Wall clock time and date at job start Wed Apr 1 2020 00:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47075 * 2 1 4 4 C 1.50698 * 109.47718 * 239.99261 * 2 1 3 5 5 N 1.28007 * 120.00137 * 119.99971 * 4 2 1 6 6 N 1.40096 * 120.00111 * 180.02562 * 5 4 2 7 7 C 1.34775 * 119.99805 * 180.02562 * 6 5 4 8 8 O 1.21296 * 120.00230 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99773 * 179.97438 * 7 6 5 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 6 11 11 N 1.28733 * 125.33960 * 90.02264 * 10 9 7 12 12 N 1.28982 * 108.94051 * 179.97438 * 11 10 9 13 13 C 1.34047 * 107.27137 * 0.02562 * 12 11 10 14 14 C 1.48465 * 126.67230 * 180.02562 * 13 12 11 15 15 C 1.39301 * 120.11350 * 179.69884 * 14 13 12 16 16 C 1.38031 * 119.88037 * 179.70109 * 15 14 13 17 17 C 1.38317 * 120.11414 * 0.57127 * 16 15 14 18 18 C 1.38314 * 120.23843 * 359.72710 * 17 16 15 19 19 C 1.38030 * 120.11804 * 359.97184 * 18 17 16 20 20 N 1.28869 * 125.34000 * 269.72221 * 10 9 7 21 21 C 1.52999 * 109.46668 * 119.99355 * 2 1 3 22 22 C 1.50707 * 109.47495 * 295.00286 * 21 2 1 23 23 H 1.07995 * 119.99430 * 359.97438 * 22 21 2 24 24 C 1.37870 * 120.00369 * 180.02562 * 22 21 2 25 25 N 1.31525 * 119.99999 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00174 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47332 * 59.99751 * 26 24 22 28 28 H 1.48498 * 109.47399 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47265 * 299.99905 * 26 24 22 30 30 H 1.09000 * 109.47075 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47234 * 300.00423 * 1 2 3 32 32 H 1.09003 * 109.46468 * 60.00466 * 1 2 3 33 33 H 1.08005 * 119.99819 * 300.00478 * 4 2 1 34 34 H 0.96998 * 120.00029 * 359.97438 * 6 5 4 35 35 H 1.09001 * 109.47438 * 59.99564 * 9 7 6 36 36 H 1.09004 * 109.47113 * 299.99819 * 9 7 6 37 37 H 1.08009 * 120.06317 * 359.97438 * 15 14 13 38 38 H 1.07998 * 119.94490 * 180.29778 * 16 15 14 39 39 H 1.08003 * 119.88090 * 179.70065 * 17 16 15 40 40 H 1.07993 * 119.94182 * 179.97438 * 18 17 16 41 41 H 1.08001 * 120.06438 * 180.02562 * 19 18 17 42 42 H 1.09000 * 109.47576 * 55.00508 * 21 2 1 43 43 H 1.09008 * 109.47201 * 175.00239 * 21 2 1 44 44 H 0.96994 * 120.00168 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 -1.2303 5 7 2.7685 -0.0885 -2.0729 6 7 3.2352 -0.7489 -3.2170 7 6 4.0105 -0.0941 -4.1039 8 8 4.3038 1.0671 -3.9118 9 6 4.5130 -0.8047 -5.3342 10 7 5.3269 0.1161 -6.1318 11 7 6.5980 0.2807 -6.0122 12 7 6.9882 1.1631 -6.8682 13 6 5.9051 1.5633 -7.5491 14 6 5.8652 2.5702 -8.6394 15 6 4.6576 2.8795 -9.2611 16 6 4.6249 3.8209 -10.2701 17 6 5.7904 4.4481 -10.6720 18 6 6.9931 4.1401 -10.0622 19 6 7.0359 3.2048 -9.0481 20 7 4.8835 0.8842 -7.0667 21 6 2.0399 -0.7211 1.2493 22 6 1.6412 0.0573 2.4767 23 1 1.0805 0.9747 2.3756 24 6 1.9929 -0.4013 3.7284 25 7 2.6762 -1.5185 3.8514 26 14 1.4993 0.5638 5.2495 27 1 0.0194 0.6706 5.3094 28 1 1.9941 -0.1361 6.4621 29 1 2.0915 1.9243 5.1864 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 1.7716 -1.7446 -1.4011 34 1 3.0009 -1.6776 -3.3704 35 1 3.6653 -1.1471 -5.9278 36 1 5.1182 -1.6613 -5.0374 37 1 3.7477 2.3869 -8.9513 38 1 3.6885 4.0651 -10.7495 39 1 5.7613 5.1806 -11.4651 40 1 7.9002 4.6324 -10.3801 41 1 7.9754 2.9653 -8.5723 42 1 1.6054 -1.7197 1.2954 43 1 3.1263 -0.7994 1.2058 44 1 2.9233 -1.8413 4.7320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765992599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:14 Heat of formation + Delta-G solvation = 156.045646 kcal Electronic energy + Delta-G solvation = -27008.693783 eV Core-core repulsion = 22965.414925 eV Total energy + Delta-G solvation = -4043.278857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.55524 -39.94546 -39.39613 -37.24931 -35.36903 -34.94781 -33.79766 -32.66353 -31.75103 -31.30330 -30.87790 -28.93546 -27.04931 -24.79568 -24.67268 -23.87714 -22.61499 -21.90164 -21.82675 -21.03520 -19.46209 -18.36944 -18.23975 -17.57545 -16.91329 -16.58888 -16.18917 -16.15222 -15.74751 -15.20796 -14.59836 -14.49683 -14.33999 -14.02090 -13.78012 -13.53112 -13.44214 -13.31837 -13.23142 -12.79895 -12.36923 -12.03887 -11.77431 -11.69560 -11.54789 -11.45989 -11.26297 -11.17172 -11.11691 -10.95524 -10.85453 -10.51835 -10.37013 -10.12696 -9.84662 -9.64183 -9.33298 -9.17677 -8.97459 -8.74316 -8.41723 -6.06959 -4.09274 0.43375 0.94164 1.02339 1.34812 1.79298 2.17257 2.39528 2.66335 3.31028 3.35837 3.38427 3.39248 3.49827 3.81972 3.90385 4.21569 4.31775 4.41402 4.58863 4.68426 4.72870 4.98604 5.00613 5.12006 5.16058 5.19986 5.29814 5.40089 5.51733 5.65830 5.69284 5.83609 5.93924 6.03428 6.07123 6.09975 6.12520 6.32222 6.52538 6.67998 6.80001 6.87590 6.90333 7.36484 7.53231 7.64191 7.90379 8.05106 8.28054 8.32586 8.95449 9.54985 11.04371 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.020534 B = 0.001567 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.266791 B =17862.691622 C =18024.499841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.043 4.043 3 H 0.081 0.919 4 C 0.119 3.881 5 N -0.258 5.258 6 N -0.584 5.584 7 C 0.519 3.481 8 O -0.487 6.487 9 C 0.116 3.884 10 N -0.125 5.125 11 N -0.041 5.041 12 N -0.270 5.270 13 C 0.211 3.789 14 C -0.011 4.011 15 C -0.081 4.081 16 C -0.123 4.123 17 C -0.104 4.104 18 C -0.122 4.122 19 C -0.078 4.078 20 N -0.289 5.289 21 C 0.034 3.966 22 C -0.518 4.518 23 H 0.059 0.941 24 C 0.058 3.942 25 N -0.895 5.895 26 Si 0.893 3.107 27 H -0.276 1.276 28 H -0.288 1.288 29 H -0.276 1.276 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.105 0.895 34 H 0.382 0.618 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.022 0.978 43 H 0.019 0.981 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 1.477 -29.850 30.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.065 4.065 3 H 0.099 0.901 4 C -0.096 4.096 5 N -0.059 5.059 6 N -0.326 5.326 7 C 0.301 3.699 8 O -0.357 6.357 9 C -0.010 4.010 10 N -0.036 5.036 11 N -0.034 5.034 12 N -0.142 5.142 13 C -0.069 4.069 14 C -0.014 4.014 15 C -0.101 4.101 16 C -0.141 4.141 17 C -0.123 4.123 18 C -0.140 4.140 19 C -0.098 4.098 20 N -0.139 5.139 21 C -0.004 4.004 22 C -0.557 4.557 23 H 0.078 0.922 24 C -0.143 4.143 25 N -0.534 5.534 26 Si 0.721 3.279 27 H -0.202 1.202 28 H -0.213 1.213 29 H -0.202 1.202 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.123 0.877 34 H 0.220 0.780 35 H 0.167 0.833 36 H 0.170 0.830 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.154 0.846 42 H 0.040 0.960 43 H 0.037 0.963 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.760 2.547 -29.406 29.754 hybrid contribution -0.890 -0.807 0.710 1.396 sum 2.870 1.740 -28.696 28.891 Atomic orbital electron populations 1.21675 0.94101 1.01519 1.01306 1.20452 0.95645 1.00289 0.90087 0.90070 1.26886 0.90789 0.97927 0.93963 1.74759 1.12825 1.23645 0.94698 1.46811 1.51083 1.13623 1.21066 1.19889 0.79161 0.87591 0.83263 1.90849 1.54442 1.15852 1.74584 1.21941 0.97509 0.90291 0.91252 1.49243 1.05439 1.26880 1.21990 1.78964 0.94799 1.13095 1.16575 1.76016 1.25045 1.08206 1.04893 1.23577 0.85198 0.99008 0.99076 1.17270 0.95027 0.95430 0.93670 1.21217 0.96971 0.96879 0.95062 1.21107 0.98778 0.96771 0.97451 1.21345 0.92637 0.98988 0.99280 1.21115 0.98442 0.98013 0.96479 1.21227 0.97656 0.94879 0.96061 1.74850 1.26665 1.07489 1.04866 1.19128 0.96532 0.95561 0.89181 1.21111 1.35411 1.08532 0.90610 0.92243 1.24996 0.95076 0.95068 0.99175 1.69944 1.38583 1.21132 1.23751 0.86632 0.78886 0.80159 0.82197 1.20176 1.21337 1.20181 0.93037 0.90591 0.94547 0.87742 0.77998 0.83260 0.82967 0.84967 0.85275 0.85569 0.85198 0.84617 0.95990 0.96293 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.99 37.16 0.33 -1.77 16 2 C -0.04 -0.82 2.75 -91.77 -0.25 -1.07 16 3 H 0.08 1.66 8.11 -51.93 -0.42 1.24 16 4 C 0.12 1.88 9.66 -13.87 -0.13 1.74 16 5 N -0.26 -4.36 10.92 32.67 0.36 -4.00 16 6 N -0.58 -7.15 6.25 31.22 0.20 -6.96 16 7 C 0.52 6.78 8.02 -10.98 -0.09 6.69 16 8 O -0.49 -9.30 16.77 5.54 0.09 -9.20 16 9 C 0.12 0.90 7.08 -5.19 -0.04 0.87 16 10 N -0.13 -1.54 3.48 -11.67 -0.04 -1.58 16 11 N -0.04 -0.58 13.23 60.35 0.80 0.22 16 12 N -0.27 -3.89 12.23 32.16 0.39 -3.50 16 13 C 0.21 2.79 7.94 -156.30 -1.24 1.55 16 14 C -0.01 -0.12 5.88 -104.89 -0.62 -0.73 16 15 C -0.08 -0.74 9.70 -39.26 -0.38 -1.12 16 16 C -0.12 -0.87 10.03 -39.63 -0.40 -1.27 16 17 C -0.10 -0.66 10.04 -39.52 -0.40 -1.06 16 18 C -0.12 -0.86 10.03 -39.63 -0.40 -1.26 16 19 C -0.08 -0.72 9.70 -39.26 -0.38 -1.10 16 20 N -0.29 -3.76 11.85 32.17 0.38 -3.38 16 21 C 0.03 0.81 4.43 -27.88 -0.12 0.69 16 22 C -0.52 -13.73 8.41 -34.44 -0.29 -14.02 16 23 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 24 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 25 N -0.90 -25.83 13.29 55.43 0.74 -25.09 16 26 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.35 6.95 -51.93 -0.36 0.99 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.11 1.30 8.00 -52.48 -0.42 0.88 16 34 H 0.38 2.81 8.63 -182.60 -1.58 1.23 16 35 H 0.15 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.15 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.13 1.15 7.88 -52.48 -0.41 0.73 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 39 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 40 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 41 H 0.14 1.20 7.89 -52.49 -0.41 0.78 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 392.84 15.07 5.92 5.92 Total: -1.00 -37.44 392.84 -7.60 -45.04 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -6.92 Total: -3.11 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -4.50 Total: -10.35 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 2.82 Total: -44.29 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.44 -7.60 -45.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765992599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.085 kcal (2) G-P(sol) polarization free energy of solvation -37.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds