Wall clock time and date at job start Wed Apr 1 2020 01:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76195 * 102.99929 * 2 1 4 4 C 1.38959 * 120.05809 * 359.97438 * 3 2 1 5 5 C 1.38079 * 119.94865 * 179.97438 * 4 3 2 6 6 C 1.38500 * 120.05209 * 359.97438 * 5 4 3 7 7 F 1.35099 * 119.94476 * 180.02562 * 6 5 4 8 8 C 1.38457 * 120.10953 * 0.03633 * 6 5 4 9 9 C 1.38124 * 120.05659 * 359.70888 * 8 6 5 10 10 C 1.50694 * 120.02625 * 180.27250 * 9 8 6 11 11 N 1.46906 * 109.47088 * 260.24975 * 10 9 8 12 12 C 1.46903 * 111.00005 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.46844 * 180.02562 * 12 11 10 14 14 H 1.09003 * 109.47389 * 304.99944 * 13 12 11 15 15 O 1.42904 * 109.47396 * 65.00514 * 13 12 11 16 16 C 1.53001 * 109.46913 * 185.00240 * 13 12 11 17 17 N 1.46903 * 109.47150 * 180.02562 * 16 13 12 18 18 C 1.46900 * 110.99710 * 293.95164 * 17 16 13 19 19 C 1.46898 * 111.00290 * 170.00040 * 17 16 13 20 20 C 1.50692 * 109.47372 * 189.99562 * 19 17 16 21 21 H 1.08004 * 120.00072 * 0.02562 * 20 19 17 22 22 C 1.37884 * 120.00331 * 179.97438 * 20 19 17 23 23 N 1.31515 * 119.99349 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47250 * 89.99912 * 24 22 20 26 26 H 1.48498 * 109.47093 * 209.99930 * 24 22 20 27 27 H 1.48501 * 109.46851 * 329.99850 * 24 22 20 28 28 H 1.09001 * 109.47190 * 299.99963 * 1 2 3 29 29 H 1.09004 * 109.47089 * 60.00096 * 1 2 3 30 30 H 1.09004 * 109.47568 * 180.02562 * 1 2 3 31 31 H 1.08006 * 120.02393 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.97396 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.96780 * 179.97438 * 8 6 5 34 34 H 1.09003 * 109.47811 * 20.25321 * 10 9 8 35 35 H 1.09005 * 109.47476 * 140.25606 * 10 9 8 36 36 H 1.00896 * 110.99894 * 303.95909 * 11 10 9 37 37 H 1.08997 * 109.47052 * 300.00631 * 12 11 10 38 38 H 1.09003 * 109.47148 * 60.00276 * 12 11 10 39 39 H 0.96698 * 114.00008 * 59.99453 * 15 13 12 40 40 H 1.08999 * 109.47144 * 299.99655 * 16 13 12 41 41 H 1.09001 * 109.47543 * 60.00105 * 16 13 12 42 42 H 1.09001 * 109.47189 * 60.00406 * 18 17 16 43 43 H 1.09002 * 109.47128 * 180.02562 * 18 17 16 44 44 H 1.08998 * 109.47511 * 300.00429 * 18 17 16 45 45 H 1.09004 * 109.46949 * 309.99852 * 19 17 16 46 46 H 1.09001 * 109.47025 * 69.99620 * 19 17 16 47 47 H 0.97005 * 119.99390 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1950 2.6655 -0.0005 5 6 1.5082 4.0103 0.0000 6 6 2.8330 4.4139 0.0016 7 9 3.1370 5.7303 0.0027 8 6 3.8465 3.4706 0.0019 9 6 3.5384 2.1242 0.0067 10 6 4.6420 1.0981 0.0133 11 7 4.8438 0.5873 -1.3493 12 6 5.9144 -0.4181 -1.3814 13 6 6.0952 -0.9248 -2.8137 14 1 5.1416 -1.2931 -3.1919 15 8 6.5557 0.1442 -3.6427 16 6 7.1218 -2.0593 -2.8274 17 7 7.2959 -2.5454 -4.2027 18 6 6.0665 -3.1805 -4.6961 19 6 8.4373 -3.4654 -4.2954 20 6 8.7373 -3.7495 -5.7446 21 1 8.1400 -3.2920 -6.5194 22 6 9.7749 -4.5926 -6.0815 23 7 10.5026 -5.1493 -5.1379 24 14 10.1472 -4.9441 -7.8779 25 1 11.1222 -3.9459 -8.3860 26 1 10.7218 -6.3074 -8.0068 27 1 8.8934 -4.8586 -8.6691 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.1617 2.3512 -0.0005 32 1 0.7193 4.7480 0.0000 33 1 4.8789 3.7879 0.0028 34 1 5.5639 1.5581 0.3691 35 1 4.3686 0.2746 0.6731 36 1 3.9858 0.2136 -1.7261 37 1 6.8452 0.0311 -1.0350 38 1 5.6495 -1.2519 -0.7313 39 1 7.4015 0.5214 -3.3645 40 1 8.0754 -1.6910 -2.4493 41 1 6.7707 -2.8748 -2.1951 42 1 5.2524 -2.4559 -4.6820 43 1 6.2232 -3.5318 -5.7160 44 1 5.8120 -4.0254 -4.0562 45 1 9.3097 -3.0105 -3.8261 46 1 8.1950 -4.3976 -3.7850 47 1 11.2328 -5.7422 -5.3750 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516644654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:13 Heat of formation + Delta-G solvation = -63.735638 kcal Electronic energy + Delta-G solvation = -26744.845078 eV Core-core repulsion = 22775.267028 eV Total energy + Delta-G solvation = -3969.578050 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.20358 -39.65284 -38.17290 -36.08279 -35.01669 -32.49948 -32.17491 -31.28162 -29.52237 -29.26568 -27.19414 -26.51911 -24.92214 -23.41111 -23.16982 -21.89558 -21.22918 -20.10660 -18.11734 -17.58568 -17.11030 -16.49375 -16.21781 -15.95245 -15.68619 -15.34822 -15.18048 -14.92377 -14.74897 -14.58204 -14.32537 -14.21457 -13.91376 -13.77817 -13.44701 -13.34694 -13.09266 -12.73767 -12.61111 -12.44776 -12.29623 -11.93095 -11.79507 -11.48783 -11.29496 -11.08173 -10.86222 -10.71478 -10.66817 -10.61331 -10.25985 -9.96589 -9.93334 -9.58000 -9.45370 -9.06962 -8.50755 -8.40772 -7.79910 -7.15833 -6.00267 -4.00906 0.57671 0.73447 1.03754 1.91987 2.99683 3.34865 3.40374 3.44662 3.80016 4.03873 4.22128 4.32910 4.46103 4.55941 4.57865 4.64312 4.77921 4.82445 4.90682 5.03984 5.12847 5.17139 5.22849 5.32972 5.34724 5.40699 5.46332 5.59086 5.61973 5.67893 5.68582 5.72898 5.93154 6.09864 6.23935 6.33688 6.37809 6.44638 6.78470 6.80470 7.20924 7.30345 7.35777 7.83589 8.08742 8.19428 8.25343 8.58982 9.07270 9.63135 11.10720 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.018619 B = 0.001931 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.492644 B =14498.673308 C =15278.137538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 S -0.103 6.103 3 C -0.094 4.094 4 C -0.105 4.105 5 C -0.136 4.136 6 C 0.094 3.906 7 F -0.138 7.138 8 C -0.115 4.115 9 C -0.030 4.030 10 C 0.093 3.907 11 N -0.671 5.671 12 C 0.026 3.974 13 C 0.118 3.882 14 H 0.091 0.909 15 O -0.535 6.535 16 C 0.024 3.976 17 N -0.529 5.529 18 C 0.037 3.963 19 C 0.193 3.807 20 C -0.504 4.504 21 H 0.064 0.936 22 C 0.053 3.947 23 N -0.901 5.901 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.288 1.288 27 H -0.274 1.274 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.143 0.857 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.346 0.654 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.368 0.632 40 H 0.070 0.930 41 H 0.027 0.973 42 H 0.047 0.953 43 H 0.074 0.926 44 H 0.007 0.993 45 H 0.028 0.972 46 H -0.011 1.011 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.132 15.577 16.263 30.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 S 0.139 5.861 3 C -0.208 4.208 4 C -0.129 4.129 5 C -0.157 4.157 6 C 0.073 3.927 7 F -0.117 7.117 8 C -0.136 4.136 9 C -0.036 4.036 10 C -0.036 4.036 11 N -0.303 5.303 12 C -0.103 4.103 13 C 0.058 3.942 14 H 0.109 0.891 15 O -0.339 6.339 16 C -0.105 4.105 17 N -0.253 5.253 18 C -0.112 4.112 19 C 0.067 3.933 20 C -0.543 4.543 21 H 0.082 0.918 22 C -0.148 4.148 23 N -0.541 5.541 24 Si 0.727 3.273 25 H -0.206 1.206 26 H -0.214 1.214 27 H -0.198 1.198 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.129 0.871 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.161 0.839 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.165 0.835 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.214 0.786 40 H 0.088 0.912 41 H 0.045 0.955 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.026 0.974 45 H 0.046 0.954 46 H 0.006 0.994 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.367 15.190 15.476 29.750 hybrid contribution -0.639 -0.296 0.441 0.831 sum -21.006 14.893 15.917 30.273 Atomic orbital electron populations 1.23754 0.94961 1.07452 1.05718 1.85647 1.06362 1.01972 1.92075 1.21708 0.95967 0.97286 1.05817 1.20962 0.98586 0.91970 1.01387 1.21012 0.95059 0.96632 1.02967 1.17657 0.93588 0.77879 1.03599 1.91514 1.93968 1.32281 1.93909 1.20993 0.99647 0.91554 1.01449 1.19256 0.92150 0.93842 0.98345 1.20919 0.96212 0.95214 0.91276 1.60470 1.11127 1.39800 1.18869 1.22767 0.95562 0.93432 0.98572 1.21838 0.97627 0.86908 0.87861 0.89073 1.86593 1.41657 1.50604 1.55009 1.22723 0.98949 0.96634 0.92236 1.62009 1.05209 1.40686 1.17358 1.22247 0.91922 0.95731 1.01288 1.19742 0.87259 0.88711 0.97540 1.21176 1.14725 1.26373 0.91987 0.91782 1.25003 0.96137 0.95998 0.97638 1.69965 1.20181 1.31725 1.32185 0.86483 0.78559 0.77324 0.84955 1.20609 1.21399 1.19847 0.89695 0.89492 0.87136 0.84893 0.84456 0.83906 0.89527 0.93363 0.83454 0.90473 0.94399 0.78559 0.91170 0.95529 0.93449 0.90709 0.97438 0.95386 0.99360 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.15 101.05 0.92 0.23 16 2 S -0.10 -0.82 20.10 -107.50 -2.16 -2.98 16 3 C -0.09 -0.82 6.11 -39.06 -0.24 -1.06 16 4 C -0.11 -0.78 9.36 -39.37 -0.37 -1.15 16 5 C -0.14 -1.05 10.02 -39.54 -0.40 -1.45 16 6 C 0.09 0.87 7.30 -39.40 -0.29 0.59 16 7 F -0.14 -1.38 17.26 2.25 0.04 -1.34 16 8 C -0.12 -1.06 9.64 -39.54 -0.38 -1.45 16 9 C -0.03 -0.28 5.41 -104.42 -0.56 -0.84 16 10 C 0.09 0.87 5.22 -4.98 -0.03 0.84 16 11 N -0.67 -7.44 6.44 -115.05 -0.74 -8.18 16 12 C 0.03 0.30 5.32 -3.83 -0.02 0.28 16 13 C 0.12 1.71 3.02 -26.73 -0.08 1.63 16 14 H 0.09 1.38 6.55 -51.93 -0.34 1.04 16 15 O -0.54 -8.68 13.15 -35.23 -0.46 -9.14 16 16 C 0.02 0.42 4.62 -3.82 -0.02 0.41 16 17 N -0.53 -11.58 4.62 -244.37 -1.13 -12.70 16 18 C 0.04 0.74 9.14 60.06 0.55 1.29 16 19 C 0.19 5.08 4.72 -4.98 -0.02 5.06 16 20 C -0.50 -14.40 8.46 -34.44 -0.29 -14.69 16 21 H 0.06 1.83 7.12 -52.48 -0.37 1.45 16 22 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 23 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 24 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 28 H 0.08 0.31 7.75 -51.92 -0.40 -0.10 16 29 H 0.09 0.35 7.75 -51.92 -0.40 -0.05 16 30 H 0.11 0.41 8.14 -51.92 -0.42 -0.02 16 31 H 0.13 0.67 5.88 -52.48 -0.31 0.37 16 32 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 33 H 0.14 1.16 8.04 -52.49 -0.42 0.74 16 34 H 0.09 0.74 8.01 -51.93 -0.42 0.33 16 35 H 0.05 0.45 7.25 -51.93 -0.38 0.07 16 36 H 0.35 3.97 7.79 -39.29 -0.31 3.67 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.37 5.01 9.05 45.56 0.41 5.42 16 40 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 41 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 42 H 0.05 0.84 6.47 -51.93 -0.34 0.50 16 43 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 44 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 45 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 46 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 398.10 15.07 6.00 6.00 Total: -1.00 -32.38 398.10 -10.60 -42.98 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.54 Total: 3.57 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -1.32 Total: -8.88 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -1.13 Total: -47.14 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.46 Total: -9.14 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: -0.82 SS G_CDS: -2.16 Total: -2.98 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.38 -10.60 -42.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516644654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.758 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds