Wall clock time and date at job start Wed Apr 1 2020 00:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86796 * 120.00326 * 2 1 4 4 H 1.48500 * 109.47416 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47085 * 299.99782 * 3 2 1 6 6 H 1.48503 * 109.47317 * 59.99687 * 3 2 1 7 7 C 1.38819 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00284 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99427 * 0.02562 * 7 2 1 10 10 C 1.46885 * 125.36074 * 0.02562 * 9 7 2 11 11 C 1.54527 * 106.66260 * 164.88466 * 10 9 7 12 12 C 1.53330 * 102.38119 * 27.59337 * 11 10 9 13 13 H 1.08991 * 105.07928 * 80.46380 * 12 11 10 14 14 C 1.48604 * 114.95572 * 196.30695 * 12 11 10 15 15 C 1.50984 * 116.02793 * 90.57912 * 14 12 11 16 16 N 1.44474 * 113.13188 * 32.07663 * 15 14 12 17 17 C 1.34772 * 117.13757 * 147.99368 * 16 15 14 18 18 O 1.21575 * 120.00168 * 176.11594 * 17 16 15 19 19 C 1.47689 * 119.99987 * 356.10820 * 17 16 15 20 20 C 1.41602 * 120.03302 * 46.99142 * 19 17 16 21 21 C 1.35781 * 119.54826 * 179.73403 * 20 19 17 22 22 C 1.40853 * 119.39006 * 0.51421 * 21 20 19 23 23 N 1.32495 * 133.41638 * 179.75212 * 22 21 20 24 24 N 1.28523 * 110.24322 * 180.02562 * 23 22 21 25 25 N 1.28985 * 110.84757 * 359.97438 * 24 23 22 26 26 N 1.36924 * 119.93648 * 359.75925 * 22 21 20 27 27 C 1.35499 * 120.84415 * 359.97438 * 26 22 21 28 28 C 1.43938 * 125.72345 * 328.27134 * 16 15 14 29 29 C 1.48178 * 125.35531 * 180.02562 * 9 7 2 30 30 H 1.09000 * 109.74494 * 57.24947 * 29 9 7 31 31 H 0.97002 * 119.99628 * 0.02562 * 1 2 3 32 32 H 1.09000 * 110.02003 * 45.58915 * 10 9 7 33 33 H 1.08995 * 110.06148 * 284.20657 * 10 9 7 34 34 H 1.08997 * 110.82965 * 269.37192 * 11 10 9 35 35 H 1.08996 * 110.99090 * 145.88830 * 11 10 9 36 36 H 1.08997 * 108.17271 * 328.87766 * 14 12 11 37 37 H 1.09003 * 108.00879 * 212.16085 * 14 12 11 38 38 H 1.08994 * 108.75378 * 271.13402 * 15 14 12 39 39 H 1.09004 * 108.75122 * 153.01406 * 15 14 12 40 40 H 1.08002 * 120.22223 * 359.97265 * 20 19 17 41 41 H 1.08000 * 120.30033 * 180.27145 * 21 20 19 42 42 H 1.08002 * 119.83054 * 179.97438 * 27 26 22 43 43 H 1.08999 * 108.41621 * 152.79546 * 28 16 15 44 44 H 1.08993 * 108.42044 * 270.04225 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1370 -2.5252 -0.0005 11 6 -0.4444 -3.9896 -0.3861 12 6 0.8069 -4.7282 0.1035 13 1 0.6558 -4.8629 1.1744 14 6 0.9873 -6.0938 -0.4540 15 6 1.7888 -6.1880 -1.7301 16 7 2.8213 -5.1821 -1.8273 17 6 3.9469 -5.5184 -2.4879 18 8 4.8198 -4.6904 -2.6623 19 6 4.1200 -6.8929 -2.9998 20 6 3.0706 -7.5207 -3.7138 21 6 3.2423 -8.7826 -4.1847 22 6 4.4592 -9.4502 -3.9449 23 7 4.9158 -10.6530 -4.2618 24 7 6.1098 -10.8080 -3.8123 25 7 6.5068 -9.7505 -3.1896 26 7 5.4565 -8.8234 -3.2469 27 6 5.2909 -7.5622 -2.7801 28 6 2.7556 -3.8542 -1.2758 29 6 1.9432 -3.7349 0.0016 30 1 2.6006 -3.8379 0.8650 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5748 -1.8468 -0.7328 33 1 -0.5335 -2.3095 0.9916 34 1 -0.5565 -4.0909 -1.4656 35 1 -1.3341 -4.3507 0.1297 36 1 0.0007 -6.5180 -0.6403 37 1 1.4800 -6.7044 0.3028 38 1 1.1123 -6.0787 -2.5776 39 1 2.2533 -7.1728 -1.7802 40 1 2.1414 -6.9978 -3.8859 41 1 2.4516 -9.2713 -4.7345 42 1 6.0883 -7.0835 -2.2310 43 1 3.7713 -3.5158 -1.0711 44 1 2.3203 -3.1918 -2.0238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042148564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:01 Heat of formation + Delta-G solvation = 143.765994 kcal Electronic energy + Delta-G solvation = -29942.936718 eV Core-core repulsion = 25899.125375 eV Total energy + Delta-G solvation = -4043.811343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.62176 -42.08193 -40.22611 -39.19170 -37.11323 -35.33593 -34.87923 -33.67747 -33.10186 -31.80126 -30.93769 -30.30100 -27.21242 -26.66207 -25.59239 -25.19659 -24.01005 -23.99750 -22.15956 -21.83631 -20.17449 -19.11795 -18.90225 -18.69865 -18.18736 -17.91557 -17.38478 -16.94035 -16.49275 -16.46336 -16.17775 -15.82808 -15.60135 -15.17839 -14.83710 -14.56899 -14.41050 -14.16142 -14.02097 -13.79782 -13.63167 -13.48144 -13.25694 -13.05641 -12.94604 -12.78726 -12.64841 -12.58101 -12.34926 -12.27853 -11.98182 -11.67734 -11.51835 -11.44093 -11.26219 -11.07701 -10.96769 -10.70198 -9.86998 -9.60096 -8.92707 -7.82439 -5.21645 -1.00115 -0.65193 0.39122 0.75332 1.39696 1.44341 1.45761 1.55025 1.78407 2.02907 2.47050 2.50481 2.87833 3.16199 3.31239 3.31796 3.58685 3.65955 3.73119 3.78811 3.85832 4.01928 4.05640 4.20755 4.25546 4.39215 4.41385 4.45023 4.57506 4.66541 4.71731 4.78064 4.94995 4.96292 4.99114 5.06174 5.08860 5.12517 5.20684 5.42033 5.49221 5.57302 5.61544 5.74397 5.85633 6.21131 6.26736 6.90615 7.08961 7.12031 7.77831 8.38137 9.22730 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.021425 B = 0.002721 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.589779 B =10289.634710 C =11162.126699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.060 4.060 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.233 4.233 8 H 0.075 0.925 9 N -0.615 5.615 10 C 0.166 3.834 11 C -0.119 4.119 12 C -0.082 4.082 13 H 0.054 0.946 14 C -0.107 4.107 15 C 0.092 3.908 16 N -0.571 5.571 17 C 0.556 3.444 18 O -0.567 6.567 19 C -0.123 4.123 20 C -0.020 4.020 21 C -0.071 4.071 22 C 0.241 3.759 23 N -0.343 5.343 24 N -0.026 5.026 25 N -0.131 5.131 26 N -0.305 5.305 27 C 0.156 3.844 28 C 0.126 3.874 29 C 0.161 3.839 30 H 0.031 0.969 31 H 0.246 0.754 32 H 0.045 0.955 33 H -0.015 1.015 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.205 0.795 41 H 0.216 0.784 42 H 0.192 0.808 43 H 0.051 0.949 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.020 -19.964 -6.584 21.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.254 4.254 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.362 4.362 8 H 0.093 0.907 9 N -0.340 5.340 10 C 0.042 3.958 11 C -0.157 4.157 12 C -0.101 4.101 13 H 0.073 0.927 14 C -0.145 4.145 15 C -0.029 4.029 16 N -0.300 5.300 17 C 0.343 3.657 18 O -0.447 6.447 19 C -0.132 4.132 20 C -0.046 4.046 21 C -0.094 4.094 22 C -0.012 4.012 23 N -0.203 5.203 24 N -0.019 5.019 25 N -0.114 5.114 26 N -0.083 5.083 27 C 0.027 3.973 28 C 0.001 3.999 29 C 0.054 3.946 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.003 0.997 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.134 0.866 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.129 0.871 40 H 0.222 0.778 41 H 0.233 0.767 42 H 0.209 0.791 43 H 0.070 0.930 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.465 -20.544 -6.635 21.594 hybrid contribution 0.435 2.558 0.667 2.679 sum 0.901 -17.986 -5.967 18.972 Atomic orbital electron populations 1.70150 1.05933 1.24934 1.58425 1.25498 0.96534 1.00540 1.02788 0.85154 0.78155 0.80185 0.76754 1.19567 1.21836 1.21973 1.19335 0.90706 0.83756 1.42437 0.90739 1.45037 1.02456 1.00174 1.86347 1.21228 0.83360 0.94097 0.97148 1.22527 0.97287 0.94453 1.01412 1.20077 0.93875 0.94664 1.01511 0.92712 1.20385 1.03039 0.94087 0.96988 1.21582 0.90015 0.91003 1.00324 1.46691 1.16957 1.14201 1.52185 1.18152 0.82075 0.86608 0.78904 1.90871 1.43436 1.52041 1.58310 1.19479 0.94805 0.94820 1.04124 1.22030 0.99035 0.93197 0.90295 1.20848 0.92950 0.93977 1.01605 1.23733 0.93636 0.90303 0.93521 1.75081 1.04514 1.14865 1.25852 1.77852 1.05008 1.15506 1.03518 1.82829 1.07610 0.94951 1.26023 1.48721 1.12412 1.12768 1.34424 1.21639 0.99276 0.80323 0.96100 1.21075 1.00465 0.81781 0.96610 1.20495 0.94274 0.86064 0.93803 0.95130 0.94430 0.93647 0.99687 0.90941 0.89349 0.86573 0.90493 0.88384 0.87112 0.77801 0.76730 0.79088 0.93030 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.82 10.23 21.65 0.22 -54.60 16 2 C -0.06 -3.35 5.48 84.86 0.47 -2.89 16 3 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.23 -12.59 9.82 84.03 0.83 -11.76 16 8 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 9 N -0.62 -29.21 2.91 -675.28 -1.97 -31.18 16 10 C 0.17 7.51 5.53 86.83 0.48 7.99 16 11 C -0.12 -3.46 6.47 31.22 0.20 -3.26 16 12 C -0.08 -2.10 2.32 -12.64 -0.03 -2.13 16 13 H 0.05 1.46 8.01 -2.39 -0.02 1.44 16 14 C -0.11 -1.47 5.55 28.55 0.16 -1.31 16 15 C 0.09 1.06 4.87 86.10 0.42 1.48 16 16 N -0.57 -12.68 3.13 -842.88 -2.64 -15.32 16 17 C 0.56 12.62 7.13 86.74 0.62 13.24 16 18 O -0.57 -18.67 16.23 -3.95 -0.06 -18.73 16 19 C -0.12 -1.73 4.77 -20.32 -0.10 -1.83 16 20 C -0.02 -0.12 7.48 22.53 0.17 0.05 16 21 C -0.07 -0.46 10.09 22.34 0.23 -0.23 16 22 C 0.24 4.06 8.02 134.16 1.08 5.13 16 23 N -0.34 -7.84 12.26 -55.53 -0.68 -8.52 16 24 N -0.03 -0.68 13.35 37.02 0.49 -0.19 16 25 N -0.13 -3.29 13.99 37.02 0.52 -2.77 16 26 N -0.31 -5.98 3.92 -192.06 -0.75 -6.73 16 27 C 0.16 2.55 10.83 83.75 0.91 3.46 16 28 C 0.13 4.25 5.35 86.48 0.46 4.71 16 29 C 0.16 5.76 3.54 43.72 0.15 5.91 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 32 H 0.05 2.38 6.44 -2.39 -0.02 2.36 16 33 H -0.01 -0.76 8.11 -2.39 -0.02 -0.78 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.12 0.92 7.94 -2.39 -0.02 0.90 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.10 0.61 7.13 -2.39 -0.02 0.60 16 39 H 0.11 0.62 5.20 -2.38 -0.01 0.61 16 40 H 0.21 -0.13 6.13 -2.91 -0.02 -0.14 16 41 H 0.22 -0.30 8.06 -2.91 -0.02 -0.32 16 42 H 0.19 2.97 8.06 -2.91 -0.02 2.94 16 43 H 0.05 2.00 7.03 -2.39 -0.02 1.98 16 44 H 0.04 1.76 7.85 -2.39 -0.02 1.75 16 Total: -1.00 -79.22 352.80 4.24 -74.98 By element: Atomic # 1 Polarization: -3.97 SS G_CDS: 1.05 Total: -2.92 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 6.04 Total: 18.56 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -4.81 Total: -119.31 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.06 Total: -18.73 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -79.22 4.24 -74.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042148564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.744 kcal (2) G-P(sol) polarization free energy of solvation -79.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds