Wall clock time and date at job start Wed Apr 1 2020 01:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 119.99856 * 2 1 4 4 H 1.48500 * 109.47591 * 270.00002 * 3 2 1 5 5 H 1.48498 * 109.47217 * 30.00106 * 3 2 1 6 6 H 1.48509 * 109.47309 * 149.99969 * 3 2 1 7 7 C 1.37873 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00533 * 173.55456 * 7 2 1 9 9 C 1.50705 * 119.99979 * 353.55073 * 7 2 1 10 10 C 1.52998 * 115.54620 * 85.40512 * 9 7 2 11 11 N 1.46501 * 109.47384 * 65.14558 * 10 9 7 12 12 C 1.34770 * 120.00248 * 178.28212 * 11 10 9 13 13 O 1.21282 * 120.00083 * 359.97438 * 12 11 10 14 14 C 1.50705 * 119.99961 * 179.97438 * 12 11 10 15 15 C 1.53007 * 109.47111 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47011 * 180.02562 * 15 14 12 17 17 C 1.50698 * 109.47004 * 180.02562 * 16 15 14 18 18 C 1.38300 * 120.08601 * 270.02350 * 17 16 15 19 19 C 1.38686 * 120.46305 * 180.09198 * 18 17 16 20 20 C 1.39367 * 119.91903 * 359.81662 * 19 18 17 21 21 C 1.39204 * 118.91272 * 0.13332 * 20 19 18 22 22 C 1.37678 * 120.96462 * 359.97438 * 21 20 19 23 23 C 1.51137 * 106.18264 * 179.97438 * 21 20 19 24 24 C 1.51393 * 104.19054 * 0.11092 * 23 21 20 25 25 O 1.21284 * 126.44149 * 179.97438 * 24 23 21 26 26 N 1.34365 * 107.11299 * 359.93171 * 24 23 21 27 27 C 1.52997 * 117.50201 * 231.07420 * 9 7 2 28 28 C 1.52997 * 117.49853 * 299.73668 * 9 7 2 29 29 H 0.97004 * 120.00356 * 5.06674 * 1 2 3 30 30 H 1.08996 * 109.47444 * 305.14209 * 10 9 7 31 31 H 1.09000 * 109.47336 * 185.14013 * 10 9 7 32 32 H 0.97007 * 120.00045 * 358.27385 * 11 10 9 33 33 H 1.08993 * 109.47395 * 59.99749 * 14 12 11 34 34 H 1.09002 * 109.47162 * 299.99531 * 14 12 11 35 35 H 1.09005 * 109.46635 * 60.00066 * 15 14 12 36 36 H 1.09002 * 109.47032 * 299.99988 * 15 14 12 37 37 H 1.08993 * 109.47446 * 60.00156 * 16 15 14 38 38 H 1.09002 * 109.47211 * 299.99876 * 16 15 14 39 39 H 1.07997 * 119.81278 * 359.97438 * 18 17 16 40 40 H 1.07997 * 120.14496 * 180.02562 * 19 18 17 41 41 H 1.08000 * 120.04585 * 179.97438 * 22 21 20 42 42 H 1.08999 * 110.50975 * 241.39363 * 23 21 20 43 43 H 1.09008 * 110.50682 * 118.82788 * 23 21 20 44 44 H 0.96995 * 123.87636 * 180.02562 * 26 24 23 45 45 H 1.08997 * 117.50400 * 215.00197 * 27 9 7 46 46 H 1.09000 * 117.49494 * 0.02562 * 27 9 7 47 47 H 1.08995 * 117.50182 * 359.97438 * 28 9 7 48 48 H 1.09004 * 117.49451 * 144.97051 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0793 -1.1970 -0.1055 9 6 1.2582 -2.4951 0.1455 10 6 0.7021 -3.0859 -1.1517 11 7 1.8111 -3.4583 -2.0335 12 6 1.5599 -4.0345 -3.2256 13 8 0.4157 -4.2452 -3.5682 14 6 2.7008 -4.4170 -4.1330 15 6 2.1459 -5.0478 -5.4118 16 6 3.3042 -5.4367 -6.3327 17 6 2.7577 -6.0575 -7.5925 18 6 2.5508 -7.4233 -7.6591 19 6 2.0500 -8.0030 -8.8151 20 6 1.7484 -7.2061 -9.9180 21 6 1.9614 -5.8330 -9.8346 22 6 2.4609 -5.2622 -8.6856 23 6 1.5451 -5.2603 -11.1698 24 6 1.0890 -6.4654 -11.9646 25 8 0.6686 -6.4610 -13.1023 26 7 1.2384 -7.5407 -11.1730 27 6 1.7471 -3.4739 1.2150 28 6 0.4418 -2.7017 1.4229 29 1 -0.4851 0.8368 -0.0742 30 1 0.0754 -2.3456 -1.6488 31 1 0.1075 -3.9703 -0.9226 32 1 2.7263 -3.2900 -1.7594 33 1 3.3448 -5.1343 -3.6244 34 1 3.2771 -3.5274 -4.3869 35 1 1.5016 -4.3308 -5.9206 36 1 1.5698 -5.9376 -5.1576 37 1 3.9481 -6.1539 -5.8237 38 1 3.8807 -4.5473 -6.5869 39 1 2.7823 -8.0437 -6.8059 40 1 1.8900 -9.0701 -8.8614 41 1 2.6208 -4.1952 -8.6372 42 1 2.3913 -4.7780 -11.6591 43 1 0.7249 -4.5535 -11.0431 44 1 1.0174 -8.4457 -11.4430 45 1 1.6726 -4.5387 0.9946 46 1 2.6083 -3.1765 1.8132 47 1 0.4448 -1.8969 2.1578 48 1 -0.4917 -3.2583 1.3390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431135281.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:17 Heat of formation + Delta-G solvation = -36.858443 kcal Electronic energy + Delta-G solvation = -27779.733289 eV Core-core repulsion = 23799.337075 eV Total energy + Delta-G solvation = -3980.396214 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.74180 -39.25663 -38.85838 -36.85547 -36.52718 -34.13653 -33.25706 -32.64326 -32.00324 -30.58955 -28.56799 -27.28816 -25.89613 -24.99285 -22.84802 -22.27193 -21.52131 -21.21876 -20.82945 -19.68657 -19.21393 -18.27717 -17.09412 -16.73605 -16.39333 -16.03395 -15.84281 -15.50591 -15.05824 -14.83005 -14.69943 -14.56754 -14.08969 -13.88684 -13.68705 -13.55791 -13.39445 -13.14682 -12.99175 -12.67005 -12.63475 -12.15456 -11.88002 -11.65665 -11.55229 -11.34760 -11.20495 -11.02968 -10.96037 -10.85585 -10.68284 -10.57218 -10.55427 -10.29993 -9.68782 -9.27915 -9.20135 -8.99261 -8.52885 -8.30705 -8.26234 -8.08481 -6.10818 -4.19737 0.79095 0.96443 2.06737 2.60286 3.22773 3.23832 3.31251 3.32662 3.36478 3.70789 3.90041 4.01894 4.32327 4.43670 4.56461 4.80539 4.82679 4.96207 5.01806 5.06100 5.09544 5.17394 5.20074 5.31571 5.38556 5.40917 5.61096 5.63736 5.68312 5.72560 5.78790 5.96601 6.02374 6.08282 6.21761 6.31024 6.35205 6.35930 6.37732 6.44628 6.55056 6.64812 6.66320 6.87549 7.06756 7.28472 7.41170 7.46217 7.54543 7.78128 8.30266 8.31869 8.80779 8.90930 9.47152 10.96963 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.017630 B = 0.001733 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.797239 B =16153.747325 C =16906.255369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.500 4.500 8 H 0.060 0.940 9 C 0.026 3.974 10 C 0.163 3.837 11 N -0.705 5.705 12 C 0.501 3.499 13 O -0.560 6.560 14 C -0.141 4.141 15 C -0.097 4.097 16 C -0.079 4.079 17 C -0.091 4.091 18 C -0.082 4.082 19 C -0.134 4.134 20 C 0.129 3.871 21 C -0.139 4.139 22 C -0.062 4.062 23 C -0.116 4.116 24 C 0.529 3.471 25 O -0.509 6.509 26 N -0.660 5.660 27 C -0.210 4.210 28 C -0.149 4.149 29 H 0.262 0.738 30 H 0.071 0.929 31 H 0.036 0.964 32 H 0.400 0.600 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.412 0.588 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.340 -14.205 -16.504 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.026 3.974 10 C 0.040 3.960 11 N -0.353 5.353 12 C 0.286 3.714 13 O -0.439 6.439 14 C -0.181 4.181 15 C -0.135 4.135 16 C -0.117 4.117 17 C -0.092 4.092 18 C -0.100 4.100 19 C -0.155 4.155 20 C 0.032 3.968 21 C -0.142 4.142 22 C -0.081 4.081 23 C -0.155 4.155 24 C 0.317 3.683 25 O -0.383 6.383 26 N -0.303 5.303 27 C -0.248 4.248 28 C -0.187 4.187 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.234 0.766 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.150 0.850 40 H 0.144 0.856 41 H 0.149 0.851 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.250 0.750 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.102 0.898 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.097 -14.081 -17.340 23.437 hybrid contribution 0.643 0.543 0.129 0.851 sum 7.739 -13.538 -17.211 23.225 Atomic orbital electron populations 1.69974 1.05910 1.26958 1.48152 1.24997 0.94814 0.98993 0.94322 0.86627 0.79918 0.83522 0.78153 1.20652 1.21173 1.19816 1.20324 0.92797 0.88579 1.52088 0.92188 1.19055 0.98604 0.93956 0.85817 1.20967 0.87449 0.96828 0.90761 1.46016 1.11367 1.60078 1.17875 1.20572 0.90453 0.78095 0.82262 1.90659 1.23052 1.55730 1.74494 1.21677 0.97710 1.02484 0.96273 1.21305 0.96829 1.01659 0.93681 1.20633 0.97832 1.00764 0.92422 1.19824 1.00452 0.93372 0.95531 1.20988 0.97691 0.94540 0.96816 1.20533 1.03992 0.99332 0.91621 1.18201 0.98151 0.94320 0.86117 1.19813 1.05269 0.93000 0.96108 1.20200 0.97200 1.00115 0.90561 1.21058 1.04229 0.97618 0.92585 1.20638 0.76554 0.85788 0.85347 1.90823 1.45547 1.85671 1.16306 1.43727 1.62173 1.11416 1.12984 1.23019 0.98675 0.95635 1.07444 1.22491 0.92271 1.01093 1.02812 0.92824 0.91065 0.94612 0.76646 0.89333 0.89081 0.91006 0.91124 0.90689 0.90653 0.85028 0.85597 0.85108 0.85921 0.85795 0.75014 0.91667 0.90356 0.89829 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.97 12.91 55.43 0.72 -23.25 16 2 C 0.07 1.90 5.39 -17.82 -0.10 1.81 16 3 Si 0.89 20.14 29.55 -169.99 -5.02 15.12 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.50 -12.55 8.63 -34.44 -0.30 -12.85 16 8 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 9 C 0.03 0.61 1.38 -155.66 -0.21 0.39 16 10 C 0.16 3.63 5.50 -4.04 -0.02 3.60 16 11 N -0.70 -12.99 5.47 -60.30 -0.33 -13.32 16 12 C 0.50 8.66 7.83 -10.99 -0.09 8.57 16 13 O -0.56 -11.91 15.98 5.56 0.09 -11.82 16 14 C -0.14 -1.62 5.70 -27.88 -0.16 -1.77 16 15 C -0.10 -1.03 4.49 -26.73 -0.12 -1.15 16 16 C -0.08 -0.60 5.35 -27.88 -0.15 -0.75 16 17 C -0.09 -0.73 5.14 -104.54 -0.54 -1.27 16 18 C -0.08 -0.61 9.70 -39.39 -0.38 -0.99 16 19 C -0.13 -0.96 10.12 -39.00 -0.39 -1.36 16 20 C 0.13 1.03 7.12 -83.57 -0.59 0.44 16 21 C -0.14 -1.12 6.36 -104.25 -0.66 -1.79 16 22 C -0.06 -0.50 9.70 -39.73 -0.39 -0.88 16 23 C -0.12 -0.82 6.87 -28.48 -0.20 -1.02 16 24 C 0.53 4.97 8.71 -10.83 -0.09 4.87 16 25 O -0.51 -6.54 18.03 5.55 0.10 -6.44 16 26 N -0.66 -5.04 5.88 -9.63 -0.06 -5.10 16 27 C -0.21 -4.26 9.96 -26.69 -0.27 -4.52 16 28 C -0.15 -3.34 9.42 -26.69 -0.25 -3.59 16 29 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 30 H 0.07 1.84 8.14 -51.93 -0.42 1.41 16 31 H 0.04 0.79 8.09 -51.93 -0.42 0.37 16 32 H 0.40 6.61 8.37 -40.82 -0.34 6.27 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 38 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.12 0.76 8.14 -51.92 -0.42 0.34 16 44 H 0.41 2.32 8.96 -40.82 -0.37 1.96 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 47 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 48 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 407.88 15.07 6.15 6.15 Total: -1.00 -32.38 407.88 -10.69 -43.08 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -7.43 Total: 7.83 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -4.91 Total: -12.24 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.33 Total: -41.67 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.19 Total: -18.26 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.38 -10.69 -43.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431135281.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.221 kcal (2) G-P(sol) polarization free energy of solvation -32.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds