Wall clock time and date at job start Wed Apr 1 2020 00:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86810 * 119.99697 * 2 1 4 4 H 1.48506 * 109.46852 * 239.99729 * 3 2 1 5 5 H 1.48493 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47072 * 119.99781 * 3 2 1 7 7 C 1.39893 * 120.00493 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00404 * 196.83406 * 7 2 1 9 9 C 1.41160 * 119.99511 * 16.83468 * 7 2 1 10 10 C 1.40870 * 120.15918 * 205.35633 * 9 7 2 11 11 C 1.36377 * 119.82582 * 179.97438 * 10 9 7 12 12 C 1.39483 * 120.16924 * 359.97438 * 11 10 9 13 13 N 1.39240 * 119.83042 * 180.02562 * 12 11 10 14 14 C 1.34771 * 119.99851 * 145.59965 * 13 12 11 15 15 O 1.21586 * 119.99989 * 354.64046 * 14 13 12 16 16 N 1.34778 * 120.00246 * 174.63988 * 14 13 12 17 17 C 1.46502 * 120.00332 * 180.02562 * 16 14 13 18 18 H 1.08996 * 107.91141 * 321.61060 * 17 16 14 19 19 C 1.51011 * 108.05147 * 205.00027 * 17 16 14 20 20 C 1.53685 * 110.87100 * 166.12303 * 19 17 16 21 21 C 1.51812 * 106.94096 * 79.02161 * 20 19 17 22 22 N 1.30313 * 127.91260 * 114.42040 * 21 20 19 23 23 N 1.29266 * 107.45947 * 180.02562 * 22 21 20 24 24 N 1.29148 * 109.43341 * 359.97438 * 23 22 21 25 25 N 1.28394 * 108.35658 * 359.97438 * 24 23 22 26 26 C 1.47653 * 127.74183 * 180.02562 * 25 24 23 27 27 C 1.50880 * 108.05193 * 78.18517 * 17 16 14 28 28 C 1.39480 * 120.33175 * 0.27584 * 12 11 10 29 29 C 1.36380 * 120.16858 * 359.48713 * 28 12 11 30 30 H 0.97004 * 120.00465 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.08507 * 359.94894 * 10 9 7 32 32 H 1.08006 * 119.91213 * 179.97438 * 11 10 9 33 33 H 0.96999 * 119.99865 * 325.31604 * 13 12 11 34 34 H 0.97006 * 119.99626 * 0.02562 * 16 14 13 35 35 H 1.09001 * 109.19676 * 286.47569 * 19 17 16 36 36 H 1.08997 * 109.20066 * 45.81284 * 19 17 16 37 37 H 1.08996 * 109.96343 * 198.38200 * 20 19 17 38 38 H 1.09001 * 109.95795 * 319.66733 * 20 19 17 39 39 H 1.09000 * 109.92232 * 5.15180 * 26 25 24 40 40 H 1.09008 * 109.91619 * 126.33052 * 26 25 24 41 41 H 1.08997 * 109.13273 * 314.71854 * 27 17 16 42 42 H 1.09002 * 109.12992 * 73.82745 * 27 17 16 43 43 H 1.07996 * 119.91660 * 179.72731 * 28 12 11 44 44 H 1.07996 * 120.08254 * 180.23495 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6179 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2777 2.7465 -0.0006 6 1 3.0964 1.6966 1.2125 7 6 2.0083 -1.2114 0.0005 8 1 3.0536 -1.2313 0.2714 9 6 1.3479 -2.4079 -0.3530 10 6 1.8187 -3.6451 0.1287 11 6 1.1752 -4.7968 -0.2167 12 6 0.0532 -4.7517 -1.0442 13 7 -0.5988 -5.9319 -1.3920 14 6 -1.9370 -5.9406 -1.5512 15 8 -2.5860 -4.9444 -1.2970 16 7 -2.5560 -7.0537 -1.9923 17 6 -4.0106 -7.0630 -2.1659 18 1 -4.4497 -6.4942 -1.3464 19 6 -4.4864 -8.4917 -2.0516 20 6 -6.0124 -8.5484 -1.8788 21 6 -6.6212 -8.3493 -3.2551 22 7 -7.3132 -9.2028 -3.9557 23 7 -7.6355 -8.6230 -5.0652 24 7 -7.1605 -7.4221 -5.0762 25 7 -6.5320 -7.2257 -3.9739 26 6 -5.8273 -6.0026 -3.5409 27 6 -4.3322 -6.3484 -3.4552 28 6 -0.4158 -3.5309 -1.5292 29 6 0.2144 -2.3705 -1.1885 30 1 -0.4851 0.8400 -0.0004 31 1 2.6874 -3.6815 0.7695 32 1 1.5352 -5.7462 0.1514 33 1 -0.0893 -6.7467 -1.5237 34 1 -2.0382 -7.8486 -2.1948 35 1 -4.2075 -9.0356 -2.9541 36 1 -4.0111 -8.9599 -1.1896 37 1 -6.3058 -9.5191 -1.4790 38 1 -6.3407 -7.7542 -1.2083 39 1 -5.9823 -5.2070 -4.2696 40 1 -6.1942 -5.6890 -2.5635 41 1 -3.7494 -5.4289 -3.5090 42 1 -4.0647 -6.9893 -4.2953 43 1 -1.2824 -3.5042 -2.1730 44 1 -0.1521 -1.4257 -1.5618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364070021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:48 Heat of formation + Delta-G solvation = 114.674881 kcal Electronic energy + Delta-G solvation = -28811.984443 eV Core-core repulsion = 24766.911614 eV Total energy + Delta-G solvation = -4045.072828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.58602 -40.35462 -38.46739 -37.20856 -35.52064 -34.53745 -34.09383 -33.03404 -31.79087 -31.32125 -29.53442 -28.92795 -26.71631 -25.46222 -24.79630 -23.85206 -21.94369 -21.50061 -21.28816 -20.95696 -20.03374 -18.24160 -17.91830 -17.35329 -17.14843 -16.99001 -15.90149 -15.68209 -15.32863 -15.10121 -14.57150 -14.41082 -14.11374 -13.96730 -13.73116 -13.44586 -13.13508 -13.06308 -12.71755 -12.44439 -12.34482 -12.17778 -12.09102 -11.89255 -11.79383 -11.55202 -11.32608 -11.24689 -11.14057 -11.11254 -11.01104 -10.55471 -10.31452 -10.06624 -9.95024 -9.61730 -9.31570 -9.17657 -8.76226 -7.56870 -7.03846 -6.76340 -4.32482 1.03249 1.70113 1.97689 2.59538 2.79849 3.02781 3.05020 3.06929 3.12374 3.48235 3.57455 3.89653 3.90743 3.97543 4.17706 4.31255 4.49020 4.59566 4.61315 4.62801 4.75269 4.79014 5.01215 5.10223 5.25323 5.32526 5.35346 5.46995 5.58472 5.66406 5.71691 5.92331 6.09799 6.30312 6.38637 6.70929 6.74970 7.00415 7.06072 7.23615 7.27680 7.56796 7.78159 7.94250 8.01503 8.22318 8.36368 8.38248 8.59250 8.85335 8.85889 9.02147 10.16519 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.022585 B = 0.002106 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.456231 B =13290.718340 C =14185.338472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.105 3.895 10 C -0.215 4.215 11 C -0.106 4.106 12 C 0.010 3.990 13 N -0.665 5.665 14 C 0.693 3.307 15 O -0.573 6.573 16 N -0.753 5.753 17 C 0.160 3.840 18 H 0.089 0.911 19 C -0.128 4.128 20 C -0.032 4.032 21 C 0.178 3.822 22 N -0.303 5.303 23 N -0.087 5.087 24 N -0.093 5.093 25 N -0.300 5.300 26 C 0.118 3.882 27 C -0.148 4.148 28 C -0.085 4.085 29 C -0.155 4.155 30 H 0.282 0.718 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.390 0.610 34 H 0.393 0.607 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.075 0.925 43 H 0.100 0.900 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 -13.710 -3.340 16.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.489 4.489 8 H 0.096 0.904 9 C 0.102 3.898 10 C -0.235 4.235 11 C -0.126 4.126 12 C -0.082 4.082 13 N -0.311 5.311 14 C 0.394 3.606 15 O -0.450 6.450 16 N -0.410 5.410 17 C 0.055 3.945 18 H 0.107 0.893 19 C -0.167 4.167 20 C -0.073 4.073 21 C -0.100 4.100 22 N -0.152 5.152 23 N -0.081 5.081 24 N -0.078 5.078 25 N -0.103 5.103 26 C -0.003 4.003 27 C -0.187 4.187 28 C -0.105 4.105 29 C -0.175 4.175 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.223 0.777 34 H 0.227 0.773 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.134 0.866 38 H 0.120 0.880 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.093 0.907 43 H 0.118 0.882 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.643 -12.994 -4.259 16.732 hybrid contribution 1.341 0.437 0.555 1.515 sum -8.302 -12.557 -3.704 15.502 Atomic orbital electron populations 1.69845 1.07517 1.29369 1.34738 1.25928 0.94747 1.01330 0.92381 0.86368 0.80125 0.80275 0.79952 1.18832 1.20344 1.19018 1.19507 0.97738 0.91190 1.40487 0.90447 1.17659 0.91270 0.92068 0.88782 1.20543 1.03815 0.92504 1.06618 1.20025 0.97055 0.97180 0.98354 1.16939 0.98998 0.84325 1.07948 1.42107 1.04689 1.11985 1.72273 1.16029 0.82352 0.83386 0.78864 1.90950 1.64493 1.32820 1.56714 1.45306 1.07203 1.14967 1.73494 1.20097 0.80867 0.95842 0.97733 0.89262 1.21652 0.94256 0.96240 1.04576 1.20636 0.93694 1.06136 0.86794 1.26005 1.00123 0.84294 0.99596 1.74950 1.14014 1.25389 1.00823 1.78868 1.17409 0.98295 1.13487 1.78876 1.09208 1.14511 1.05239 1.48749 1.35346 1.14461 1.11742 1.22855 0.91388 0.82523 1.03515 1.22189 0.93370 1.04027 0.99161 1.20385 0.98815 0.91622 0.99669 1.20980 0.98958 0.96671 1.00847 0.90748 0.88655 0.89296 0.77684 0.77331 0.90667 0.88425 0.86586 0.87953 0.85979 0.86509 0.87034 0.90675 0.88200 0.86259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.31 10.94 55.54 0.61 -19.70 16 2 C 0.07 1.84 5.15 -17.34 -0.09 1.75 16 3 Si 0.91 18.30 29.59 -169.99 -5.03 13.27 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.46 -11.89 9.04 -37.85 -0.34 -12.23 16 8 H 0.08 1.91 7.90 -52.49 -0.41 1.49 16 9 C 0.10 2.73 5.57 -106.80 -0.59 2.13 16 10 C -0.21 -5.02 9.74 -39.26 -0.38 -5.41 16 11 C -0.11 -2.21 9.90 -39.79 -0.39 -2.60 16 12 C 0.01 0.22 6.26 -83.57 -0.52 -0.31 16 13 N -0.66 -10.44 5.31 -14.10 -0.07 -10.52 16 14 C 0.69 10.47 7.88 -86.92 -0.69 9.79 16 15 O -0.57 -11.16 13.21 5.29 0.07 -11.09 16 16 N -0.75 -7.08 5.00 -60.72 -0.30 -7.39 16 17 C 0.16 1.22 1.91 -69.99 -0.13 1.09 16 18 H 0.09 0.79 7.14 -51.93 -0.37 0.42 16 19 C -0.13 -0.65 4.99 -27.37 -0.14 -0.79 16 20 C -0.03 -0.16 6.00 -26.98 -0.16 -0.32 16 21 C 0.18 1.64 7.10 -156.73 -1.11 0.52 16 22 N -0.30 -3.74 12.37 32.63 0.40 -3.34 16 23 N -0.09 -1.21 13.45 60.31 0.81 -0.40 16 24 N -0.09 -1.15 13.36 60.35 0.81 -0.35 16 25 N -0.30 -2.84 3.36 -57.21 -0.19 -3.03 16 26 C 0.12 0.81 6.73 -3.05 -0.02 0.79 16 27 C -0.15 -1.17 5.16 -27.44 -0.14 -1.31 16 28 C -0.08 -1.99 8.57 -39.79 -0.34 -2.33 16 29 C -0.15 -3.98 8.63 -39.26 -0.34 -4.32 16 30 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 31 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 32 H 0.09 1.56 8.06 -52.48 -0.42 1.14 16 33 H 0.39 4.61 8.83 -40.82 -0.36 4.25 16 34 H 0.39 2.61 8.56 -40.82 -0.35 2.26 16 35 H 0.07 0.42 7.92 -51.93 -0.41 0.01 16 36 H 0.10 0.38 8.13 -51.93 -0.42 -0.04 16 37 H 0.12 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.38 7.89 -51.93 -0.41 -0.03 16 39 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.12 0.60 7.88 -51.92 -0.41 0.20 16 41 H 0.11 1.14 7.23 -51.93 -0.38 0.77 16 42 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 43 H 0.10 2.32 6.49 -52.49 -0.34 1.98 16 44 H 0.12 3.20 6.18 -52.49 -0.32 2.88 16 LS Contribution 363.50 15.07 5.48 5.48 Total: -1.00 -33.40 363.50 -8.26 -41.66 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.43 Total: 8.97 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -5.40 Total: -13.56 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 2.06 Total: -44.73 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.07 Total: -11.09 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.40 -8.26 -41.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364070021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.332 kcal (2) G-P(sol) polarization free energy of solvation -33.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds