Wall clock time and date at job start Wed Apr 1 2020 00:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99967 * 2 1 4 4 H 1.48509 * 109.46989 * 270.00118 * 3 2 1 5 5 H 1.48499 * 109.47471 * 29.99779 * 3 2 1 6 6 H 1.48493 * 109.47431 * 150.00220 * 3 2 1 7 7 C 1.38808 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00039 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.46509 * 119.99741 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46666 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47191 * 65.00217 * 11 10 9 13 13 N 1.46496 * 109.47292 * 304.99530 * 11 10 9 14 14 C 1.34777 * 119.99989 * 154.99786 * 13 11 10 15 15 O 1.21512 * 119.99749 * 0.02562 * 14 13 11 16 16 C 1.48158 * 120.00124 * 179.97438 * 14 13 11 17 17 C 1.39938 * 120.89187 * 0.02562 * 16 14 13 18 18 C 1.38065 * 119.13385 * 180.02562 * 17 16 14 19 19 N 1.31832 * 120.98080 * 0.02562 * 18 17 16 20 20 C 1.32228 * 121.97678 * 359.97438 * 19 18 17 21 21 N 1.39868 * 119.62378 * 180.02562 * 20 19 18 22 22 C 1.34796 * 126.84844 * 359.97438 * 21 20 19 23 23 N 1.30822 * 108.02214 * 179.97438 * 22 21 20 24 24 C 1.33290 * 109.84310 * 359.97438 * 23 22 21 25 25 N 1.30719 * 109.01672 * 359.73890 * 24 23 22 26 26 C 1.38898 * 120.75090 * 0.02562 * 20 19 18 27 27 C 1.53001 * 109.46861 * 184.99988 * 11 10 9 28 28 C 1.53001 * 117.49781 * 248.74828 * 27 11 10 29 29 C 1.52997 * 117.50070 * 180.08567 * 27 11 10 30 30 H 0.97003 * 119.99925 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00144 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.46951 * 60.00233 * 10 9 7 33 33 H 1.08993 * 109.46780 * 299.99923 * 10 9 7 34 34 H 0.97001 * 120.00562 * 335.00473 * 13 11 10 35 35 H 1.08001 * 120.43688 * 0.04422 * 17 16 14 36 36 H 1.08005 * 119.50418 * 179.72510 * 18 17 16 37 37 H 1.08004 * 125.99267 * 359.95912 * 22 21 20 38 38 H 1.08006 * 125.49016 * 180.02562 * 24 23 22 39 39 H 1.08004 * 120.53167 * 180.02562 * 26 20 19 40 40 H 1.09002 * 115.54811 * 34.41547 * 27 11 10 41 41 H 1.08999 * 117.49929 * 0.02562 * 28 27 11 42 42 H 1.08998 * 117.50162 * 145.01874 * 28 27 11 43 43 H 1.08994 * 117.50314 * 214.97427 * 29 27 11 44 44 H 1.09004 * 117.49852 * 0.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4002 5 1 1.4477 2.6528 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.4974 -4.8138 -0.9310 13 7 0.1449 -4.6759 1.1319 14 6 -1.0796 -5.2366 1.0811 15 8 -1.4211 -5.8619 0.0968 16 6 -2.0088 -5.0917 2.2260 17 6 -1.6346 -4.3761 3.3689 18 6 -2.5290 -4.2643 4.4147 19 7 -3.7225 -4.8204 4.3493 20 6 -4.1188 -5.5054 3.2900 21 7 -5.3964 -6.0745 3.2729 22 6 -6.3229 -6.0106 4.2499 23 7 -7.3805 -6.6676 3.8483 24 6 -7.1699 -7.1618 2.6285 25 7 -5.9722 -6.8205 2.2315 26 6 -3.2808 -5.6662 2.1940 27 6 1.8248 -6.1411 0.1258 28 6 1.8339 -7.0695 -1.0903 29 6 1.0023 -7.4311 0.1430 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0002 32 1 2.6848 -3.7145 0.8894 33 1 2.6848 -3.7144 -0.8905 34 1 0.4176 -4.1769 1.9178 35 1 -0.6591 -3.9171 3.4320 36 1 -2.2448 -3.7172 5.3015 37 1 -6.2117 -5.5056 5.1981 38 1 -7.8769 -7.7459 2.0579 39 1 -3.6083 -6.2260 1.3304 40 1 2.7238 -6.1092 0.7414 41 1 1.2981 -6.7387 -1.9800 42 1 2.7386 -7.6487 -1.2746 43 1 1.3603 -8.2480 0.7695 44 1 -0.0809 -7.3384 0.0644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716632278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:27 Heat of formation + Delta-G solvation = 130.175885 kcal Electronic energy + Delta-G solvation = -28851.960868 eV Core-core repulsion = 24807.560214 eV Total energy + Delta-G solvation = -4044.400654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.47111 -41.85894 -40.64944 -38.47486 -36.64850 -35.64815 -35.00304 -33.97168 -32.93938 -32.42262 -31.14121 -29.74149 -26.51463 -25.86168 -25.32779 -23.74594 -23.26017 -23.08069 -22.67098 -21.88095 -21.38602 -20.01451 -19.14218 -18.45106 -17.73726 -17.21418 -16.93992 -16.90022 -16.70285 -16.58169 -16.31229 -15.89314 -15.46632 -15.37196 -15.18717 -15.05368 -15.00379 -14.79973 -14.42789 -13.75462 -13.37095 -13.28336 -13.18509 -12.81023 -12.72844 -12.51607 -12.35907 -12.13860 -12.06664 -11.84388 -11.57557 -11.34595 -11.22352 -11.15934 -11.08641 -11.08074 -10.97417 -10.82399 -10.07713 -9.84630 -9.00963 -7.93361 -5.22966 -0.75059 -0.42351 0.69393 0.77445 1.49953 1.51365 1.59287 1.69202 1.80026 1.87618 2.56575 2.60531 2.90897 3.08580 3.23664 3.35002 3.40850 3.43910 3.55564 3.70182 3.77166 3.90874 3.97767 4.10106 4.15125 4.17980 4.30867 4.43344 4.50800 4.52743 4.61618 4.79760 4.82344 4.89812 4.98338 5.03403 5.10132 5.13269 5.27641 5.28671 5.31648 5.47713 5.53699 5.72427 6.26682 6.35575 6.41589 6.87638 7.04680 7.34931 8.06898 8.30791 9.29210 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.010089 B = 0.002995 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.627628 B = 9347.389033 C =11296.683075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.970 3.030 4 H -0.294 1.294 5 H -0.298 1.298 6 H -0.265 1.265 7 C -0.240 4.240 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.150 3.850 11 C 0.178 3.822 12 H 0.060 0.940 13 N -0.687 5.687 14 C 0.558 3.442 15 O -0.561 6.561 16 C -0.070 4.070 17 C -0.132 4.132 18 C 0.145 3.855 19 N -0.485 5.485 20 C 0.344 3.656 21 N -0.343 5.343 22 C 0.295 3.705 23 N -0.557 5.557 24 C 0.217 3.783 25 N -0.344 5.344 26 C -0.117 4.117 27 C -0.161 4.161 28 C -0.164 4.164 29 C -0.185 4.185 30 H 0.249 0.751 31 H 0.374 0.626 32 H 0.048 0.952 33 H 0.038 0.962 34 H 0.413 0.587 35 H 0.174 0.826 36 H 0.223 0.777 37 H 0.257 0.743 38 H 0.260 0.740 39 H 0.139 0.861 40 H 0.127 0.873 41 H 0.081 0.919 42 H 0.117 0.883 43 H 0.104 0.896 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.837 -14.704 11.602 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.222 1.222 5 H -0.225 1.225 6 H -0.190 1.190 7 C -0.372 4.372 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.073 3.927 12 H 0.078 0.922 13 N -0.338 5.338 14 C 0.344 3.656 15 O -0.441 6.441 16 C -0.082 4.082 17 C -0.153 4.153 18 C -0.013 4.013 19 N -0.199 5.199 20 C 0.117 3.883 21 N -0.129 5.129 22 C 0.000 4.000 23 N -0.283 5.283 24 C -0.085 4.085 25 N -0.170 5.170 26 C -0.141 4.141 27 C -0.181 4.181 28 C -0.202 4.202 29 C -0.222 4.222 30 H 0.058 0.942 31 H 0.206 0.794 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.250 0.750 35 H 0.191 0.809 36 H 0.239 0.761 37 H 0.272 0.728 38 H 0.276 0.724 39 H 0.156 0.844 40 H 0.145 0.855 41 H 0.099 0.901 42 H 0.135 0.865 43 H 0.122 0.878 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.447 -15.194 11.068 19.317 hybrid contribution 0.495 1.307 -0.785 1.603 sum -3.952 -13.888 10.283 17.727 Atomic orbital electron populations 1.69821 1.06575 1.25897 1.59461 1.25498 0.96233 1.00900 1.03739 0.85198 0.77939 0.79826 0.77101 1.22200 1.22460 1.19005 1.19601 0.91602 0.84941 1.41057 0.90175 1.42523 1.05617 1.00896 1.89585 1.21061 0.93207 0.83514 0.99883 1.20653 0.89526 0.93774 0.88742 0.92198 1.45751 1.13696 1.53390 1.20939 1.18242 0.82002 0.78935 0.86382 1.90702 1.76597 1.42670 1.34165 1.20232 0.93941 0.98618 0.95398 1.22798 1.03366 0.96797 0.92309 1.23301 0.85168 0.93438 0.99358 1.66824 1.19927 1.09190 1.23953 1.17533 0.83469 0.95401 0.91866 1.47536 1.11423 1.39929 1.13978 1.27055 0.82664 0.94217 0.96107 1.70780 1.26353 1.17510 1.13698 1.27034 0.92860 0.97038 0.91569 1.78253 1.12750 1.15541 1.10415 1.21551 0.92985 1.00617 0.98919 1.22579 1.01846 0.89681 1.03990 1.22988 1.02685 1.02601 0.91918 1.23192 0.99227 0.97958 1.01866 0.94212 0.79412 0.93424 0.94368 0.74974 0.80887 0.76061 0.72774 0.72401 0.84357 0.85488 0.90090 0.86503 0.87763 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.70 13.06 21.65 0.28 -56.41 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 3 Si 0.97 43.96 29.55 68.60 2.03 45.98 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.24 -12.40 9.99 84.03 0.84 -11.56 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 9 N -0.74 -34.36 5.43 -343.45 -1.87 -36.23 16 10 C 0.15 5.25 5.80 86.38 0.50 5.75 16 11 C 0.18 5.51 2.43 44.99 0.11 5.62 16 12 H 0.06 2.25 7.33 -2.39 -0.02 2.23 16 13 N -0.69 -19.89 4.46 -445.12 -1.98 -21.88 16 14 C 0.56 17.65 7.13 86.88 0.62 18.27 16 15 O -0.56 -21.36 13.46 -3.75 -0.05 -21.42 16 16 C -0.07 -1.89 5.91 -19.90 -0.12 -2.01 16 17 C -0.13 -2.54 9.61 22.64 0.22 -2.33 16 18 C 0.15 2.32 11.17 84.65 0.95 3.27 16 19 N -0.49 -9.96 9.87 -192.93 -1.90 -11.87 16 20 C 0.34 8.75 7.56 132.76 1.00 9.76 16 21 N -0.34 -8.63 3.81 -196.17 -0.75 -9.38 16 22 C 0.29 5.99 12.26 180.25 2.21 8.20 16 23 N -0.56 -12.12 11.19 -203.69 -2.28 -14.40 16 24 C 0.22 4.46 13.03 180.75 2.35 6.82 16 25 N -0.34 -9.09 12.02 -61.21 -0.74 -9.83 16 26 C -0.12 -3.35 9.29 22.76 0.21 -3.14 16 27 C -0.16 -4.00 5.36 -10.79 -0.06 -4.05 16 28 C -0.16 -3.88 10.18 30.62 0.31 -3.57 16 29 C -0.19 -4.67 9.73 30.62 0.30 -4.37 16 30 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 31 H 0.37 18.95 7.33 -92.71 -0.68 18.27 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.41 10.45 6.74 -92.71 -0.62 9.82 16 35 H 0.17 2.57 6.53 -2.91 -0.02 2.55 16 36 H 0.22 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.26 3.24 8.06 -2.91 -0.02 3.22 16 38 H 0.26 2.92 8.06 -2.91 -0.02 2.90 16 39 H 0.14 4.51 7.41 -2.91 -0.02 4.48 16 40 H 0.13 2.63 8.11 -2.39 -0.02 2.62 16 41 H 0.08 2.15 8.05 -2.39 -0.02 2.13 16 42 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.09 2.82 5.02 -2.38 -0.01 2.81 16 Total: -1.00 -73.69 378.52 2.42 -71.26 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: -0.23 Total: 40.92 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: 9.91 Total: 23.24 kcal Atomic # 7 Polarization: -150.76 SS G_CDS: -9.23 Total: -160.00 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.05 Total: -21.42 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -73.69 2.42 -71.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716632278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.440 kcal (2) G-P(sol) polarization free energy of solvation -73.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds