Wall clock time and date at job start Wed Apr 1 2020 01:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38343 * 120.34950 * 2 1 4 4 N 1.31929 * 121.08182 * 180.02562 * 3 2 1 5 5 C 1.31697 * 121.87664 * 0.02562 * 4 3 2 6 6 C 1.39521 * 120.56748 * 0.02562 * 5 4 3 7 7 C 1.47836 * 120.55607 * 180.02562 * 6 5 4 8 8 O 1.21561 * 119.99805 * 179.97438 * 7 6 5 9 9 N 1.34778 * 120.00394 * 359.96840 * 7 6 5 10 10 C 1.46500 * 119.99839 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.46634 * 180.02562 * 10 9 7 12 12 C 1.35355 * 126.74981 * 94.71215 * 11 10 9 13 13 N 1.35319 * 106.17318 * 179.84837 * 12 11 10 14 14 C 1.46496 * 125.86940 * 180.18147 * 13 12 11 15 15 C 1.53953 * 113.74180 * 14.04058 * 14 13 12 16 16 N 1.47809 * 86.03756 * 222.08241 * 15 14 13 17 17 C 1.36932 * 134.45924 * 204.64431 * 16 15 14 18 18 H 1.07996 * 120.00466 * 173.34713 * 17 16 15 19 19 C 1.38816 * 119.99701 * 353.34683 * 17 16 15 20 20 N 1.31618 * 120.00091 * 5.06592 * 19 17 16 21 21 Si 1.86798 * 119.99897 * 185.06238 * 19 17 16 22 22 H 1.48498 * 109.47257 * 94.98986 * 21 19 17 23 23 H 1.48500 * 109.47245 * 214.98579 * 21 19 17 24 24 H 1.48499 * 109.47268 * 334.98949 * 21 19 17 25 25 C 1.47582 * 91.05145 * 24.54726 * 16 15 14 26 26 N 1.28712 * 108.26089 * 0.41810 * 13 12 11 27 27 N 1.28637 * 110.18284 * 359.73613 * 26 13 12 28 28 C 1.38357 * 120.34656 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46968 * 269.97720 * 1 2 3 30 30 H 1.08996 * 109.47117 * 29.97715 * 1 2 3 31 31 H 1.08999 * 109.47288 * 149.97908 * 1 2 3 32 32 H 1.08003 * 119.46243 * 0.02718 * 3 2 1 33 33 H 1.08004 * 119.71090 * 180.02562 * 5 4 3 34 34 H 0.97001 * 119.99571 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.46911 * 299.99666 * 10 9 7 36 36 H 1.08996 * 109.47374 * 60.00222 * 10 9 7 37 37 H 1.07998 * 126.91350 * 359.97438 * 12 11 10 38 38 H 1.08997 * 112.94340 * 145.62762 * 14 13 12 39 39 H 1.08995 * 113.76627 * 336.34840 * 15 14 13 40 40 H 1.08996 * 113.76548 * 107.74232 * 15 14 13 41 41 H 0.96996 * 120.00106 * 180.02562 * 20 19 17 42 42 H 1.08998 * 113.76960 * 221.15231 * 25 16 15 43 43 H 1.08995 * 113.87127 * 89.76764 * 25 16 15 44 44 H 1.08001 * 120.85722 * 0.24940 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1938 0.0000 4 7 3.5252 1.2107 -0.0005 5 6 4.2349 0.1013 -0.0015 6 6 3.6054 -1.1437 -0.0027 7 6 4.4023 -2.3889 -0.0032 8 8 3.8432 -3.4683 -0.0038 9 7 5.7487 -2.3274 -0.0033 10 6 6.5383 -3.5614 -0.0045 11 6 8.0058 -3.2186 -0.0037 12 6 8.8144 -3.1223 1.0775 13 7 10.0401 -2.7989 0.6040 14 6 11.2450 -2.5918 1.4111 15 6 11.1161 -3.0995 2.8587 16 7 11.8085 -1.8533 3.2489 17 6 12.5716 -1.4755 4.3213 18 1 13.0634 -0.5140 4.3221 19 6 12.7129 -2.3284 5.4074 20 7 12.1971 -3.5385 5.3653 21 14 13.6352 -1.7585 6.9285 22 1 12.6691 -1.2267 7.9230 23 1 14.3725 -2.9045 7.5187 24 1 14.5973 -0.6913 6.5533 25 6 11.3496 -1.1809 2.0179 26 7 9.9642 -2.6996 -0.6771 27 7 8.7642 -2.9439 -1.0709 28 6 2.2060 -1.1940 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6630 2.1274 0.0004 33 1 5.3136 0.1559 -0.0015 34 1 6.1948 -1.4660 -0.0026 35 1 6.3014 -4.1451 0.8851 36 1 6.3013 -4.1436 -0.8949 37 1 8.5376 -3.2751 2.1102 38 1 12.1544 -2.9223 0.9094 39 1 10.0872 -3.1599 3.2131 40 1 11.6903 -4.0039 3.0597 41 1 12.2955 -4.1343 6.1244 42 1 12.1098 -0.5562 1.5490 43 1 10.3896 -0.6756 2.1231 44 1 1.6858 -2.1404 -0.0050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094282521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:35:40 Heat of formation + Delta-G solvation = 157.697299 kcal Electronic energy + Delta-G solvation = -27945.461910 eV Core-core repulsion = 23902.254673 eV Total energy + Delta-G solvation = -4043.207236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.12581 -40.96080 -39.28349 -38.39488 -35.44877 -34.08903 -33.46894 -32.68041 -31.97170 -31.15177 -28.03501 -27.81453 -27.05124 -25.34058 -24.52053 -24.24261 -23.12001 -21.98065 -21.17932 -20.70688 -19.67456 -18.28904 -17.41260 -17.29256 -16.99781 -16.63227 -16.13849 -15.58927 -15.49948 -15.14138 -14.85776 -14.65325 -14.46306 -14.11818 -13.82807 -13.56277 -13.34536 -13.29168 -13.02996 -13.01474 -12.92093 -12.35161 -12.25061 -12.15443 -11.88159 -11.43847 -11.20690 -11.01002 -10.99367 -10.61498 -10.54490 -10.24936 -10.17849 -9.94868 -9.80774 -9.59637 -9.45609 -9.25296 -9.15839 -9.08292 -7.28047 -6.09221 -3.43752 0.27068 0.79788 1.75709 2.33690 2.57294 2.59422 3.16333 3.24263 3.30305 3.31956 3.47623 3.90343 4.19270 4.27203 4.29219 4.40416 4.47114 4.53809 4.66686 4.70481 4.72108 4.86315 5.06514 5.09731 5.13125 5.17622 5.24519 5.35286 5.44169 5.50397 5.55620 5.63880 5.69507 5.77018 6.01675 6.08015 6.08637 6.10933 6.17674 6.25338 6.50140 6.73933 6.98233 7.13817 7.19976 7.46473 7.64370 7.89342 8.68542 8.72154 9.38390 10.16426 11.08525 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.013115 B = 0.002120 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.414272 B =13204.637432 C =14226.684339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.146 4.146 3 C 0.120 3.880 4 N -0.482 5.482 5 C 0.130 3.870 6 C -0.180 4.180 7 C 0.566 3.434 8 O -0.535 6.535 9 N -0.716 5.716 10 C 0.216 3.784 11 C -0.066 4.066 12 C -0.013 4.013 13 N -0.264 5.264 14 C 0.076 3.924 15 C 0.166 3.834 16 N -0.598 5.598 17 C -0.234 4.234 18 H 0.088 0.912 19 C 0.000 4.000 20 N -0.917 5.917 21 Si 0.918 3.082 22 H -0.286 1.286 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.119 3.881 26 N -0.088 5.088 27 N -0.266 5.266 28 C -0.018 4.018 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.403 0.597 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.192 0.808 38 H 0.132 0.868 39 H 0.043 0.957 40 H 0.088 0.912 41 H 0.259 0.741 42 H 0.062 0.938 43 H 0.043 0.957 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.340 4.832 -9.937 22.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.148 4.148 3 C -0.037 4.037 4 N -0.190 5.190 5 C -0.029 4.029 6 C -0.185 4.185 7 C 0.352 3.648 8 O -0.412 6.412 9 N -0.368 5.368 10 C 0.091 3.909 11 C -0.205 4.205 12 C -0.167 4.167 13 N -0.057 5.057 14 C -0.026 4.026 15 C 0.040 3.960 16 N -0.325 5.325 17 C -0.361 4.361 18 H 0.106 0.894 19 C -0.198 4.198 20 N -0.562 5.562 21 Si 0.747 3.253 22 H -0.213 1.213 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.008 4.008 26 N -0.067 5.067 27 N -0.133 5.133 28 C -0.045 4.045 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.178 0.822 33 H 0.176 0.824 34 H 0.238 0.762 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.209 0.791 38 H 0.150 0.850 39 H 0.061 0.939 40 H 0.106 0.894 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.265 5.097 -10.909 21.877 hybrid contribution -0.092 -0.318 2.017 2.044 sum -18.357 4.779 -8.892 20.950 Atomic orbital electron populations 1.20743 0.89523 1.03491 1.02986 1.20959 0.98095 0.93736 1.02041 1.22942 0.89920 0.97772 0.93068 1.67720 1.08063 1.30921 1.12261 1.23004 1.00362 0.86846 0.92643 1.20989 0.95183 0.94726 1.07626 1.17968 0.81885 0.88431 0.76553 1.90793 1.71066 1.29539 1.49851 1.45964 1.05631 1.10396 1.74796 1.19323 0.81852 0.85773 1.03911 1.21690 0.97450 1.11430 0.89914 1.23525 0.85275 1.05856 1.02021 1.47930 1.10120 1.41559 1.06056 1.25335 0.84037 1.01688 0.91535 1.22692 0.97151 0.93662 0.82538 1.45652 1.56850 1.08943 1.21026 1.19004 1.22264 1.02161 0.92624 0.89437 1.24889 1.00402 0.96235 0.98251 1.69776 1.48804 1.06352 1.31293 0.86018 0.78992 0.77762 0.82507 1.21268 1.21416 1.20258 1.22935 0.98388 0.92059 0.87396 1.78281 1.15026 1.19668 0.93694 1.75028 0.97057 1.15169 1.26027 1.21640 0.92383 0.99075 0.91369 0.90560 0.90880 0.90951 0.82247 0.82407 0.76179 0.89270 0.89407 0.79149 0.85017 0.93910 0.89413 0.93067 0.91977 0.93950 0.83421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.48 10.03 36.01 0.36 -0.12 16 2 C -0.15 -1.07 5.89 -104.54 -0.62 -1.69 16 3 C 0.12 0.95 10.85 -17.47 -0.19 0.76 16 4 N -0.48 -4.91 10.35 -12.91 -0.13 -5.04 16 5 C 0.13 1.25 10.71 -17.13 -0.18 1.07 16 6 C -0.18 -1.83 5.89 -104.82 -0.62 -2.45 16 7 C 0.57 6.62 7.78 -12.33 -0.10 6.53 16 8 O -0.53 -7.79 16.42 5.31 0.09 -7.70 16 9 N -0.72 -7.59 5.50 -62.43 -0.34 -7.94 16 10 C 0.22 2.46 6.23 -5.19 -0.03 2.43 16 11 C -0.07 -0.89 6.62 -82.77 -0.55 -1.44 16 12 C -0.01 -0.18 10.72 -17.04 -0.18 -0.36 16 13 N -0.26 -4.18 3.54 -56.29 -0.20 -4.38 16 14 C 0.08 1.28 5.14 -70.14 -0.36 0.92 16 15 C 0.17 3.34 6.81 -2.84 -0.02 3.32 16 16 N -0.60 -13.60 3.70 -177.87 -0.66 -14.26 16 17 C -0.23 -5.96 10.70 -15.06 -0.16 -6.12 16 18 H 0.09 2.16 7.83 -52.49 -0.41 1.75 16 19 C 0.00 0.00 5.50 -17.43 -0.10 -0.09 16 20 N -0.92 -24.84 11.51 55.49 0.64 -24.20 16 21 Si 0.92 20.56 29.56 -169.99 -5.02 15.54 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 C 0.12 2.17 8.74 -2.97 -0.03 2.14 16 26 N -0.09 -1.48 13.16 60.35 0.79 -0.69 16 27 N -0.27 -4.29 12.41 33.29 0.41 -3.88 16 28 C -0.02 -0.16 9.39 -38.87 -0.37 -0.53 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.22 8.09 -51.93 -0.42 -0.20 16 31 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 32 H 0.16 0.81 8.06 -52.48 -0.42 0.39 16 33 H 0.16 1.25 6.42 -52.48 -0.34 0.91 16 34 H 0.40 3.76 6.53 -40.82 -0.27 3.49 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.19 2.35 6.74 -52.49 -0.35 2.00 16 38 H 0.13 2.14 8.14 -51.93 -0.42 1.72 16 39 H 0.04 0.84 6.31 -51.93 -0.33 0.52 16 40 H 0.09 1.96 7.37 -51.93 -0.38 1.58 16 41 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.15 1.25 7.74 -52.49 -0.41 0.84 16 LS Contribution 378.81 15.07 5.71 5.71 Total: -1.00 -31.69 378.81 -7.27 -38.96 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.42 Total: 3.51 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -3.13 Total: 4.37 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: 0.51 Total: -60.38 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.09 Total: -7.70 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.69 -7.27 -38.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094282521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.653 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds