Wall clock time and date at job start Wed Apr 1 2020 00:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99967 * 2 1 4 4 H 1.48509 * 109.46989 * 270.00118 * 3 2 1 5 5 H 1.48499 * 109.47471 * 29.99779 * 3 2 1 6 6 H 1.48493 * 109.47431 * 150.00220 * 3 2 1 7 7 C 1.38808 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00039 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.46509 * 119.99741 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46666 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47191 * 65.00217 * 11 10 9 13 13 N 1.46496 * 109.47292 * 304.99530 * 11 10 9 14 14 C 1.34777 * 119.99989 * 154.99786 * 13 11 10 15 15 O 1.21512 * 119.99749 * 0.02562 * 14 13 11 16 16 C 1.48158 * 120.00124 * 179.97438 * 14 13 11 17 17 C 1.39938 * 120.89187 * 0.02562 * 16 14 13 18 18 C 1.38065 * 119.13385 * 180.02562 * 17 16 14 19 19 N 1.31832 * 120.98080 * 0.02562 * 18 17 16 20 20 C 1.32228 * 121.97678 * 359.97438 * 19 18 17 21 21 N 1.39868 * 119.62378 * 180.02562 * 20 19 18 22 22 C 1.34796 * 126.84844 * 359.97438 * 21 20 19 23 23 N 1.30822 * 108.02214 * 179.97438 * 22 21 20 24 24 C 1.33290 * 109.84310 * 359.97438 * 23 22 21 25 25 N 1.30719 * 109.01672 * 359.73890 * 24 23 22 26 26 C 1.38898 * 120.75090 * 0.02562 * 20 19 18 27 27 C 1.53001 * 109.46861 * 184.99988 * 11 10 9 28 28 C 1.53001 * 117.49781 * 248.74828 * 27 11 10 29 29 C 1.52997 * 117.50070 * 180.08567 * 27 11 10 30 30 H 0.97003 * 119.99925 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00144 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.46951 * 60.00233 * 10 9 7 33 33 H 1.08993 * 109.46780 * 299.99923 * 10 9 7 34 34 H 0.97001 * 120.00562 * 335.00473 * 13 11 10 35 35 H 1.08001 * 120.43688 * 0.04422 * 17 16 14 36 36 H 1.08005 * 119.50418 * 179.72510 * 18 17 16 37 37 H 1.08004 * 125.99267 * 359.95912 * 22 21 20 38 38 H 1.08006 * 125.49016 * 180.02562 * 24 23 22 39 39 H 1.08004 * 120.53167 * 180.02562 * 26 20 19 40 40 H 1.09002 * 115.54811 * 34.41547 * 27 11 10 41 41 H 1.08999 * 117.49929 * 0.02562 * 28 27 11 42 42 H 1.08998 * 117.50162 * 145.01874 * 28 27 11 43 43 H 1.08994 * 117.50314 * 214.97427 * 29 27 11 44 44 H 1.09004 * 117.49852 * 0.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4002 5 1 1.4477 2.6528 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.4974 -4.8138 -0.9310 13 7 0.1449 -4.6759 1.1319 14 6 -1.0796 -5.2366 1.0811 15 8 -1.4211 -5.8619 0.0968 16 6 -2.0088 -5.0917 2.2260 17 6 -1.6346 -4.3761 3.3689 18 6 -2.5290 -4.2643 4.4147 19 7 -3.7225 -4.8204 4.3493 20 6 -4.1188 -5.5054 3.2900 21 7 -5.3964 -6.0745 3.2729 22 6 -6.3229 -6.0106 4.2499 23 7 -7.3805 -6.6676 3.8483 24 6 -7.1699 -7.1618 2.6285 25 7 -5.9722 -6.8205 2.2315 26 6 -3.2808 -5.6662 2.1940 27 6 1.8248 -6.1411 0.1258 28 6 1.8339 -7.0695 -1.0903 29 6 1.0023 -7.4311 0.1430 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0002 32 1 2.6848 -3.7145 0.8894 33 1 2.6848 -3.7144 -0.8905 34 1 0.4176 -4.1769 1.9178 35 1 -0.6591 -3.9171 3.4320 36 1 -2.2448 -3.7172 5.3015 37 1 -6.2117 -5.5056 5.1981 38 1 -7.8769 -7.7459 2.0579 39 1 -3.6083 -6.2260 1.3304 40 1 2.7238 -6.1092 0.7414 41 1 1.2981 -6.7387 -1.9800 42 1 2.7386 -7.6487 -1.2746 43 1 1.3603 -8.2480 0.7695 44 1 -0.0809 -7.3384 0.0644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716632278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:29 Heat of formation + Delta-G solvation = 149.411396 kcal Electronic energy + Delta-G solvation = -28851.126754 eV Core-core repulsion = 24807.560214 eV Total energy + Delta-G solvation = -4043.566540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.62134 -40.84415 -39.55690 -37.28305 -35.17172 -34.65528 -33.61474 -32.92975 -31.58117 -31.18807 -30.21312 -28.22896 -25.40625 -24.61911 -23.98569 -22.77695 -22.20537 -21.86340 -21.59117 -20.85945 -20.19217 -18.95144 -17.58042 -17.18221 -16.66196 -16.31800 -15.96005 -15.79907 -15.57541 -15.33166 -15.04252 -14.67132 -14.46469 -14.32728 -14.24517 -13.86032 -13.59787 -13.25834 -12.96785 -12.51871 -12.36494 -12.22783 -11.80522 -11.39154 -11.24821 -11.15107 -10.98208 -10.88939 -10.52073 -10.42747 -10.26014 -10.22224 -10.19511 -10.14182 -10.03247 -9.81736 -9.73335 -9.01016 -8.97333 -8.83923 -7.06548 -5.86849 -3.17503 0.15626 0.52385 1.53367 1.61779 2.58517 2.81833 3.01393 3.36683 3.42181 3.43749 3.56280 3.84042 3.97052 4.06413 4.16796 4.40228 4.47368 4.60000 4.65951 4.78950 4.80640 4.95063 5.08051 5.17783 5.30313 5.35338 5.43942 5.47098 5.66680 5.71596 5.77621 5.79494 5.81356 5.95137 6.00163 6.06346 6.12237 6.27383 6.33262 6.42221 6.54424 6.56471 6.76142 7.21997 7.58347 7.60156 7.71859 8.21983 8.30461 9.42580 9.96613 10.31952 11.35132 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.010089 B = 0.002995 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.627628 B = 9347.389033 C =11296.683075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.091 0.909 13 N -0.694 5.694 14 C 0.560 3.440 15 O -0.527 6.527 16 C -0.057 4.057 17 C -0.139 4.139 18 C 0.133 3.867 19 N -0.489 5.489 20 C 0.351 3.649 21 N -0.330 5.330 22 C 0.290 3.710 23 N -0.542 5.542 24 C 0.211 3.789 25 N -0.305 5.305 26 C -0.099 4.099 27 C -0.164 4.164 28 C -0.169 4.169 29 C -0.186 4.186 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.026 0.974 33 H 0.038 0.962 34 H 0.405 0.595 35 H 0.153 0.847 36 H 0.179 0.821 37 H 0.228 0.772 38 H 0.227 0.773 39 H 0.161 0.839 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.366 -14.682 9.500 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.064 3.936 12 H 0.109 0.891 13 N -0.344 5.344 14 C 0.346 3.654 15 O -0.405 6.405 16 C -0.068 4.068 17 C -0.160 4.160 18 C -0.024 4.024 19 N -0.203 5.203 20 C 0.124 3.876 21 N -0.116 5.116 22 C -0.006 4.006 23 N -0.268 5.268 24 C -0.091 4.091 25 N -0.130 5.130 26 C -0.122 4.122 27 C -0.184 4.184 28 C -0.207 4.207 29 C -0.223 4.223 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.241 0.759 35 H 0.171 0.829 36 H 0.195 0.805 37 H 0.244 0.756 38 H 0.243 0.757 39 H 0.179 0.821 40 H 0.123 0.877 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.015 -15.139 8.955 18.590 hybrid contribution 0.970 1.357 -0.139 1.674 sum -5.045 -13.783 8.817 17.121 Atomic orbital electron populations 1.69664 1.05110 1.25799 1.57238 1.24754 0.95508 0.97743 1.02671 0.86193 0.78621 0.83736 0.77608 1.21670 1.21752 1.20725 1.19194 0.91045 0.83945 1.43360 0.91065 1.42356 1.05951 0.99730 1.89700 1.20934 0.92942 0.84930 0.99226 1.20901 0.90081 0.93113 0.89508 0.89083 1.45850 1.13949 1.53504 1.21076 1.17907 0.81773 0.79604 0.86153 1.90719 1.75980 1.41181 1.32643 1.20361 0.94395 0.97063 0.95016 1.22527 1.02272 0.97925 0.93249 1.22524 0.86380 0.94874 0.98660 1.66666 1.19227 1.09447 1.24934 1.17475 0.83340 0.95069 0.91764 1.47478 1.11167 1.39427 1.13523 1.26415 0.83370 0.95024 0.95744 1.70726 1.25968 1.16855 1.13261 1.26294 0.93145 0.97981 0.91716 1.78270 1.11506 1.14102 1.09120 1.21717 0.92165 0.99531 0.98821 1.22647 1.01536 0.91228 1.02975 1.22903 1.02063 1.02950 0.92742 1.23265 1.00581 0.97457 1.00982 0.93425 0.78058 0.95585 0.94408 0.75890 0.82897 0.80452 0.75582 0.75733 0.82105 0.87697 0.88648 0.89089 0.89780 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.98 13.06 55.49 0.72 -26.25 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.24 -6.42 9.99 -15.06 -0.15 -6.57 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 9 N -0.73 -17.07 5.43 -59.91 -0.33 -17.39 16 10 C 0.15 2.67 5.80 -4.04 -0.02 2.65 16 11 C 0.17 2.62 2.43 -67.93 -0.17 2.45 16 12 H 0.09 1.64 7.33 -51.93 -0.38 1.26 16 13 N -0.69 -10.05 4.46 -54.65 -0.24 -10.29 16 14 C 0.56 8.54 7.13 -12.19 -0.09 8.45 16 15 O -0.53 -9.39 13.46 5.35 0.07 -9.32 16 16 C -0.06 -0.75 5.91 -104.67 -0.62 -1.36 16 17 C -0.14 -1.45 9.61 -39.01 -0.37 -1.82 16 18 C 0.13 1.24 11.17 -17.62 -0.20 1.05 16 19 N -0.49 -5.43 9.87 -12.33 -0.12 -5.55 16 20 C 0.35 4.45 7.56 -154.40 -1.17 3.28 16 21 N -0.33 -4.13 3.81 -13.36 -0.05 -4.18 16 22 C 0.29 3.07 12.26 -90.33 -1.11 1.96 16 23 N -0.54 -6.10 11.19 -15.73 -0.18 -6.28 16 24 C 0.21 2.20 13.03 -91.77 -1.20 1.01 16 25 N -0.30 -3.90 12.02 29.30 0.35 -3.55 16 26 C -0.10 -1.35 9.29 -38.82 -0.36 -1.71 16 27 C -0.16 -2.15 5.36 -90.62 -0.49 -2.63 16 28 C -0.17 -2.09 10.18 -26.69 -0.27 -2.36 16 29 C -0.19 -2.41 9.73 -26.69 -0.26 -2.67 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.39 9.63 7.33 -40.82 -0.30 9.34 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.40 5.33 6.74 -40.82 -0.28 5.06 16 35 H 0.15 1.32 6.53 -52.49 -0.34 0.98 16 36 H 0.18 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.23 1.65 8.06 -52.48 -0.42 1.22 16 38 H 0.23 1.38 8.06 -52.48 -0.42 0.96 16 39 H 0.16 2.36 7.41 -52.48 -0.39 1.97 16 40 H 0.10 1.26 8.11 -51.93 -0.42 0.84 16 41 H 0.10 1.25 8.05 -51.93 -0.42 0.83 16 42 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.12 1.76 5.02 -51.93 -0.26 1.49 16 LS Contribution 378.52 15.07 5.70 5.70 Total: -1.00 -33.25 378.52 -10.94 -44.19 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -5.29 Total: 15.07 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -6.56 Total: 1.34 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: 0.16 Total: -73.49 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.07 Total: -9.32 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.25 -10.94 -44.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716632278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.605 kcal (2) G-P(sol) polarization free energy of solvation -33.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds