Wall clock time and date at job start Wed Apr 1 2020 01:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 119.99856 * 2 1 4 4 H 1.48500 * 109.47591 * 270.00002 * 3 2 1 5 5 H 1.48498 * 109.47217 * 30.00106 * 3 2 1 6 6 H 1.48509 * 109.47309 * 149.99969 * 3 2 1 7 7 C 1.37873 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00533 * 173.55456 * 7 2 1 9 9 C 1.50705 * 119.99979 * 353.55073 * 7 2 1 10 10 C 1.52998 * 115.54620 * 85.40512 * 9 7 2 11 11 N 1.46501 * 109.47384 * 65.14558 * 10 9 7 12 12 C 1.34770 * 120.00248 * 178.28212 * 11 10 9 13 13 O 1.21282 * 120.00083 * 359.97438 * 12 11 10 14 14 C 1.50705 * 119.99961 * 179.97438 * 12 11 10 15 15 C 1.53007 * 109.47111 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47011 * 180.02562 * 15 14 12 17 17 C 1.50698 * 109.47004 * 180.02562 * 16 15 14 18 18 C 1.38300 * 120.08601 * 270.02350 * 17 16 15 19 19 C 1.38686 * 120.46305 * 180.09198 * 18 17 16 20 20 C 1.39367 * 119.91903 * 359.81662 * 19 18 17 21 21 C 1.39204 * 118.91272 * 0.13332 * 20 19 18 22 22 C 1.37678 * 120.96462 * 359.97438 * 21 20 19 23 23 C 1.51137 * 106.18264 * 179.97438 * 21 20 19 24 24 C 1.51393 * 104.19054 * 0.11092 * 23 21 20 25 25 O 1.21284 * 126.44149 * 179.97438 * 24 23 21 26 26 N 1.34365 * 107.11299 * 359.93171 * 24 23 21 27 27 C 1.52997 * 117.50201 * 231.07420 * 9 7 2 28 28 C 1.52997 * 117.49853 * 299.73668 * 9 7 2 29 29 H 0.97004 * 120.00356 * 5.06674 * 1 2 3 30 30 H 1.08996 * 109.47444 * 305.14209 * 10 9 7 31 31 H 1.09000 * 109.47336 * 185.14013 * 10 9 7 32 32 H 0.97007 * 120.00045 * 358.27385 * 11 10 9 33 33 H 1.08993 * 109.47395 * 59.99749 * 14 12 11 34 34 H 1.09002 * 109.47162 * 299.99531 * 14 12 11 35 35 H 1.09005 * 109.46635 * 60.00066 * 15 14 12 36 36 H 1.09002 * 109.47032 * 299.99988 * 15 14 12 37 37 H 1.08993 * 109.47446 * 60.00156 * 16 15 14 38 38 H 1.09002 * 109.47211 * 299.99876 * 16 15 14 39 39 H 1.07997 * 119.81278 * 359.97438 * 18 17 16 40 40 H 1.07997 * 120.14496 * 180.02562 * 19 18 17 41 41 H 1.08000 * 120.04585 * 179.97438 * 22 21 20 42 42 H 1.08999 * 110.50975 * 241.39363 * 23 21 20 43 43 H 1.09008 * 110.50682 * 118.82788 * 23 21 20 44 44 H 0.96995 * 123.87636 * 180.02562 * 26 24 23 45 45 H 1.08997 * 117.50400 * 215.00197 * 27 9 7 46 46 H 1.09000 * 117.49494 * 0.02562 * 27 9 7 47 47 H 1.08995 * 117.50182 * 359.97438 * 28 9 7 48 48 H 1.09004 * 117.49451 * 144.97051 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0793 -1.1970 -0.1055 9 6 1.2582 -2.4951 0.1455 10 6 0.7021 -3.0859 -1.1517 11 7 1.8111 -3.4583 -2.0335 12 6 1.5599 -4.0345 -3.2256 13 8 0.4157 -4.2452 -3.5682 14 6 2.7008 -4.4170 -4.1330 15 6 2.1459 -5.0478 -5.4118 16 6 3.3042 -5.4367 -6.3327 17 6 2.7577 -6.0575 -7.5925 18 6 2.5508 -7.4233 -7.6591 19 6 2.0500 -8.0030 -8.8151 20 6 1.7484 -7.2061 -9.9180 21 6 1.9614 -5.8330 -9.8346 22 6 2.4609 -5.2622 -8.6856 23 6 1.5451 -5.2603 -11.1698 24 6 1.0890 -6.4654 -11.9646 25 8 0.6686 -6.4610 -13.1023 26 7 1.2384 -7.5407 -11.1730 27 6 1.7471 -3.4739 1.2150 28 6 0.4418 -2.7017 1.4229 29 1 -0.4851 0.8368 -0.0742 30 1 0.0754 -2.3456 -1.6488 31 1 0.1075 -3.9703 -0.9226 32 1 2.7263 -3.2900 -1.7594 33 1 3.3448 -5.1343 -3.6244 34 1 3.2771 -3.5274 -4.3869 35 1 1.5016 -4.3308 -5.9206 36 1 1.5698 -5.9376 -5.1576 37 1 3.9481 -6.1539 -5.8237 38 1 3.8807 -4.5473 -6.5869 39 1 2.7823 -8.0437 -6.8059 40 1 1.8900 -9.0701 -8.8614 41 1 2.6208 -4.1952 -8.6372 42 1 2.3913 -4.7780 -11.6591 43 1 0.7249 -4.5535 -11.0431 44 1 1.0174 -8.4457 -11.4430 45 1 1.6726 -4.5387 0.9946 46 1 2.6083 -3.1765 1.8132 47 1 0.4448 -1.8969 2.1578 48 1 -0.4917 -3.2583 1.3390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431135281.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:16 Heat of formation + Delta-G solvation = -56.320382 kcal Electronic energy + Delta-G solvation = -27780.577222 eV Core-core repulsion = 23799.337075 eV Total energy + Delta-G solvation = -3981.240147 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.36825 -40.60402 -39.63584 -38.48202 -37.34892 -34.96012 -34.84675 -33.94894 -33.21112 -31.36556 -29.21479 -28.46595 -27.51779 -26.43332 -23.60371 -23.03824 -22.86968 -22.17811 -21.49085 -21.30441 -20.78559 -18.88821 -18.32874 -17.77152 -17.57536 -17.05886 -16.81261 -16.60374 -16.56159 -16.16866 -15.74673 -15.55787 -15.24578 -14.90727 -14.64740 -14.54801 -14.35222 -14.15413 -13.92134 -13.70092 -13.60627 -13.45278 -13.27395 -12.90821 -12.82869 -12.68717 -12.60279 -12.32815 -12.10180 -12.02848 -11.83922 -11.53713 -11.47329 -11.44795 -11.31227 -10.84218 -10.78187 -10.43982 -10.01359 -9.75866 -9.74922 -8.89045 -8.08168 -6.21365 0.17629 0.40980 1.38272 1.43764 1.46899 1.55006 1.87069 2.00299 2.42922 2.51667 2.81118 3.10523 3.20307 3.44011 3.51897 3.88263 3.94477 4.02265 4.18969 4.26668 4.28448 4.39978 4.43329 4.46023 4.56039 4.57773 4.66825 4.73255 4.74238 4.78533 4.86703 4.87908 5.01154 5.07315 5.07669 5.11067 5.14943 5.28695 5.33105 5.39155 5.52765 5.61261 5.62990 5.63616 5.74965 5.75271 5.78992 5.80981 6.07923 6.38372 6.84853 6.89203 6.90846 7.48078 7.52351 8.99391 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.017630 B = 0.001733 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.797239 B =16153.747325 C =16906.255369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 0.951 3.049 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.262 1.262 7 C -0.501 4.501 8 H 0.067 0.933 9 C 0.003 3.997 10 C 0.179 3.821 11 N -0.702 5.702 12 C 0.494 3.506 13 O -0.605 6.605 14 C -0.129 4.129 15 C -0.091 4.091 16 C -0.069 4.069 17 C -0.101 4.101 18 C -0.088 4.088 19 C -0.134 4.134 20 C 0.113 3.887 21 C -0.148 4.148 22 C -0.072 4.072 23 C -0.112 4.112 24 C 0.523 3.477 25 O -0.552 6.552 26 N -0.652 5.652 27 C -0.173 4.173 28 C -0.164 4.164 29 H 0.258 0.742 30 H 0.024 0.976 31 H 0.031 0.969 32 H 0.411 0.589 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.134 0.866 44 H 0.420 0.580 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.062 0.938 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.277 -15.125 -16.294 24.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.179 4.179 3 Si 0.777 3.223 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.186 1.186 7 C -0.539 4.539 8 H 0.085 0.915 9 C 0.003 3.997 10 C 0.055 3.945 11 N -0.352 5.352 12 C 0.283 3.717 13 O -0.488 6.488 14 C -0.168 4.168 15 C -0.130 4.130 16 C -0.106 4.106 17 C -0.102 4.102 18 C -0.107 4.107 19 C -0.155 4.155 20 C 0.016 3.984 21 C -0.151 4.151 22 C -0.090 4.090 23 C -0.150 4.150 24 C 0.313 3.687 25 O -0.430 6.430 26 N -0.295 5.295 27 C -0.210 4.210 28 C -0.202 4.202 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.247 0.753 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.167 0.833 40 H 0.163 0.837 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.151 0.849 44 H 0.259 0.741 45 H 0.108 0.892 46 H 0.106 0.894 47 H 0.081 0.919 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.093 -15.026 -17.101 24.902 hybrid contribution -0.294 0.763 0.107 0.824 sum 9.798 -14.264 -16.994 24.254 Atomic orbital electron populations 1.70113 1.07392 1.27280 1.50002 1.25746 0.95449 1.02239 0.94502 0.85663 0.78918 0.79658 0.78042 1.20401 1.21918 1.18628 1.20664 0.93211 0.89394 1.50597 0.91477 1.19106 0.99624 0.94626 0.86384 1.20481 0.88120 0.95175 0.90754 1.45937 1.10869 1.60310 1.18071 1.21695 0.91486 0.76520 0.82014 1.90641 1.25586 1.57310 1.75253 1.21732 0.95590 1.04309 0.95194 1.21233 0.97655 1.00279 0.93803 1.20563 0.96638 1.01888 0.91497 1.19997 1.00619 0.93783 0.95754 1.21272 0.97314 0.94681 0.97391 1.20806 1.03174 1.00360 0.91162 1.18401 0.98874 0.94724 0.86363 1.19974 1.05369 0.93239 0.96479 1.20400 0.97227 1.00834 0.90571 1.21087 1.05108 0.96859 0.91972 1.20980 0.75935 0.86862 0.84944 1.90795 1.47740 1.86380 1.18090 1.43676 1.61381 1.11642 1.12777 1.23003 0.97209 0.96261 1.04570 1.22433 0.93830 1.01512 1.02422 0.93327 0.95728 0.95066 0.75270 0.85859 0.86816 0.93398 0.92640 0.88609 0.89280 0.83287 0.83688 0.84055 0.84153 0.84873 0.74137 0.89228 0.89423 0.91917 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.14 12.91 21.44 0.28 -50.86 16 2 C 0.02 1.10 5.39 84.65 0.46 1.55 16 3 Si 0.95 41.23 29.55 68.60 2.03 43.26 16 4 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.50 -24.77 8.63 25.60 0.22 -24.55 16 8 H 0.07 3.15 7.82 -2.91 -0.02 3.13 16 9 C 0.00 0.15 1.38 -52.93 -0.07 0.08 16 10 C 0.18 8.06 5.50 86.38 0.48 8.53 16 11 N -0.70 -25.11 5.47 -463.07 -2.54 -27.64 16 12 C 0.49 16.57 7.83 87.66 0.69 17.25 16 13 O -0.61 -26.10 15.98 -3.04 -0.05 -26.14 16 14 C -0.13 -2.55 5.70 29.85 0.17 -2.38 16 15 C -0.09 -1.76 4.49 30.60 0.14 -1.63 16 16 C -0.07 -0.81 5.35 29.85 0.16 -0.65 16 17 C -0.10 -1.39 5.14 -19.81 -0.10 -1.49 16 18 C -0.09 -1.10 9.70 22.39 0.22 -0.88 16 19 C -0.13 -1.68 10.12 22.65 0.23 -1.45 16 20 C 0.11 1.68 7.12 38.42 0.27 1.96 16 21 C -0.15 -2.21 6.36 -19.63 -0.12 -2.34 16 22 C -0.07 -1.03 9.70 22.18 0.22 -0.81 16 23 C -0.11 -1.49 6.87 29.46 0.20 -1.29 16 24 C 0.52 9.81 8.71 87.94 0.77 10.58 16 25 O -0.55 -14.55 18.03 -3.04 -0.05 -14.61 16 26 N -0.65 -9.64 5.88 -302.99 -1.78 -11.42 16 27 C -0.17 -6.63 9.96 30.62 0.30 -6.32 16 28 C -0.16 -7.36 9.42 30.62 0.29 -7.07 16 29 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 30 H 0.02 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.03 1.40 8.09 -2.39 -0.02 1.38 16 32 H 0.41 12.65 8.37 -92.70 -0.78 11.88 16 33 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.05 1.15 8.10 -2.38 -0.02 1.13 16 36 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 37 H 0.10 0.77 8.09 -2.39 -0.02 0.75 16 38 H 0.09 0.84 8.09 -2.39 -0.02 0.82 16 39 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 40 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 41 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.13 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.42 4.57 8.96 -92.71 -0.83 3.73 16 45 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 46 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 47 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 48 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -72.54 407.88 1.76 -70.77 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: -0.62 Total: 27.56 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 4.50 Total: -10.91 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -4.04 Total: -89.93 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -0.10 Total: -40.75 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -72.54 1.76 -70.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431135281.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.453 kcal (2) G-P(sol) polarization free energy of solvation -72.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds