Wall clock time and date at job start Wed Apr 1 2020 02:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47101 * 2 1 4 4 C 1.52996 * 109.47124 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47060 * 179.97438 * 4 3 2 6 6 N 1.29018 * 126.43908 * 270.02387 * 5 4 3 7 7 N 1.28741 * 108.81307 * 179.97438 * 6 5 4 8 8 N 1.28844 * 109.39225 * 359.76258 * 7 6 5 9 9 C 1.31067 * 107.99332 * 0.38083 * 8 7 6 10 10 C 1.50697 * 126.66198 * 179.89502 * 9 8 7 11 11 N 1.46905 * 109.47066 * 269.68535 * 10 9 8 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.46916 * 180.02562 * 12 11 10 14 14 N 1.46502 * 109.46871 * 179.97438 * 13 12 11 15 15 C 1.34771 * 119.99820 * 179.97438 * 14 13 12 16 16 O 1.21288 * 120.00364 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99955 * 179.97438 * 15 14 13 18 18 S 1.81007 * 109.47197 * 180.02562 * 17 15 14 19 19 C 1.76204 * 99.99850 * 180.02562 * 18 17 15 20 20 H 1.07987 * 120.00234 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99570 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99636 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00004 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47452 * 89.99830 * 23 21 19 25 25 H 1.48508 * 109.46918 * 209.99576 * 23 21 19 26 26 H 1.48498 * 109.47393 * 329.99523 * 23 21 19 27 27 H 1.08998 * 109.46763 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46981 * 299.99961 * 1 2 3 29 29 H 1.08999 * 109.47191 * 59.99901 * 1 2 3 30 30 H 1.08998 * 109.47239 * 239.99739 * 2 1 3 31 31 H 1.08997 * 109.47647 * 119.99837 * 2 1 3 32 32 H 1.08998 * 109.47287 * 59.99769 * 3 2 1 33 33 H 1.09006 * 109.46558 * 300.00239 * 3 2 1 34 34 H 1.08998 * 109.47542 * 59.99540 * 4 3 2 35 35 H 1.09008 * 109.46828 * 299.99671 * 4 3 2 36 36 H 1.09001 * 109.47558 * 149.68698 * 10 9 8 37 37 H 1.08998 * 109.47216 * 29.68360 * 10 9 8 38 38 H 1.00901 * 110.99869 * 56.04737 * 11 10 9 39 39 H 1.09004 * 109.47031 * 299.99620 * 12 11 10 40 40 H 1.08995 * 109.47111 * 59.99900 * 12 11 10 41 41 H 1.08995 * 109.46615 * 299.99641 * 13 12 11 42 42 H 1.08996 * 109.46939 * 60.00272 * 13 12 11 43 43 H 0.97000 * 119.99841 * 0.02562 * 14 13 12 44 44 H 1.08993 * 109.47735 * 300.00304 * 17 15 14 45 45 H 1.09006 * 109.46731 * 60.00820 * 17 15 14 46 46 H 0.97005 * 119.99839 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8237 -0.0013 6 7 4.3129 3.5461 -1.0395 7 7 4.7216 4.7031 -0.6502 8 7 4.7308 4.7426 0.6376 9 6 4.3251 3.5779 1.0812 10 6 4.1792 3.1655 2.5233 11 7 5.4376 2.5696 2.9918 12 6 5.3322 2.1540 4.3969 13 6 6.6591 1.5403 4.8481 14 7 6.5542 1.1264 6.2495 15 6 7.6090 0.5555 6.8643 16 8 8.6452 0.3848 6.2575 17 6 7.5013 0.1303 8.3060 18 16 9.0710 -0.5960 8.8398 19 6 8.6724 -0.9926 10.5097 20 1 7.6896 -0.7698 10.8978 21 6 9.6218 -1.5913 11.3263 22 7 9.3243 -1.8871 12.5738 23 14 11.3221 -1.9759 10.6551 24 1 12.2191 -0.8149 10.8842 25 1 11.8699 -3.1691 11.3490 26 1 11.2291 -2.2496 9.1985 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9564 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 3.9330 0.9288 -0.8908 35 1 3.9337 0.9286 0.8892 36 1 3.3757 2.4344 2.6127 37 1 3.9436 4.0402 3.1294 38 1 6.2100 3.2052 2.8594 39 1 5.1044 3.0216 5.0163 40 1 4.5367 1.4159 4.4988 41 1 6.8873 0.6729 4.2288 42 1 7.4543 2.2788 4.7463 43 1 5.7254 1.2626 6.7347 44 1 7.2739 0.9982 8.9249 45 1 6.7056 -0.6077 8.4086 46 1 9.9879 -2.3052 13.1447 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799482.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:53 Heat of formation + Delta-G solvation = 65.394261 kcal Electronic energy + Delta-G solvation = -25852.109817 eV Core-core repulsion = 21940.343972 eV Total energy + Delta-G solvation = -3911.765845 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.158 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.61051 -39.41498 -37.70143 -37.23851 -34.86288 -34.76346 -32.94124 -32.46919 -30.62557 -30.10574 -28.51357 -26.09190 -25.63015 -25.37787 -23.58558 -22.64082 -22.22105 -21.89355 -20.57333 -18.12554 -17.89060 -17.47331 -16.86498 -16.46371 -16.42306 -16.26552 -15.72938 -15.30112 -15.03859 -14.83184 -14.63573 -14.47772 -14.07381 -13.78500 -13.65757 -13.33831 -13.30252 -13.19390 -12.82436 -12.66510 -12.42804 -12.37055 -12.17134 -12.04781 -11.86049 -11.69930 -11.53635 -11.39236 -11.29636 -11.21171 -11.03299 -10.65979 -10.58912 -9.89032 -9.62446 -9.29712 -9.10465 -9.02112 -8.53883 -6.95590 -6.31933 -4.04072 0.73890 1.48279 1.78156 2.65515 2.90130 3.06740 3.30856 3.36679 3.48285 3.55424 3.63508 3.83477 3.89987 4.00117 4.20748 4.30471 4.35072 4.42659 4.52068 4.59098 4.65515 4.70321 4.73948 4.78932 4.88350 4.98701 5.00134 5.03789 5.07245 5.14109 5.23561 5.28673 5.39669 5.45998 5.54402 5.59137 5.62741 5.69593 5.71941 5.95464 6.08136 6.38977 6.53722 7.49409 7.91028 8.18453 8.38286 8.40675 9.14244 10.77205 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.017383 B = 0.001592 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.344844 B =17580.661796 C =18512.648803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.137 4.137 4 C 0.109 3.891 5 N -0.292 5.292 6 N -0.092 5.092 7 N -0.076 5.076 8 N -0.299 5.299 9 C 0.186 3.814 10 C 0.141 3.859 11 N -0.684 5.684 12 C 0.050 3.950 13 C 0.123 3.877 14 N -0.737 5.737 15 C 0.532 3.468 16 O -0.517 6.517 17 C -0.124 4.124 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.356 0.644 39 H 0.047 0.953 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.400 0.600 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.211 6.650 -24.558 32.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.176 4.176 4 C -0.012 4.012 5 N -0.094 5.094 6 N -0.078 5.078 7 N -0.070 5.070 8 N -0.149 5.149 9 C -0.092 4.092 10 C 0.009 3.991 11 N -0.318 5.318 12 C -0.079 4.079 13 C -0.002 4.002 14 N -0.393 5.393 15 C 0.317 3.683 16 O -0.391 6.391 17 C -0.275 4.275 18 S 0.085 5.915 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.175 0.825 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.233 0.767 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.226 6.607 -26.683 32.982 hybrid contribution -1.107 0.169 1.920 2.222 sum -19.332 6.776 -24.763 32.139 Atomic orbital electron populations 1.21756 0.94918 1.02301 1.02114 1.21444 0.96763 0.94565 1.03107 1.22051 0.92149 0.99387 1.03967 1.22447 0.96054 0.75461 1.07261 1.48555 1.42261 1.14584 1.04001 1.78898 1.15773 1.00217 1.12904 1.78657 1.14363 1.10359 1.03596 1.75030 1.18233 1.17876 1.03793 1.25840 1.01051 0.88215 0.94132 1.20324 0.94281 1.00110 0.84389 1.60338 1.04848 1.46293 1.20316 1.22130 0.98639 1.00007 0.87138 1.21113 0.96243 1.00373 0.82480 1.45828 1.16289 1.64626 1.12514 1.20281 0.82951 0.76492 0.88540 1.90718 1.28655 1.53214 1.66500 1.23275 1.05380 1.04554 0.94254 1.84824 1.14020 1.78098 1.14592 1.22309 1.03806 1.46871 0.94009 0.89366 1.24713 0.98750 0.93767 0.94066 1.69936 1.35457 1.40477 1.05743 0.86736 0.84127 0.79073 0.81923 1.19194 1.19916 1.15922 0.92081 0.92500 0.92563 0.91147 0.91011 0.90827 0.90473 0.86859 0.86261 0.88000 0.90255 0.82453 0.93519 0.89679 0.90550 0.91525 0.76662 0.88452 0.88394 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.37 9.91 37.16 0.37 0.00 16 2 C -0.12 -0.22 5.93 -26.73 -0.16 -0.38 16 3 C -0.14 -0.34 5.54 -26.73 -0.15 -0.48 16 4 C 0.11 0.36 6.06 -4.05 -0.02 0.33 16 5 N -0.29 -2.09 3.35 -58.27 -0.19 -2.29 16 6 N -0.09 -0.96 13.29 60.35 0.80 -0.16 16 7 N -0.08 -0.94 13.43 60.35 0.81 -0.13 16 8 N -0.30 -3.29 12.36 32.70 0.40 -2.89 16 9 C 0.19 1.41 7.65 -155.43 -1.19 0.23 16 10 C 0.14 0.61 5.82 -4.97 -0.03 0.58 16 11 N -0.68 -3.61 6.49 -115.05 -0.75 -4.36 16 12 C 0.05 0.25 5.80 -3.82 -0.02 0.23 16 13 C 0.12 1.10 5.93 -4.04 -0.02 1.08 16 14 N -0.74 -7.94 5.56 -60.29 -0.33 -8.28 16 15 C 0.53 8.79 7.85 -10.99 -0.09 8.70 16 16 O -0.52 -10.74 15.86 5.55 0.09 -10.65 16 17 C -0.12 -2.26 6.16 36.01 0.22 -2.04 16 18 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 19 C -0.52 -14.76 10.04 30.94 0.31 -14.45 16 20 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 21 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 22 N -0.88 -26.17 13.97 55.49 0.78 -25.40 16 23 Si 0.86 21.51 27.74 -169.99 -4.71 16.79 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 27 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.07 0.10 8.14 -51.93 -0.42 -0.33 16 32 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.12 0.23 7.75 -51.92 -0.40 -0.17 16 36 H 0.10 0.20 7.81 -51.93 -0.41 -0.20 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.36 2.21 8.72 -39.29 -0.34 1.87 16 39 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.40 3.02 8.47 -40.82 -0.35 2.67 16 44 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 45 H 0.10 1.64 8.14 -51.91 -0.42 1.22 16 46 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 404.96 15.07 6.10 6.10 Total: -1.00 -36.84 404.96 -7.29 -44.14 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -7.42 Total: -3.84 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -0.88 Total: -3.54 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 1.52 Total: -43.50 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.79 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.84 -7.29 -44.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799482.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.531 kcal (2) G-P(sol) polarization free energy of solvation -36.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds