Wall clock time and date at job start Wed Apr 1 2020 02:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47051 * 2 1 4 4 C 1.52997 * 109.47045 * 240.00304 * 2 1 3 5 5 N 1.46496 * 109.47246 * 120.00278 * 2 1 3 6 6 N 1.28777 * 125.45216 * 359.97230 * 5 2 1 7 7 N 1.28991 * 108.73505 * 180.02562 * 6 5 2 8 8 C 1.33325 * 107.34824 * 0.02562 * 7 6 5 9 9 C 1.50704 * 126.54825 * 180.02562 * 8 7 6 10 10 N 1.46895 * 109.47030 * 90.02210 * 9 8 7 11 11 C 1.46906 * 110.99789 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47053 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.47237 * 180.02562 * 12 11 10 14 14 C 1.34779 * 120.00447 * 180.02562 * 13 12 11 15 15 O 1.21272 * 119.99366 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.99877 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.46686 * 179.97438 * 16 14 13 18 18 C 1.76198 * 99.99878 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00130 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99971 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99862 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99970 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46892 * 60.00083 * 22 20 18 24 24 H 1.48492 * 109.46927 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47242 * 300.00126 * 22 20 18 26 26 N 1.28891 * 125.44707 * 180.31406 * 5 2 1 27 27 H 1.08998 * 109.46592 * 299.99869 * 1 2 3 28 28 H 1.09005 * 109.46996 * 59.99761 * 1 2 3 29 29 H 1.08991 * 109.46920 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47359 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47301 * 300.00615 * 3 2 1 32 32 H 1.09000 * 109.46789 * 60.00023 * 3 2 1 33 33 H 1.08996 * 109.47410 * 299.99604 * 4 2 1 34 34 H 1.09005 * 109.47277 * 60.00107 * 4 2 1 35 35 H 1.09001 * 109.47230 * 179.97438 * 4 2 1 36 36 H 1.08996 * 109.46908 * 330.02028 * 9 8 7 37 37 H 1.09002 * 109.46622 * 210.02202 * 9 8 7 38 38 H 1.00899 * 111.00672 * 56.04735 * 10 9 8 39 39 H 1.08992 * 109.47459 * 299.99826 * 11 10 9 40 40 H 1.09004 * 109.47040 * 59.99976 * 11 10 9 41 41 H 1.09001 * 109.47142 * 300.00160 * 12 11 10 42 42 H 1.09004 * 109.47006 * 60.00213 * 12 11 10 43 43 H 0.97006 * 119.99755 * 359.97438 * 13 12 11 44 44 H 1.09001 * 109.47332 * 299.99611 * 16 14 13 45 45 H 1.08996 * 109.47524 * 60.00287 * 16 14 13 46 46 H 0.97003 * 119.99847 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 7 1.2784 -1.2172 2.1090 7 7 2.0400 -1.7375 3.0108 8 6 3.3018 -1.5219 2.6380 9 6 4.5422 -1.9500 3.3793 10 7 4.9456 -3.2880 2.9269 11 6 6.1546 -3.7389 3.6291 12 6 6.5427 -5.1332 3.1328 13 7 7.7480 -5.5830 3.8336 14 6 8.2773 -6.7912 3.5566 15 8 7.7559 -7.5057 2.7270 16 6 9.5168 -7.2540 4.2779 17 16 9.9760 -8.9034 3.6907 18 6 11.4122 -9.1882 4.6708 19 1 11.7457 -8.4369 5.3714 20 6 12.1145 -10.3787 4.5434 21 7 11.7078 -11.2946 3.6899 22 14 13.6377 -10.6804 5.5820 23 1 13.2734 -10.6310 7.0208 24 1 14.1998 -12.0165 5.2597 25 1 14.6502 -9.6336 5.2915 26 7 3.2575 -0.8630 1.5062 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6768 -1.7488 -1.2493 34 1 1.6767 -0.2073 -2.1393 35 1 3.1300 -0.7208 -1.2495 36 1 4.3355 -1.9751 4.4492 37 1 5.3465 -1.2415 3.1811 38 1 5.0806 -3.3064 1.9271 39 1 6.9700 -3.0429 3.4324 40 1 5.9596 -3.7763 4.7009 41 1 5.7272 -5.8290 3.3300 42 1 6.7376 -5.0961 2.0610 43 1 8.1656 -5.0109 4.4964 44 1 10.3325 -6.5581 4.0820 45 1 9.3209 -7.2918 5.3495 46 1 12.1989 -12.1264 3.6006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792103.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:57 Heat of formation + Delta-G solvation = 85.930973 kcal Electronic energy + Delta-G solvation = -25718.315547 eV Core-core repulsion = 21807.440241 eV Total energy + Delta-G solvation = -3910.875306 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.158 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.68882 -39.19211 -38.27648 -37.07076 -34.53552 -33.73534 -32.69179 -32.41121 -30.26366 -28.60850 -28.25216 -28.01178 -25.81142 -25.38355 -24.86019 -22.40152 -22.25416 -21.07282 -20.34732 -17.88427 -17.61335 -17.56762 -16.61497 -16.24662 -16.05867 -15.50791 -15.11142 -14.96830 -14.81779 -14.78864 -14.49290 -14.22298 -13.82282 -13.75524 -13.50665 -13.19632 -13.10958 -13.01907 -12.84033 -12.54778 -12.52344 -12.38869 -12.17567 -12.14871 -11.82689 -11.72619 -11.46798 -11.22491 -11.18451 -11.02995 -11.02413 -10.75854 -10.53053 -9.81067 -9.40789 -9.04830 -8.95913 -8.87613 -8.22092 -6.48282 -6.19850 -3.90505 0.90719 1.43683 1.79375 2.97958 3.12242 3.24779 3.26200 3.30039 3.37765 3.59466 3.74226 3.83657 3.94161 4.09849 4.20498 4.22126 4.64456 4.69664 4.73315 4.78122 4.80782 4.89450 4.92378 4.94802 4.97181 5.09943 5.15162 5.20423 5.22603 5.25157 5.31877 5.37886 5.41735 5.58622 5.62638 5.76729 5.87365 5.89629 5.92434 6.15468 6.38724 6.61498 6.83023 7.60734 7.71003 8.07950 8.36564 8.63121 9.25215 10.87516 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.035522 B = 0.001337 C = 0.001321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.055381 B =20930.438667 C =21196.010613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 C -0.158 4.158 4 C -0.159 4.159 5 N -0.130 5.130 6 N -0.063 5.063 7 N -0.269 5.269 8 C 0.167 3.833 9 C 0.161 3.839 10 N -0.679 5.679 11 C 0.052 3.948 12 C 0.123 3.877 13 N -0.739 5.739 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 N -0.303 5.303 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.348 0.652 39 H 0.042 0.958 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.398 0.602 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.442 30.203 -6.736 37.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.097 3.903 3 C -0.217 4.217 4 C -0.218 4.218 5 N -0.044 5.044 6 N -0.055 5.055 7 N -0.140 5.140 8 C -0.116 4.116 9 C 0.029 3.971 10 N -0.312 5.312 11 C -0.078 4.078 12 C -0.002 4.002 13 N -0.394 5.394 14 C 0.318 3.682 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 N -0.154 5.154 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.081 0.919 38 H 0.166 0.834 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.231 0.769 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.388 28.584 -7.933 37.164 hybrid contribution 2.911 1.416 1.576 3.600 sum -19.477 30.000 -6.357 36.328 Atomic orbital electron populations 1.22097 0.90014 1.04749 1.04285 1.21407 0.96508 0.92677 0.79664 1.22233 1.03260 0.92115 1.04056 1.22242 1.03311 1.01236 0.94985 1.50501 1.01097 1.34792 1.18032 1.78969 1.22023 1.09027 0.95529 1.75886 1.00806 1.17619 1.19694 1.25395 0.95739 0.98561 0.91888 1.20038 0.88594 0.89712 0.98730 1.60233 1.35705 1.24301 1.11005 1.22107 0.90240 0.95530 0.99881 1.21113 0.87933 0.94363 0.96785 1.45880 1.29565 1.19424 1.44538 1.20294 0.85072 0.80309 0.82501 1.90709 1.61523 1.53804 1.32954 1.23527 0.97106 1.06499 1.03237 1.85413 1.34254 1.09304 1.54381 1.22834 1.13026 1.05887 1.26744 0.90969 1.24989 0.97961 0.94949 0.95630 1.70011 1.39262 1.07201 1.33813 0.86226 0.81563 0.77586 0.80131 1.19934 1.20814 1.19957 1.74569 1.03551 1.20390 1.16864 0.90619 0.89208 0.90488 0.90441 0.89108 0.91449 0.91232 0.89113 0.90405 0.87500 0.91929 0.83354 0.94009 0.89673 0.90519 0.91780 0.76855 0.89220 0.89145 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.53 7.91 37.16 0.29 -0.23 16 2 C 0.18 0.86 1.30 -131.82 -0.17 0.69 16 3 C -0.16 -0.52 8.66 37.16 0.32 -0.20 16 4 C -0.16 -0.61 8.67 37.16 0.32 -0.29 16 5 N -0.13 -1.13 3.73 0.48 0.00 -1.13 16 6 N -0.06 -0.68 12.24 60.35 0.74 0.06 16 7 N -0.27 -3.23 12.50 32.45 0.41 -2.83 16 8 C 0.17 1.69 7.88 -156.61 -1.23 0.45 16 9 C 0.16 1.23 6.31 -4.98 -0.03 1.20 16 10 N -0.68 -5.83 6.49 -115.06 -0.75 -6.58 16 11 C 0.05 0.41 5.80 -3.82 -0.02 0.39 16 12 C 0.12 1.42 5.93 -4.04 -0.02 1.40 16 13 N -0.74 -9.65 5.56 -60.30 -0.33 -9.98 16 14 C 0.53 9.99 7.85 -10.99 -0.09 9.90 16 15 O -0.52 -11.94 15.86 5.56 0.09 -11.85 16 16 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 22 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 N -0.30 -2.87 11.83 32.47 0.38 -2.49 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.35 2.96 8.72 -39.29 -0.34 2.62 16 39 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.40 3.86 8.47 -40.82 -0.35 3.52 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 45 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 406.05 15.07 6.12 6.12 Total: -1.00 -37.42 406.05 -7.48 -44.90 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -7.42 Total: -0.65 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -0.21 Total: -2.58 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 1.18 Total: -48.49 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.42 -7.48 -44.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792103.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.827 kcal (2) G-P(sol) polarization free energy of solvation -37.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds