Wall clock time and date at job start Wed Apr 1 2020 00:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.09000 * 109.47046 * 294.99604 * 11 10 9 13 13 N 1.46494 * 109.47509 * 54.99655 * 11 10 9 14 14 C 1.34779 * 120.00531 * 205.00222 * 13 11 10 15 15 O 1.21512 * 119.99668 * 0.02562 * 14 13 11 16 16 C 1.48155 * 120.00123 * 179.97438 * 14 13 11 17 17 C 1.39939 * 120.89363 * 359.97438 * 16 14 13 18 18 C 1.38069 * 119.13392 * 179.97438 * 17 16 14 19 19 N 1.31837 * 120.98125 * 359.97438 * 18 17 16 20 20 C 1.32235 * 121.97421 * 0.02562 * 19 18 17 21 21 N 1.39859 * 119.62414 * 180.02562 * 20 19 18 22 22 C 1.34811 * 126.84644 * 0.02562 * 21 20 19 23 23 N 1.30810 * 108.01981 * 179.97438 * 22 21 20 24 24 C 1.33291 * 109.84966 * 0.02562 * 23 22 21 25 25 N 1.30713 * 109.01326 * 359.74933 * 24 23 22 26 26 C 1.38903 * 120.74927 * 359.72649 * 20 19 18 27 27 C 1.53004 * 109.47336 * 175.00083 * 11 10 9 28 28 C 1.53005 * 117.49613 * 248.74612 * 27 11 10 29 29 C 1.52997 * 117.49957 * 180.08734 * 27 11 10 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 33 33 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 34 34 H 0.97009 * 119.99912 * 24.99842 * 13 11 10 35 35 H 1.08001 * 120.43511 * 359.97438 * 17 16 14 36 36 H 1.07994 * 119.50316 * 180.02562 * 18 17 16 37 37 H 1.08002 * 125.98758 * 359.92362 * 22 21 20 38 38 H 1.07999 * 125.49559 * 180.02562 * 24 23 22 39 39 H 1.08004 * 120.52928 * 180.29977 * 26 20 19 40 40 H 1.08997 * 115.54876 * 34.41242 * 27 11 10 41 41 H 1.09005 * 117.49448 * 359.97438 * 28 27 11 42 42 H 1.08994 * 117.49848 * 145.02087 * 28 27 11 43 43 H 1.08997 * 117.49655 * 214.97733 * 29 27 11 44 44 H 1.09004 * 117.50130 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 1 0.4971 -4.8089 0.9438 13 7 0.1446 -4.6818 -1.1197 14 6 -1.0799 -5.2423 -1.0660 15 8 -1.4218 -5.8616 -0.0781 16 6 -2.0096 -5.1022 -2.2111 17 6 -1.6359 -4.3917 -3.3573 18 6 -2.5307 -4.2844 -4.4032 19 7 -3.7243 -4.8402 -4.3349 20 6 -4.1201 -5.5206 -3.2724 21 7 -5.3972 -6.0904 -3.2526 22 6 -6.3238 -6.0317 -4.2300 23 7 -7.3804 -6.6885 -3.8259 24 6 -7.1694 -7.1775 -2.6040 25 7 -5.9681 -6.8423 -2.2128 26 6 -3.2797 -5.6809 -2.1781 27 6 1.8245 -6.1418 -0.1060 28 6 1.6669 -6.9333 -1.4059 29 6 1.0016 -7.4316 -0.1205 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6849 -3.7190 -0.8822 33 1 2.6842 -3.7101 0.8977 34 1 0.4173 -4.1869 -1.9082 35 1 -0.6602 -3.9332 -3.4229 36 1 -2.2484 -3.7378 -5.2908 37 1 -6.2135 -5.5295 -5.1798 38 1 -7.8753 -7.7609 -2.0315 39 1 -3.6049 -6.2414 -1.3140 40 1 2.7967 -6.1706 0.3860 41 1 1.0208 -6.5122 -2.1763 42 1 2.5352 -7.4831 -1.7688 43 1 1.4326 -8.3089 0.3617 44 1 -0.0818 -7.3383 -0.0450 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716632277.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:21 Heat of formation + Delta-G solvation = 153.915543 kcal Electronic energy + Delta-G solvation = -29034.645000 eV Core-core repulsion = 24991.273774 eV Total energy + Delta-G solvation = -4043.371226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.62936 -40.91570 -39.69808 -37.25511 -35.05068 -34.67521 -33.55532 -32.90336 -31.59219 -31.23012 -30.21962 -28.33433 -25.42131 -24.62266 -24.05039 -22.78678 -22.34302 -21.88073 -21.57571 -20.93122 -19.84928 -18.97788 -17.58368 -17.26789 -16.53461 -16.33818 -16.08934 -15.89504 -15.77665 -15.43885 -14.87311 -14.56985 -14.54340 -14.34181 -14.16257 -13.83735 -13.54253 -13.34083 -12.96724 -12.52473 -12.38598 -12.20479 -11.77150 -11.47414 -11.37619 -11.25683 -10.97994 -10.87547 -10.53764 -10.45417 -10.30050 -10.22425 -10.18931 -10.17376 -9.89048 -9.81491 -9.67086 -9.00737 -8.98493 -8.86299 -7.06286 -5.86512 -3.17158 0.14072 0.50771 1.52412 1.60801 2.57880 2.79019 3.02876 3.37044 3.42281 3.43197 3.54647 3.84481 3.95098 4.03565 4.13858 4.34912 4.48338 4.58270 4.63723 4.77345 4.82915 4.93828 5.08028 5.10273 5.33087 5.35263 5.45294 5.48234 5.64015 5.69606 5.75251 5.79951 5.88751 5.91340 5.96124 6.05474 6.12017 6.20932 6.34368 6.41645 6.55219 6.56180 6.74771 7.20762 7.54957 7.59816 7.71133 8.18848 8.30888 9.42868 9.97004 10.32266 11.35410 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.010650 B = 0.002997 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.538419 B = 9339.786546 C =11063.048282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.147 3.853 11 C 0.168 3.832 12 H 0.095 0.905 13 N -0.695 5.695 14 C 0.558 3.442 15 O -0.524 6.524 16 C -0.058 4.058 17 C -0.139 4.139 18 C 0.134 3.866 19 N -0.489 5.489 20 C 0.352 3.648 21 N -0.331 5.331 22 C 0.291 3.709 23 N -0.542 5.542 24 C 0.212 3.788 25 N -0.305 5.305 26 C -0.099 4.099 27 C -0.160 4.160 28 C -0.178 4.178 29 C -0.187 4.187 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.028 0.972 33 H 0.037 0.963 34 H 0.406 0.594 35 H 0.153 0.847 36 H 0.179 0.821 37 H 0.228 0.772 38 H 0.227 0.773 39 H 0.161 0.839 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.475 -14.612 -9.976 18.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.019 3.981 11 C 0.064 3.936 12 H 0.113 0.887 13 N -0.346 5.346 14 C 0.344 3.656 15 O -0.401 6.401 16 C -0.069 4.069 17 C -0.160 4.160 18 C -0.024 4.024 19 N -0.202 5.202 20 C 0.124 3.876 21 N -0.116 5.116 22 C -0.005 4.005 23 N -0.268 5.268 24 C -0.091 4.091 25 N -0.130 5.130 26 C -0.122 4.122 27 C -0.180 4.180 28 C -0.215 4.215 29 C -0.224 4.224 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.242 0.758 35 H 0.171 0.829 36 H 0.196 0.804 37 H 0.244 0.756 38 H 0.243 0.757 39 H 0.179 0.821 40 H 0.130 0.870 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.130 -15.077 -9.419 18.805 hybrid contribution 0.979 1.354 0.158 1.678 sum -5.152 -13.723 -9.260 17.339 Atomic orbital electron populations 1.69654 1.05108 1.25916 1.57157 1.24752 0.95507 0.97738 1.02653 0.86264 0.78525 0.83447 0.77880 1.21227 1.21687 1.21225 1.19152 0.91010 0.83963 1.43482 0.91125 1.42348 1.05943 0.99721 1.89700 1.20926 0.92969 0.84940 0.99220 1.20853 0.90103 0.93165 0.89520 0.88748 1.45875 1.13991 1.53820 1.20941 1.17936 0.81750 0.79667 0.86258 1.90731 1.75823 1.41214 1.32331 1.20359 0.94460 0.97133 0.94984 1.22525 1.02283 0.98019 0.93223 1.22526 0.86369 0.94811 0.98683 1.66676 1.19235 1.09521 1.24806 1.17477 0.83329 0.95048 0.91725 1.47480 1.11261 1.39237 1.13650 1.26418 0.83450 0.94958 0.95709 1.70720 1.26040 1.16985 1.13044 1.26294 0.93037 0.98011 0.91766 1.78267 1.11501 1.13905 1.09316 1.21718 0.92149 0.99460 0.98886 1.22695 1.00912 0.92231 1.02120 1.22891 1.02999 1.04024 0.91570 1.23340 1.01448 0.96910 1.00680 0.93377 0.78058 0.95430 0.94560 0.75773 0.82920 0.80438 0.75577 0.75723 0.82094 0.86998 0.89213 0.89336 0.89561 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.96 13.06 55.49 0.72 -26.24 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 21.52 29.55 -169.99 -5.02 16.49 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.43 9.99 -15.06 -0.15 -6.58 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.73 -17.00 5.43 -59.91 -0.33 -17.33 16 10 C 0.15 2.65 5.80 -4.04 -0.02 2.62 16 11 C 0.17 2.60 2.59 -67.93 -0.18 2.42 16 12 H 0.09 1.69 7.58 -51.93 -0.39 1.29 16 13 N -0.70 -9.92 3.01 -54.66 -0.16 -10.08 16 14 C 0.56 8.42 6.63 -12.19 -0.08 8.34 16 15 O -0.52 -9.29 13.47 5.35 0.07 -9.22 16 16 C -0.06 -0.75 5.91 -104.68 -0.62 -1.37 16 17 C -0.14 -1.44 9.61 -39.01 -0.37 -1.81 16 18 C 0.13 1.24 11.17 -17.61 -0.20 1.04 16 19 N -0.49 -5.38 9.87 -12.33 -0.12 -5.50 16 20 C 0.35 4.43 7.56 -154.40 -1.17 3.26 16 21 N -0.33 -4.11 3.81 -13.36 -0.05 -4.16 16 22 C 0.29 3.06 12.26 -90.33 -1.11 1.95 16 23 N -0.54 -6.08 11.19 -15.73 -0.18 -6.26 16 24 C 0.21 2.20 13.03 -91.77 -1.20 1.00 16 25 N -0.30 -3.89 12.02 29.30 0.35 -3.53 16 26 C -0.10 -1.34 9.29 -38.82 -0.36 -1.70 16 27 C -0.16 -2.08 5.71 -90.62 -0.52 -2.60 16 28 C -0.18 -2.08 9.74 -26.69 -0.26 -2.34 16 29 C -0.19 -2.43 9.82 -26.69 -0.26 -2.69 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.39 9.60 7.33 -40.82 -0.30 9.30 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.41 5.30 6.74 -40.82 -0.28 5.02 16 35 H 0.15 1.31 6.53 -52.49 -0.34 0.96 16 36 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.23 1.64 8.06 -52.49 -0.42 1.21 16 38 H 0.23 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.16 2.35 7.41 -52.48 -0.39 1.96 16 40 H 0.11 1.34 8.11 -51.93 -0.42 0.92 16 41 H 0.09 1.05 6.67 -51.93 -0.35 0.70 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.11 1.75 5.01 -51.93 -0.26 1.49 16 LS Contribution 375.60 15.07 5.66 5.66 Total: -1.00 -33.18 375.60 -10.87 -44.05 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -5.23 Total: 14.94 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -6.59 Total: 1.17 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: 0.24 Total: -73.10 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.07 Total: -9.22 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.18 -10.87 -44.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716632277.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.968 kcal (2) G-P(sol) polarization free energy of solvation -33.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds