Wall clock time and date at job start Wed Apr 1 2020 00:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 119.99807 * 2 1 4 4 H 1.48506 * 109.47016 * 239.99936 * 3 2 1 5 5 H 1.48501 * 109.46925 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47161 * 120.00072 * 3 2 1 7 7 C 1.38814 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00103 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99652 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99850 * 179.97438 * 9 7 2 11 11 H 1.09005 * 112.88096 * 23.65959 * 10 9 7 12 12 C 1.53951 * 113.74820 * 252.22925 * 10 9 7 13 13 C 1.53953 * 87.29074 * 220.78193 * 12 10 9 14 14 H 1.08996 * 113.66163 * 139.21209 * 13 12 10 15 15 N 1.46508 * 113.66007 * 270.26239 * 13 12 10 16 16 C 1.34774 * 119.99575 * 252.18853 * 15 13 12 17 17 O 1.21616 * 120.00589 * 0.02562 * 16 15 13 18 18 C 1.47316 * 119.99505 * 179.97438 * 16 15 13 19 19 C 1.39006 * 120.90664 * 0.02562 * 18 16 15 20 20 C 1.39724 * 119.29206 * 179.97438 * 19 18 16 21 21 C 1.35258 * 121.07851 * 0.02633 * 20 19 18 22 22 N 1.35710 * 121.57576 * 359.97438 * 21 20 19 23 23 N 1.40207 * 134.08991 * 179.97438 * 22 21 20 24 24 N 1.29024 * 106.96193 * 180.02562 * 23 22 21 25 25 N 1.28590 * 110.78461 * 359.97438 * 24 23 22 26 26 C 1.32043 * 110.21566 * 359.71638 * 25 24 23 27 27 C 1.52908 * 113.65962 * 154.99599 * 10 9 7 28 28 C 1.52906 * 121.14322 * 265.18845 * 27 10 9 29 29 C 1.53957 * 86.77902 * 100.81952 * 28 27 10 30 30 C 1.52912 * 121.13762 * 13.75630 * 27 10 9 31 31 H 0.96998 * 120.00657 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00562 * 0.02562 * 9 7 2 33 33 H 1.09002 * 113.57784 * 335.38602 * 12 10 9 34 34 H 1.08994 * 113.57760 * 106.17907 * 12 10 9 35 35 H 0.96991 * 119.99477 * 72.19064 * 15 13 12 36 36 H 1.07998 * 120.35157 * 359.97438 * 19 18 16 37 37 H 1.08000 * 119.45636 * 180.02562 * 20 19 18 38 38 H 1.07994 * 119.21169 * 179.97438 * 21 20 19 39 39 H 1.08997 * 113.66080 * 346.35409 * 28 27 10 40 40 H 1.08997 * 113.66819 * 215.29213 * 28 27 10 41 41 H 1.09004 * 113.57788 * 139.34050 * 29 28 27 42 42 H 1.08996 * 113.58263 * 270.12959 * 29 28 27 43 43 H 1.09002 * 113.66342 * 144.69991 * 30 27 10 44 44 H 1.08994 * 113.65844 * 13.64914 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 1 3.0670 -3.5641 0.4006 12 6 1.9947 -4.4081 -1.3439 13 6 1.8267 -5.7027 -0.5278 14 1 1.0963 -6.3936 -0.9487 15 7 3.0953 -6.3510 -0.1859 16 6 3.4542 -7.4955 -0.8006 17 8 2.7253 -7.9899 -1.6392 18 6 4.7301 -8.1470 -0.4573 19 6 5.5778 -7.5981 0.4979 20 6 6.7796 -8.2447 0.7978 21 6 7.1294 -9.3927 0.1739 22 7 6.3320 -9.9629 -0.7646 23 7 6.4284 -11.1157 -1.5567 24 7 5.3627 -11.1639 -2.2825 25 7 4.5964 -10.1614 -2.0350 26 6 5.1359 -9.3928 -1.1067 27 6 1.2662 -4.8231 0.5904 28 6 1.4197 -5.2183 2.0595 29 6 0.1027 -4.4617 2.3107 30 6 -0.2399 -4.7148 0.8313 31 1 -0.4851 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 1.1210 -4.1548 -1.9444 34 1 2.9248 -4.3676 -1.9106 35 1 3.6768 -5.9565 0.4826 36 1 5.3102 -6.6817 1.0029 37 1 7.4400 -7.8208 1.5398 38 1 8.0656 -9.8669 0.4287 39 1 2.2837 -4.7659 2.5462 40 1 1.3476 -6.2919 2.2337 41 1 -0.5659 -4.9691 3.0061 42 1 0.2442 -3.4081 2.5515 43 1 -0.7785 -5.6468 0.6602 44 1 -0.7016 -3.8602 0.3368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078634721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:55 Heat of formation + Delta-G solvation = 184.302016 kcal Electronic energy + Delta-G solvation = -29323.588001 eV Core-core repulsion = 25281.534432 eV Total energy + Delta-G solvation = -4042.053569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -43.70383 -40.78819 -39.50250 -38.51974 -35.13520 -34.48556 -34.07190 -32.52447 -32.31723 -30.92850 -29.77864 -26.07233 -25.50194 -24.80467 -24.68066 -24.18041 -23.66209 -22.20170 -21.27390 -20.22547 -19.17160 -18.30614 -18.00256 -17.66170 -17.23196 -16.89382 -16.23106 -15.92282 -15.21101 -15.10189 -14.83217 -14.71237 -14.20117 -13.99038 -13.60639 -13.49564 -13.30740 -12.83669 -12.77286 -12.70127 -12.54107 -12.07717 -11.92315 -11.79618 -11.68633 -11.40657 -11.28769 -10.92712 -10.87895 -10.69522 -10.66451 -10.25751 -10.24677 -10.08023 -9.93513 -9.70325 -9.45835 -9.13794 -8.90787 -8.78777 -7.03705 -5.85488 -3.14398 -0.49784 0.04813 1.20609 1.77817 2.13358 2.76123 3.07569 3.13061 3.37330 3.42458 3.43719 3.52808 3.83761 3.99596 4.31308 4.51078 4.57599 4.71280 4.82010 4.94051 4.96907 5.00302 5.06667 5.12912 5.16544 5.23144 5.35918 5.38265 5.63305 5.76498 5.82691 5.89387 5.93879 5.99235 6.05040 6.08500 6.24356 6.34440 6.38359 6.52602 6.57830 6.81958 6.86328 6.97682 7.38233 7.60877 8.03589 8.05670 8.33018 9.44671 10.01616 10.36096 11.36529 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.002560 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.692402 B =10936.213548 C =11482.192130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.247 4.247 8 H 0.070 0.930 9 N -0.707 5.707 10 C 0.192 3.808 11 H 0.075 0.925 12 C -0.175 4.175 13 C 0.130 3.870 14 H 0.100 0.900 15 N -0.694 5.694 16 C 0.559 3.441 17 O -0.500 6.500 18 C -0.093 4.093 19 C -0.020 4.020 20 C -0.142 4.142 21 C 0.126 3.874 22 N -0.309 5.309 23 N -0.108 5.108 24 N -0.009 5.009 25 N -0.288 5.288 26 C 0.273 3.727 27 C -0.121 4.121 28 C -0.127 4.127 29 C -0.131 4.131 30 C -0.110 4.110 31 H 0.257 0.743 32 H 0.388 0.612 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.398 0.602 36 H 0.165 0.835 37 H 0.176 0.824 38 H 0.184 0.816 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.463 -16.190 7.359 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.346 5.346 10 C 0.079 3.921 11 H 0.093 0.907 12 C -0.217 4.217 13 C 0.025 3.975 14 H 0.118 0.882 15 N -0.345 5.345 16 C 0.343 3.657 17 O -0.375 6.375 18 C -0.102 4.102 19 C -0.046 4.046 20 C -0.165 4.165 21 C -0.001 4.001 22 N -0.090 5.090 23 N -0.091 5.091 24 N -0.002 5.002 25 N -0.145 5.145 26 C 0.014 3.986 27 C -0.124 4.124 28 C -0.164 4.164 29 C -0.168 4.168 30 C -0.148 4.148 31 H 0.067 0.933 32 H 0.224 0.776 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.233 0.767 36 H 0.183 0.817 37 H 0.194 0.806 38 H 0.202 0.798 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.929 -17.683 5.693 22.633 hybrid contribution 0.847 1.749 0.912 2.146 sum 13.776 -15.934 6.605 22.075 Atomic orbital electron populations 1.69633 1.05109 1.25964 1.57047 1.24743 0.95482 0.97715 1.02633 0.86295 0.78581 0.83618 0.77814 1.21249 1.21692 1.21280 1.19210 0.90963 0.84182 1.43433 0.91238 1.42389 1.05936 0.99519 1.86715 1.21285 0.94250 0.84630 0.91920 0.90679 1.24305 1.02184 0.95127 1.00088 1.21797 0.84447 0.93675 0.97575 0.88193 1.45414 1.22704 1.24029 1.42313 1.17370 0.84659 0.81183 0.82477 1.90926 1.52038 1.63377 1.31121 1.20396 0.98315 0.92278 0.99252 1.22077 0.91675 0.98746 0.92099 1.21044 0.98544 0.94620 1.02334 1.21800 0.96360 0.94223 0.87698 1.49021 1.15105 1.18067 1.26796 1.82818 1.19121 1.00029 1.07118 1.78071 0.96309 1.12969 1.12825 1.75320 1.23018 1.01509 1.14645 1.23626 0.84566 0.95743 0.94678 1.23619 0.97898 0.97919 0.92964 1.22653 0.98655 0.99272 0.95826 1.22738 0.96530 1.01454 0.96125 1.22457 0.93720 1.01766 0.96834 0.93323 0.77641 0.89363 0.92158 0.76706 0.81739 0.80645 0.79845 0.91724 0.90912 0.92467 0.89137 0.90672 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.68 13.06 55.49 0.72 -25.96 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.34 9.97 -15.06 -0.15 -6.49 16 8 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 9 N -0.71 -16.01 5.33 -52.99 -0.28 -16.29 16 10 C 0.19 3.31 4.27 -67.48 -0.29 3.02 16 11 H 0.08 1.24 8.10 -51.93 -0.42 0.81 16 12 C -0.17 -2.86 7.69 -25.75 -0.20 -3.06 16 13 C 0.13 1.81 4.12 -67.47 -0.28 1.53 16 14 H 0.10 1.53 7.46 -51.93 -0.39 1.15 16 15 N -0.69 -7.68 5.00 -54.47 -0.27 -7.95 16 16 C 0.56 7.22 7.77 -12.57 -0.10 7.12 16 17 O -0.50 -8.79 15.88 5.26 0.08 -8.71 16 18 C -0.09 -0.93 6.06 -102.71 -0.62 -1.55 16 19 C -0.02 -0.10 9.63 -38.74 -0.37 -0.47 16 20 C -0.14 -0.35 9.92 -40.09 -0.40 -0.75 16 21 C 0.13 0.57 11.15 -16.90 -0.19 0.38 16 22 N -0.31 -3.09 3.94 -10.99 -0.04 -3.14 16 23 N -0.11 -1.37 13.99 60.35 0.84 -0.52 16 24 N -0.01 -0.13 13.36 60.35 0.81 0.67 16 25 N -0.29 -4.61 11.75 32.20 0.38 -4.23 16 26 C 0.27 3.44 7.85 -154.51 -1.21 2.23 16 27 C -0.12 -1.73 0.92 -154.71 -0.14 -1.87 16 28 C -0.13 -1.55 7.49 -26.28 -0.20 -1.75 16 29 C -0.13 -1.85 8.08 -25.75 -0.21 -2.06 16 30 C -0.11 -1.63 7.47 -26.28 -0.20 -1.83 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.39 9.41 5.92 -40.82 -0.24 9.17 16 33 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.40 3.16 6.72 -40.82 -0.27 2.89 16 36 H 0.17 0.29 6.49 -52.49 -0.34 -0.05 16 37 H 0.18 -0.28 8.06 -52.49 -0.42 -0.71 16 38 H 0.18 0.15 8.06 -52.49 -0.42 -0.27 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.08 1.38 6.42 -51.93 -0.33 1.05 16 LS Contribution 371.43 15.07 5.60 5.60 Total: -1.00 -35.37 371.43 -7.18 -42.55 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.35 Total: 7.59 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -4.64 Total: -5.88 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 2.16 Total: -57.42 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.71 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.37 -7.18 -42.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078634721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.851 kcal (2) G-P(sol) polarization free energy of solvation -35.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 184.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds