 19 C 1.47689 * 119.99987 * 356.10820 * 17 16 15 20 20 C 1.41602 * 120.03302 * 46.99142 * 19 17 16 21 21 C 1.35781 * 119.54826 * 179.73403 * 20 19 17 22 22 C 1.40853 * 119.39006 * 0.51421 * 21 20 19 23 23 N 1.32495 * 133.41638 * 179.75212 * 22 21 20 24 24 N 1.28523 * 110.24322 * 180.02562 * 23 22 21 25 25 N 1.28985 * 110.84757 * 359.97438 * 24 23 22 26 26 N 1.36924 * 119.93648 * 359.75925 * 22 21 20 27 27 C 1.35499 * 120.84415 * 359.97438 * 26 22 21 28 28 C 1.43938 * 125.72345 * 328.27134 * 16 15 14 29 29 C 1.48178 * 125.35531 * 180.02562 * 9 7 2 30 30 H 1.09000 * 109.74494 * 57.24947 * 29 9 7 31 31 H 0.97002 * 119.99628 * 0.02562 * 1 2 3 32 32 H 1.09000 * 110.02003 * 45.58915 * 10 9 7 33 33 H 1.08995 * 110.06148 * 284.20657 * 10 9 7 34 34 H 1.08997 * 110.82965 * 269.37192 * 11 10 9 35 35 H 1.08996 * 110.99090 * 145.88830 * 11 10 9 36 36 H 1.08997 * 108.17271 * 328.87766 * 14 12 11 37 37 H 1.09003 * 108.00879 * 212.16085 * 14 12 11 38 38 H 1.08994 * 108.75378 * 271.13402 * 15 14 12 39 39 H 1.09004 * 108.75122 * 153.01406 * 15 14 12 40 40 H 1.08002 * 120.22223 * 359.97265 * 20 19 17 41 41 H 1.08000 * 120.30033 * 180.27145 * 21 20 19 42 42 H 1.08002 * 119.83054 * 179.97438 * 27 26 22 43 43 H 1.08999 * 108.41621 * 152.79546 * 28 16 15 44 44 H 1.08993 * 108.42044 * 270.04225 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1370 -2.5252 -0.0005 11 6 -0.4444 -3.9896 -0.3861 12 6 0.8069 -4.7282 0.1035 13 1 0.6558 -4.8629 1.1744 14 6 0.9873 -6.0938 -0.4540 15 6 1.7888 -6.1880 -1.7301 16 7 2.8213 -5.1821 -1.8273 17 6 3.9469 -5.5184 -2.4879 18 8 4.8198 -4.6904 -2.6623 19 6 4.1200 -6.8929 -2.9998 20 6 3.0706 -7.5207 -3.7138 21 6 3.2423 -8.7826 -4.1847 22 6 4.4592 -9.4502 -3.9449 23 7 4.9158 -10.6530 -4.2618 24 7 6.1098 -10.8080 -3.8123 25 7 6.5068 -9.7505 -3.1896 26 7 5.4565 -8.8234 -3.2469 27 6 5.2909 -7.5622 -2.7801 28 6 2.7556 -3.8542 -1.2758 29 6 1.9432 -3.7349 0.0016 30 1 2.6006 -3.8379 0.8650 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5748 -1.8468 -0.7328 33 1 -0.5335 -2.3095 0.9916 34 1 -0.5565 -4.0909 -1.4656 35 1 -1.3341 -4.3507 0.1297 36 1 0.0007 -6.5180 -0.6403 37 1 1.4800 -6.7044 0.3028 38 1 1.1123 -6.0787 -2.5776 39 1 2.2533 -7.1728 -1.7802 40 1 2.1414 -6.9978 -3.8859 41 1 2.4516 -9.2713 -4.7345 42 1 6.0883 -7.0835 -2.2310 43 1 3.7713 -3.5158 -1.0711 44 1 2.3203 -3.1918 -2.0238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042148564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:01 Heat of formation + Delta-G solvation = 165.348586 kcal Electronic energy + Delta-G solvation = -29942.000826 eV Core-core repulsion = 25899.125375 eV Total energy + Delta-G solvation = -4042.875452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.82972 -41.07864 -39.13468 -38.16105 -35.88959 -34.55514 -33.40559 -32.75897 -31.66821 -31.04595 -29.59929 -28.78631 -26.24651 -25.23451 -24.71430 -23.98761 -23.22919 -22.85180 -20.96099 -20.38396 -19.31887 -18.01321 -18.00522 -17.33737 -17.22541 -16.91197 -16.34566 -15.68530 -15.49375 -15.19054 -14.96071 -14.78617 -14.36622 -14.03922 -13.90482 -13.54412 -13.48229 -12.97308 -12.89686 -12.63279 -12.52442 -12.28629 -12.11330 -11.89842 -11.69672 -11.56774 -11.48281 -11.20984 -10.94948 -10.83176 -10.59723 -10.24791 -10.16367 -10.06212 -9.97285 -9.74245 -9.67967 -9.14310 -8.72145 -8.53150 -7.01008 -5.79189 -3.18112 -0.25985 -0.03218 1.15978 1.60310 2.25726 2.62261 2.89713 3.19416 3.34738 3.41746 3.43379 3.59476 3.90996 3.95927 4.33246 4.36636 4.40882 4.64269 4.72382 4.82463 4.88942 5.06059 5.12362 5.17345 5.21559 5.29664 5.33980 5.44600 5.45539 5.63108 5.63919 5.79612 5.80067 5.89235 6.03644 6.09531 6.33321 6.39180 6.44362 6.64460 6.73238 6.87547 7.19565 7.43592 7.54492 7.74717 7.91116 7.92966 8.18483 9.11072 9.69948 10.31958 11.28094 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.021425 B = 0.002721 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.589779 B =10289.634710 C =11162.126699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.230 4.230 8 H 0.080 0.920 9 N -0.594 5.594 10 C 0.165 3.835 11 C -0.136 4.136 12 C -0.095 4.095 13 H 0.058 0.942 14 C -0.108 4.108 15 C 0.105 3.895 16 N -0.572 5.572 17 C 0.552 3.448 18 O -0.518 6.518 19 C -0.136 4.136 20 C -0.035 4.035 21 C -0.095 4.095 22 C 0.250 3.750 23 N -0.324 5.324 24 N -0.006 5.006 25 N -0.105 5.105 26 N -0.303 5.303 27 C 0.164 3.836 28 C 0.101 3.899 29 C 0.166 3.834 30 H 0.043 0.957 31 H 0.252 0.748 32 H 0.084 0.916 33 H 0.021 0.979 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.169 0.831 41 H 0.174 0.826 42 H 0.191 0.809 43 H 0.079 0.921 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.607 -17.204 -5.401 18.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.201 4.201 3 Si 0.742 3.258 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.358 4.358 8 H 0.098 0.902 9 N -0.319 5.319 10 C 0.041 3.959 11 C -0.175 4.175 12 C -0.114 4.114 13 H 0.077 0.923 14 C -0.147 4.147 15 C -0.018 4.018 16 N -0.303 5.303 17 C 0.336 3.664 18 O -0.395 6.395 19 C -0.145 4.145 20 C -0.061 4.061 21 C -0.118 4.118 22 C -0.005 4.005 23 N -0.183 5.183 24 N 0.001 4.999 25 N -0.088 5.088 26 N -0.082 5.082 27 C 0.034 3.966 28 C -0.023 4.023 29 C 0.057 3.943 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.186 0.814 41 H 0.192 0.808 42 H 0.208 0.792 43 H 0.097 0.903 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.090 -17.717 -5.452 18.654 hybrid contribution -0.063 1.652 0.269 1.675 sum 2.027 -16.065 -5.183 17.002 Atomic orbital electron populations 1.69931 1.04909 1.24976 1.56893 1.24794 0.95719 0.97766 1.01857 0.86038 0.78884 0.83559 0.77270 1.20341 1.21659 1.21724 1.19099 0.90600 0.82144 1.43981 0.90236 1.44786 1.01587 0.98982 1.86587 1.21427 0.84096 0.90231 1.00158 1.22674 0.95529 0.99130 1.00135 1.20080 0.96855 0.93382 1.01088 0.92316 1.20342 1.00499 0.97568 0.96255 1.21079 0.90386 0.90876 0.99429 1.46754 1.15632 1.15193 1.52757 1.17795 0.83079 0.85701 0.79833 1.90880 1.41841 1.50190 1.56568 1.19834 0.93906 0.97005 1.03750 1.21709 0.98933 0.93527 0.91887 1.20334 0.94007 0.94517 1.02923 1.23118 0.92707 0.90779 0.93881 1.75183 1.04635 1.13397 1.25133 1.77884 1.04232 1.14940 1.02845 1.82893 1.06422 0.94465 1.24993 1.48786 1.12517 1.12673 1.34202 1.21597 0.98746 0.80604 0.95616 1.21827 1.02827 0.79521 0.98104 1.20307 0.92860 0.87151 0.93943 0.93882 0.93714 0.89841 0.96107 0.92515 0.92053 0.90251 0.91970 0.91656 0.90496 0.81397 0.80815 0.79188 0.90275 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.54 10.23 55.49 0.57 -24.97 16 2 C -0.01 -0.14 5.48 -17.43 -0.10 -0.23 16 3 Si 0.91 21.38 29.55 -169.99 -5.02 16.36 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.23 -5.97 9.82 -15.06 -0.15 -6.12 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.59 -13.68 2.91 -164.79 -0.48 -14.16 16 10 C 0.17 3.64 5.53 -3.03 -0.02 3.62 16 11 C -0.14 -2.16 6.47 -25.76 -0.17 -2.32 16 12 C -0.09 -1.35 2.32 -93.47 -0.22 -1.57 16 13 H 0.06 0.86 8.01 -51.93 -0.42 0.45 16 14 C -0.11 -1.05 5.55 -29.89 -0.17 -1.22 16 15 C 0.11 0.92 4.87 -6.14 -0.03 0.89 16 16 N -0.57 -7.14 3.13 -180.39 -0.56 -7.70 16 17 C 0.55 6.83 7.13 -12.40 -0.09 6.74 16 18 O -0.52 -8.53 16.23 5.30 0.09 -8.44 16 19 C -0.14 -1.19 4.77 -105.33 -0.50 -1.69 16 20 C -0.03 -0.21 7.48 -39.18 -0.29 -0.50 16 21 C -0.09 -0.57 10.09 -39.47 -0.40 -0.97 16 22 C 0.25 2.49 8.02 -156.27 -1.25 1.24 16 23 N -0.32 -4.00 12.26 31.10 0.38 -3.62 16 24 N -0.01 -0.08 13.35 60.35 0.81 0.73 16 25 N -0.10 -1.34 13.99 60.35 0.84 -0.49 16 26 N -0.30 -3.24 3.92 -12.06 -0.05 -3.29 16 27 C 0.16 1.49 10.83 -16.51 -0.18 1.31 16 28 C 0.10 1.70 5.35 -5.99 -0.03 1.67 16 29 C 0.17 2.98 3.54 -68.46 -0.24 2.74 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.08 2.10 6.44 -51.93 -0.33 1.76 16 33 H 0.02 0.51 8.11 -51.93 -0.42 0.08 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.62 7.94 -51.93 -0.41 0.21 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.46 7.13 -51.93 -0.37 0.09 16 39 H 0.08 0.49 5.20 -51.93 -0.27 0.22 16 40 H 0.17 0.62 6.13 -52.49 -0.32 0.30 16 41 H 0.17 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.19 1.52 8.06 -52.49 -0.42 1.10 16 43 H 0.08 1.47 7.03 -51.93 -0.37 1.10 16 44 H 0.08 1.48 7.85 -51.93 -0.41 1.08 16 LS Contribution 352.80 15.07 5.32 5.32 Total: -1.00 -32.29 352.80 -7.34 -39.63 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -5.40 Total: -2.94 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -3.83 Total: 3.58 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 1.51 Total: -53.51 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.29 -7.34 -39.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042148564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.982 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds