Wall clock time and date at job start Wed Apr 1 2020 01:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76195 * 102.99929 * 2 1 4 4 C 1.38959 * 120.05809 * 359.97438 * 3 2 1 5 5 C 1.38079 * 119.94865 * 179.97438 * 4 3 2 6 6 C 1.38500 * 120.05209 * 359.97438 * 5 4 3 7 7 F 1.35099 * 119.94476 * 180.02562 * 6 5 4 8 8 C 1.38457 * 120.10953 * 0.03633 * 6 5 4 9 9 C 1.38124 * 120.05659 * 359.70888 * 8 6 5 10 10 C 1.50694 * 120.02625 * 180.27250 * 9 8 6 11 11 N 1.46906 * 109.47088 * 260.24975 * 10 9 8 12 12 C 1.46903 * 111.00005 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.46844 * 180.02562 * 12 11 10 14 14 H 1.09003 * 109.47389 * 304.99944 * 13 12 11 15 15 O 1.42904 * 109.47396 * 65.00514 * 13 12 11 16 16 C 1.53001 * 109.46913 * 185.00240 * 13 12 11 17 17 N 1.46903 * 109.47150 * 180.02562 * 16 13 12 18 18 C 1.46900 * 110.99710 * 293.95164 * 17 16 13 19 19 C 1.46898 * 111.00290 * 170.00040 * 17 16 13 20 20 C 1.50692 * 109.47372 * 189.99562 * 19 17 16 21 21 H 1.08004 * 120.00072 * 0.02562 * 20 19 17 22 22 C 1.37884 * 120.00331 * 179.97438 * 20 19 17 23 23 N 1.31515 * 119.99349 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47250 * 89.99912 * 24 22 20 26 26 H 1.48498 * 109.47093 * 209.99930 * 24 22 20 27 27 H 1.48501 * 109.46851 * 329.99850 * 24 22 20 28 28 H 1.09001 * 109.47190 * 299.99963 * 1 2 3 29 29 H 1.09004 * 109.47089 * 60.00096 * 1 2 3 30 30 H 1.09004 * 109.47568 * 180.02562 * 1 2 3 31 31 H 1.08006 * 120.02393 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.97396 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.96780 * 179.97438 * 8 6 5 34 34 H 1.09003 * 109.47811 * 20.25321 * 10 9 8 35 35 H 1.09005 * 109.47476 * 140.25606 * 10 9 8 36 36 H 1.00896 * 110.99894 * 303.95909 * 11 10 9 37 37 H 1.08997 * 109.47052 * 300.00631 * 12 11 10 38 38 H 1.09003 * 109.47148 * 60.00276 * 12 11 10 39 39 H 0.96698 * 114.00008 * 59.99453 * 15 13 12 40 40 H 1.08999 * 109.47144 * 299.99655 * 16 13 12 41 41 H 1.09001 * 109.47543 * 60.00105 * 16 13 12 42 42 H 1.09001 * 109.47189 * 60.00406 * 18 17 16 43 43 H 1.09002 * 109.47128 * 180.02562 * 18 17 16 44 44 H 1.08998 * 109.47511 * 300.00429 * 18 17 16 45 45 H 1.09004 * 109.46949 * 309.99852 * 19 17 16 46 46 H 1.09001 * 109.47025 * 69.99620 * 19 17 16 47 47 H 0.97005 * 119.99390 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1950 2.6655 -0.0005 5 6 1.5082 4.0103 0.0000 6 6 2.8330 4.4139 0.0016 7 9 3.1370 5.7303 0.0027 8 6 3.8465 3.4706 0.0019 9 6 3.5384 2.1242 0.0067 10 6 4.6420 1.0981 0.0133 11 7 4.8438 0.5873 -1.3493 12 6 5.9144 -0.4181 -1.3814 13 6 6.0952 -0.9248 -2.8137 14 1 5.1416 -1.2931 -3.1919 15 8 6.5557 0.1442 -3.6427 16 6 7.1218 -2.0593 -2.8274 17 7 7.2959 -2.5454 -4.2027 18 6 6.0665 -3.1805 -4.6961 19 6 8.4373 -3.4654 -4.2954 20 6 8.7373 -3.7495 -5.7446 21 1 8.1400 -3.2920 -6.5194 22 6 9.7749 -4.5926 -6.0815 23 7 10.5026 -5.1493 -5.1379 24 14 10.1472 -4.9441 -7.8779 25 1 11.1222 -3.9459 -8.3860 26 1 10.7218 -6.3074 -8.0068 27 1 8.8934 -4.8586 -8.6691 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.1617 2.3512 -0.0005 32 1 0.7193 4.7480 0.0000 33 1 4.8789 3.7879 0.0028 34 1 5.5639 1.5581 0.3691 35 1 4.3686 0.2746 0.6731 36 1 3.9858 0.2136 -1.7261 37 1 6.8452 0.0311 -1.0350 38 1 5.6495 -1.2519 -0.7313 39 1 7.4015 0.5214 -3.3645 40 1 8.0754 -1.6910 -2.4493 41 1 6.7707 -2.8748 -2.1951 42 1 5.2524 -2.4559 -4.6820 43 1 6.2232 -3.5318 -5.7160 44 1 5.8120 -4.0254 -4.0562 45 1 9.3097 -3.0105 -3.8261 46 1 8.1950 -4.3976 -3.7850 47 1 11.2328 -5.7422 -5.3750 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516644654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:12 Heat of formation + Delta-G solvation = -87.014240 kcal Electronic energy + Delta-G solvation = -26745.854514 eV Core-core repulsion = 22775.267028 eV Total energy + Delta-G solvation = -3970.587486 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.91113 -40.31174 -39.46151 -37.42055 -36.18874 -34.59923 -32.95712 -31.92808 -30.77739 -29.69058 -29.04218 -27.76987 -26.29378 -24.60846 -23.98737 -22.72136 -22.51695 -21.70512 -18.72567 -18.55617 -18.27626 -17.82321 -17.27423 -17.02475 -16.77254 -16.62170 -16.07590 -15.94951 -15.87674 -15.70749 -15.44252 -15.07043 -15.05421 -14.61812 -14.56265 -14.38452 -13.93719 -13.80570 -13.60631 -13.40206 -13.20227 -13.14237 -13.01855 -12.92382 -12.68277 -12.54878 -12.50735 -12.36539 -12.11474 -11.98439 -11.60867 -11.38606 -11.20382 -10.65609 -10.61064 -10.58540 -10.11235 -9.34642 -8.94264 -8.39583 -8.20173 -6.29737 -0.06759 0.11798 0.50761 1.41399 1.43156 1.43654 1.54203 2.34842 2.41098 3.00260 3.12228 3.21230 3.49213 3.60560 3.71988 3.77762 3.95399 4.06772 4.14348 4.21618 4.27422 4.29620 4.32287 4.41148 4.42583 4.50499 4.57815 4.69115 4.71452 4.73771 4.79588 4.79911 4.87642 5.02406 5.07751 5.07951 5.16293 5.18992 5.27349 5.32573 5.65538 5.75025 5.94141 6.06453 6.32637 6.35234 6.65338 6.86408 7.07023 7.39775 8.90746 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.018619 B = 0.001931 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.492644 B =14498.673308 C =15278.137538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.138 6.138 3 C -0.098 4.098 4 C -0.105 4.105 5 C -0.133 4.133 6 C 0.075 3.925 7 F -0.147 7.147 8 C -0.124 4.124 9 C -0.045 4.045 10 C 0.098 3.902 11 N -0.677 5.677 12 C 0.038 3.962 13 C 0.131 3.869 14 H 0.088 0.912 15 O -0.554 6.554 16 C 0.025 3.975 17 N -0.540 5.540 18 C 0.041 3.959 19 C 0.208 3.792 20 C -0.522 4.522 21 H 0.060 0.940 22 C 0.000 4.000 23 N -0.934 5.934 24 Si 0.969 3.031 25 H -0.273 1.273 26 H -0.281 1.281 27 H -0.265 1.265 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.121 0.879 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.146 0.854 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.344 0.656 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.378 0.622 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.011 0.989 45 H 0.004 0.996 46 H -0.039 1.039 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.953 16.156 16.141 32.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.104 5.896 3 C -0.211 4.211 4 C -0.128 4.128 5 C -0.153 4.153 6 C 0.054 3.946 7 F -0.125 7.125 8 C -0.145 4.145 9 C -0.051 4.051 10 C -0.031 4.031 11 N -0.308 5.308 12 C -0.092 4.092 13 C 0.071 3.929 14 H 0.106 0.894 15 O -0.359 6.359 16 C -0.105 4.105 17 N -0.263 5.263 18 C -0.107 4.107 19 C 0.081 3.919 20 C -0.561 4.561 21 H 0.079 0.921 22 C -0.198 4.198 23 N -0.575 5.575 24 Si 0.794 3.206 25 H -0.199 1.199 26 H -0.207 1.207 27 H -0.190 1.190 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.140 0.860 31 H 0.176 0.824 32 H 0.177 0.823 33 H 0.164 0.836 34 H 0.110 0.890 35 H 0.068 0.932 36 H 0.163 0.837 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.226 0.774 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.030 0.970 45 H 0.023 0.977 46 H -0.021 1.021 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.203 15.786 15.370 31.280 hybrid contribution -0.154 -0.464 0.541 0.729 sum -22.357 15.322 15.911 31.428 Atomic orbital electron populations 1.23855 0.91777 1.08559 1.06846 1.85758 1.09947 1.01877 1.92006 1.21862 0.96059 0.97842 1.05378 1.21280 0.99584 0.91549 1.00436 1.21298 0.94943 0.97367 1.01714 1.17872 0.94421 0.77554 1.04779 1.91488 1.94112 1.32825 1.94123 1.21096 1.00041 0.91733 1.01635 1.19297 0.92614 0.93762 0.99436 1.20882 0.96660 0.95276 0.90253 1.60447 1.10854 1.39425 1.20122 1.22566 0.96326 0.93950 0.96333 1.21694 0.96082 0.85534 0.89614 0.89411 1.86555 1.42482 1.50887 1.55970 1.22828 1.00145 0.97702 0.89791 1.61922 1.04695 1.39311 1.20420 1.22216 0.91866 0.96623 1.00037 1.19394 0.88253 0.88104 0.96106 1.21466 1.15010 1.26678 0.92903 0.92148 1.25919 0.95823 0.95618 1.02415 1.70084 1.20675 1.32248 1.34493 0.85380 0.78624 0.77386 0.79209 1.19859 1.20661 1.18970 0.88296 0.88584 0.86050 0.82363 0.82311 0.83607 0.88976 0.93222 0.83737 0.89614 0.93613 0.77406 0.91217 0.94980 0.90663 0.92721 0.97032 0.97747 1.02140 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.15 113.37 1.04 0.09 16 2 S -0.14 -1.99 20.10 -56.49 -1.14 -3.12 16 3 C -0.10 -1.57 6.11 22.61 0.14 -1.44 16 4 C -0.10 -1.33 9.36 22.40 0.21 -1.12 16 5 C -0.13 -1.81 10.02 22.29 0.22 -1.59 16 6 C 0.08 1.34 7.30 22.38 0.16 1.50 16 7 F -0.15 -2.88 17.26 44.97 0.78 -2.11 16 8 C -0.12 -2.24 9.64 22.30 0.21 -2.02 16 9 C -0.04 -0.81 5.41 -19.73 -0.11 -0.91 16 10 C 0.10 1.75 5.22 85.55 0.45 2.19 16 11 N -0.68 -14.25 6.44 -517.92 -3.34 -17.58 16 12 C 0.04 0.82 5.32 86.30 0.46 1.28 16 13 C 0.13 3.66 3.02 30.59 0.09 3.75 16 14 H 0.09 2.53 6.55 -2.39 -0.02 2.51 16 15 O -0.55 -17.42 13.15 -148.98 -1.96 -19.38 16 16 C 0.02 0.85 4.62 86.30 0.40 1.25 16 17 N -0.54 -23.78 4.62 -927.05 -4.28 -28.06 16 18 C 0.04 1.63 9.14 127.69 1.17 2.80 16 19 C 0.21 11.27 4.72 85.55 0.40 11.68 16 20 C -0.52 -30.29 8.46 25.60 0.22 -30.08 16 21 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 22 C 0.00 0.00 5.46 84.66 0.46 0.47 16 23 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 24 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 28 H 0.10 0.41 7.75 -2.39 -0.02 0.39 16 29 H 0.10 0.50 7.75 -2.39 -0.02 0.48 16 30 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.16 1.10 5.88 -2.91 -0.02 1.09 16 32 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.15 2.37 8.04 -2.91 -0.02 2.35 16 34 H 0.09 1.50 8.01 -2.39 -0.02 1.48 16 35 H 0.05 0.88 7.25 -2.38 -0.02 0.86 16 36 H 0.34 7.53 7.79 -89.70 -0.70 6.83 16 37 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.38 10.00 9.05 -74.06 -0.67 9.33 16 40 H 0.07 2.39 7.93 -2.39 -0.02 2.37 16 41 H 0.03 1.08 8.12 -2.39 -0.02 1.06 16 42 H 0.07 2.56 6.47 -2.39 -0.02 2.55 16 43 H 0.05 2.38 6.76 -2.39 -0.02 2.36 16 44 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.00 0.26 7.93 -2.38 -0.02 0.24 16 46 H -0.04 -2.29 8.12 -2.39 -0.02 -2.31 16 47 H 0.26 15.07 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -69.84 398.10 -2.48 -72.32 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -0.38 Total: 19.52 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 5.53 Total: -12.15 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -7.33 Total: -102.15 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -1.96 Total: -19.38 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.78 Total: -2.11 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: -1.99 SS G_CDS: -1.14 Total: -3.12 kcal Total: -69.84 -2.48 -72.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516644654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.698 kcal (2) G-P(sol) polarization free energy of solvation -69.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds