Wall clock time and date at job start Wed Apr 1 2020 00:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.09000 * 109.47046 * 294.99604 * 11 10 9 13 13 N 1.46494 * 109.47509 * 54.99655 * 11 10 9 14 14 C 1.34779 * 120.00531 * 205.00222 * 13 11 10 15 15 O 1.21512 * 119.99668 * 0.02562 * 14 13 11 16 16 C 1.48155 * 120.00123 * 179.97438 * 14 13 11 17 17 C 1.39939 * 120.89363 * 359.97438 * 16 14 13 18 18 C 1.38069 * 119.13392 * 179.97438 * 17 16 14 19 19 N 1.31837 * 120.98125 * 359.97438 * 18 17 16 20 20 C 1.32235 * 121.97421 * 0.02562 * 19 18 17 21 21 N 1.39859 * 119.62414 * 180.02562 * 20 19 18 22 22 C 1.34811 * 126.84644 * 0.02562 * 21 20 19 23 23 N 1.30810 * 108.01981 * 179.97438 * 22 21 20 24 24 C 1.33291 * 109.84966 * 0.02562 * 23 22 21 25 25 N 1.30713 * 109.01326 * 359.74933 * 24 23 22 26 26 C 1.38903 * 120.74927 * 359.72649 * 20 19 18 27 27 C 1.53004 * 109.47336 * 175.00083 * 11 10 9 28 28 C 1.53005 * 117.49613 * 248.74612 * 27 11 10 29 29 C 1.52997 * 117.49957 * 180.08734 * 27 11 10 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 33 33 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 34 34 H 0.97009 * 119.99912 * 24.99842 * 13 11 10 35 35 H 1.08001 * 120.43511 * 359.97438 * 17 16 14 36 36 H 1.07994 * 119.50316 * 180.02562 * 18 17 16 37 37 H 1.08002 * 125.98758 * 359.92362 * 22 21 20 38 38 H 1.07999 * 125.49559 * 180.02562 * 24 23 22 39 39 H 1.08004 * 120.52928 * 180.29977 * 26 20 19 40 40 H 1.08997 * 115.54876 * 34.41242 * 27 11 10 41 41 H 1.09005 * 117.49448 * 359.97438 * 28 27 11 42 42 H 1.08994 * 117.49848 * 145.02087 * 28 27 11 43 43 H 1.08997 * 117.49655 * 214.97733 * 29 27 11 44 44 H 1.09004 * 117.50130 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 1 0.4971 -4.8089 0.9438 13 7 0.1446 -4.6818 -1.1197 14 6 -1.0799 -5.2423 -1.0660 15 8 -1.4218 -5.8616 -0.0781 16 6 -2.0096 -5.1022 -2.2111 17 6 -1.6359 -4.3917 -3.3573 18 6 -2.5307 -4.2844 -4.4032 19 7 -3.7243 -4.8402 -4.3349 20 6 -4.1201 -5.5206 -3.2724 21 7 -5.3972 -6.0904 -3.2526 22 6 -6.3238 -6.0317 -4.2300 23 7 -7.3804 -6.6885 -3.8259 24 6 -7.1694 -7.1775 -2.6040 25 7 -5.9681 -6.8423 -2.2128 26 6 -3.2797 -5.6809 -2.1781 27 6 1.8245 -6.1418 -0.1060 28 6 1.6669 -6.9333 -1.4059 29 6 1.0016 -7.4316 -0.1205 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6849 -3.7190 -0.8822 33 1 2.6842 -3.7101 0.8977 34 1 0.4173 -4.1869 -1.9082 35 1 -0.6602 -3.9332 -3.4229 36 1 -2.2484 -3.7378 -5.2908 37 1 -6.2135 -5.5295 -5.1798 38 1 -7.8753 -7.7609 -2.0315 39 1 -3.6049 -6.2414 -1.3140 40 1 2.7967 -6.1706 0.3860 41 1 1.0208 -6.5122 -2.1763 42 1 2.5352 -7.4831 -1.7688 43 1 1.4326 -8.3089 0.3617 44 1 -0.0818 -7.3383 -0.0450 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716632277.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:19 Heat of formation + Delta-G solvation = 135.277168 kcal Electronic energy + Delta-G solvation = -29035.453221 eV Core-core repulsion = 24991.273774 eV Total energy + Delta-G solvation = -4044.179446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.47491 -41.94192 -40.75278 -38.44533 -36.56360 -35.64345 -34.87167 -33.97266 -32.95879 -32.42519 -31.14312 -29.84501 -26.50549 -25.89178 -25.36085 -23.72896 -23.47895 -22.99312 -22.68398 -21.93823 -21.01904 -20.02501 -19.16776 -18.46008 -17.58283 -17.36891 -17.14734 -16.94489 -16.80104 -16.58970 -16.26720 -15.74713 -15.40994 -15.31069 -15.18164 -15.08127 -14.98872 -14.87541 -14.41172 -13.67832 -13.37452 -13.28899 -13.12217 -12.85487 -12.73373 -12.68025 -12.36684 -12.14553 -12.12301 -11.83321 -11.59442 -11.34973 -11.22204 -11.17173 -11.08425 -10.96502 -10.88273 -10.81094 -10.09455 -9.85251 -9.00132 -7.92815 -5.22293 -0.76017 -0.43215 0.68997 0.76990 1.50511 1.52386 1.58339 1.67089 1.79449 1.90277 2.56950 2.59893 2.91772 3.04572 3.21323 3.34398 3.38573 3.42367 3.61189 3.69013 3.76414 3.91397 3.98739 4.07817 4.17021 4.17942 4.37600 4.47597 4.49326 4.51386 4.62492 4.79440 4.81931 4.88384 4.98067 5.04644 5.12500 5.12733 5.24851 5.28462 5.35871 5.46298 5.53718 5.72042 6.27190 6.34770 6.39308 6.87366 7.02577 7.35475 8.07852 8.31608 9.29539 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.010650 B = 0.002997 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.538419 B = 9339.786546 C =11063.048282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.970 3.030 4 H -0.273 1.273 5 H -0.301 1.301 6 H -0.283 1.283 7 C -0.241 4.241 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.150 3.850 11 C 0.178 3.822 12 H 0.063 0.937 13 N -0.688 5.688 14 C 0.557 3.443 15 O -0.558 6.558 16 C -0.071 4.071 17 C -0.132 4.132 18 C 0.146 3.854 19 N -0.485 5.485 20 C 0.345 3.655 21 N -0.343 5.343 22 C 0.295 3.705 23 N -0.557 5.557 24 C 0.217 3.783 25 N -0.344 5.344 26 C -0.117 4.117 27 C -0.163 4.163 28 C -0.160 4.160 29 C -0.195 4.195 30 H 0.249 0.751 31 H 0.374 0.626 32 H 0.047 0.953 33 H 0.039 0.961 34 H 0.413 0.587 35 H 0.174 0.826 36 H 0.223 0.777 37 H 0.257 0.743 38 H 0.260 0.740 39 H 0.138 0.862 40 H 0.128 0.872 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.000 -14.585 -12.206 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.263 4.263 3 Si 0.800 3.200 4 H -0.199 1.199 5 H -0.228 1.228 6 H -0.209 1.209 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.024 3.976 11 C 0.073 3.927 12 H 0.081 0.919 13 N -0.339 5.339 14 C 0.344 3.656 15 O -0.438 6.438 16 C -0.083 4.083 17 C -0.153 4.153 18 C -0.012 4.012 19 N -0.199 5.199 20 C 0.118 3.882 21 N -0.129 5.129 22 C 0.000 4.000 23 N -0.283 5.283 24 C -0.085 4.085 25 N -0.169 5.169 26 C -0.141 4.141 27 C -0.183 4.183 28 C -0.197 4.197 29 C -0.232 4.232 30 H 0.058 0.942 31 H 0.206 0.794 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.251 0.749 35 H 0.191 0.809 36 H 0.239 0.761 37 H 0.272 0.728 38 H 0.276 0.724 39 H 0.156 0.844 40 H 0.146 0.854 41 H 0.108 0.892 42 H 0.130 0.870 43 H 0.120 0.880 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.616 -15.084 -11.662 19.617 hybrid contribution 0.523 1.285 0.840 1.622 sum -4.093 -13.799 -10.822 18.008 Atomic orbital electron populations 1.69815 1.06561 1.25957 1.59406 1.25496 0.96227 1.00893 1.03728 0.85267 0.77151 0.79441 0.78185 1.19918 1.22751 1.20947 1.19566 0.91584 0.84976 1.41184 0.90224 1.42516 1.05613 1.00881 1.89585 1.21047 0.93223 0.83512 0.99850 1.20584 0.89548 0.93801 0.88775 0.91881 1.45762 1.13706 1.53678 1.20766 1.18258 0.81963 0.78964 0.86458 1.90715 1.76449 1.42747 1.33898 1.20228 0.93992 0.98664 0.95367 1.22795 1.03370 0.96881 0.92270 1.23302 0.85157 0.93365 0.99392 1.66833 1.19939 1.09266 1.23817 1.17535 0.83449 0.95388 0.91838 1.47539 1.11524 1.39731 1.14100 1.27057 0.82741 0.94148 0.96081 1.70774 1.26433 1.17644 1.13478 1.27032 0.92757 0.97068 0.91629 1.78250 1.12745 1.15341 1.10614 1.21552 0.92993 1.00554 0.98973 1.22616 1.01116 0.90693 1.03847 1.22984 1.03243 1.02720 0.90722 1.23278 1.00121 0.97438 1.02365 0.94222 0.79401 0.93492 0.94349 0.74897 0.80908 0.76060 0.72766 0.72403 0.84375 0.85388 0.89235 0.86994 0.88027 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.64 13.06 21.65 0.28 -56.35 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 3 Si 0.97 43.93 29.55 68.60 2.03 45.96 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.24 -12.45 9.99 84.03 0.84 -11.61 16 8 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.74 -34.25 5.43 -343.46 -1.87 -36.11 16 10 C 0.15 5.23 5.80 86.38 0.50 5.73 16 11 C 0.18 5.48 2.59 44.99 0.12 5.60 16 12 H 0.06 2.36 7.58 -2.39 -0.02 2.34 16 13 N -0.69 -19.59 3.01 -445.12 -1.34 -20.93 16 14 C 0.56 17.40 6.63 86.88 0.58 17.97 16 15 O -0.56 -21.18 13.47 -3.75 -0.05 -21.23 16 16 C -0.07 -1.88 5.91 -19.90 -0.12 -2.00 16 17 C -0.13 -2.51 9.61 22.64 0.22 -2.29 16 18 C 0.15 2.29 11.17 84.65 0.95 3.24 16 19 N -0.48 -9.85 9.87 -192.93 -1.90 -11.76 16 20 C 0.34 8.71 7.56 132.76 1.00 9.71 16 21 N -0.34 -8.60 3.81 -196.17 -0.75 -9.34 16 22 C 0.29 5.96 12.26 180.25 2.21 8.17 16 23 N -0.56 -12.07 11.19 -203.69 -2.28 -14.35 16 24 C 0.22 4.45 13.03 180.75 2.35 6.81 16 25 N -0.34 -9.06 12.02 -61.22 -0.74 -9.79 16 26 C -0.12 -3.33 9.29 22.76 0.21 -3.12 16 27 C -0.16 -4.04 5.71 -10.79 -0.06 -4.10 16 28 C -0.16 -3.41 9.74 30.62 0.30 -3.11 16 29 C -0.20 -4.96 9.82 30.62 0.30 -4.65 16 30 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.37 18.88 7.33 -92.71 -0.68 18.20 16 32 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.41 10.35 6.74 -92.70 -0.62 9.72 16 35 H 0.17 2.52 6.53 -2.91 -0.02 2.50 16 36 H 0.22 1.48 8.06 -2.91 -0.02 1.45 16 37 H 0.26 3.21 8.06 -2.91 -0.02 3.19 16 38 H 0.26 2.91 8.06 -2.91 -0.02 2.88 16 39 H 0.14 4.48 7.41 -2.91 -0.02 4.46 16 40 H 0.13 2.77 8.11 -2.39 -0.02 2.75 16 41 H 0.09 1.92 6.67 -2.38 -0.02 1.91 16 42 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.10 2.23 8.14 -2.39 -0.02 2.22 16 44 H 0.09 2.81 5.01 -2.38 -0.01 2.80 16 Total: -1.00 -73.51 375.60 3.02 -70.49 By element: Atomic # 1 Polarization: 40.69 SS G_CDS: -0.23 Total: 40.46 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: 9.86 Total: 22.96 kcal Atomic # 7 Polarization: -150.05 SS G_CDS: -8.59 Total: -158.64 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.05 Total: -21.23 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -73.51 3.02 -70.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716632277.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.769 kcal (2) G-P(sol) polarization free energy of solvation -73.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds