Wall clock time and date at job start Wed Apr 1 2020 01:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46895 * 111.00356 * 2 1 4 4 C 1.50694 * 109.47428 * 293.95765 * 3 2 1 5 5 H 1.08004 * 120.00044 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00334 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99702 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00108 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47090 * 179.97438 * 8 6 4 10 10 H 1.48500 * 109.47327 * 299.99616 * 8 6 4 11 11 H 1.48499 * 109.47312 * 59.99907 * 8 6 4 12 12 C 1.46902 * 110.99749 * 123.95753 * 2 1 3 13 13 H 1.09001 * 110.43154 * 188.58263 * 12 2 1 14 14 C 1.54624 * 110.48798 * 66.04711 * 12 2 1 15 15 C 1.54481 * 101.76699 * 216.52559 * 14 12 2 16 16 N 1.46766 * 105.47310 * 25.41036 * 15 14 12 17 17 C 1.39825 * 124.35234 * 162.98533 * 16 15 14 18 18 C 1.38969 * 119.95010 * 354.00226 * 17 16 15 19 19 C 1.37873 * 120.04535 * 179.76256 * 18 17 16 20 20 C 1.39367 * 119.95397 * 0.51074 * 19 18 17 21 21 C 1.48419 * 120.04859 * 179.76339 * 20 19 18 22 22 N 1.34058 * 126.67593 * 179.65956 * 21 20 19 23 23 N 1.28983 * 107.26515 * 179.87284 * 22 21 20 24 24 N 1.28723 * 108.94869 * 0.40263 * 23 22 21 25 25 H 0.97001 * 125.33864 * 179.74551 * 24 23 22 26 26 N 1.28872 * 109.32594 * 359.74491 * 24 23 22 27 27 C 1.39359 * 119.90009 * 359.74376 * 20 19 18 28 28 C 1.37873 * 119.95719 * 359.97438 * 27 20 19 29 29 C 1.34426 * 111.29848 * 342.99062 * 16 15 14 30 30 O 1.21293 * 124.94012 * 180.44257 * 29 16 15 31 31 H 1.09007 * 109.47016 * 59.99789 * 1 2 3 32 32 H 1.08995 * 109.47499 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47057 * 300.00202 * 1 2 3 34 34 H 1.08999 * 109.47168 * 173.95250 * 3 2 1 35 35 H 1.09003 * 109.46854 * 53.95799 * 3 2 1 36 36 H 0.96997 * 119.99841 * 180.02562 * 7 6 4 37 37 H 1.09008 * 110.96735 * 334.63801 * 14 12 2 38 38 H 1.08993 * 110.97324 * 98.36492 * 14 12 2 39 39 H 1.08998 * 110.25078 * 144.41297 * 15 14 12 40 40 H 1.09005 * 110.24419 * 266.41535 * 15 14 12 41 41 H 1.07998 * 119.97974 * 0.02562 * 18 17 16 42 42 H 1.08003 * 120.02514 * 180.25213 * 19 18 17 43 43 H 1.08007 * 120.01933 * 180.02562 * 27 20 19 44 44 H 1.08001 * 119.97600 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2983 5 1 1.0746 1.5113 -2.0487 6 6 2.0278 3.3491 -1.5288 7 7 2.7131 4.0014 -0.6152 8 14 1.5840 4.1865 -3.1385 9 1 2.1162 5.5730 -3.1384 10 1 2.1757 3.4288 -4.2703 11 1 0.1068 4.2239 -3.2863 12 6 1.9954 -0.7661 1.1376 13 1 3.0747 -0.6359 1.2172 14 6 1.6403 -2.2639 0.9920 15 6 1.3691 -2.6673 2.4584 16 7 0.9681 -1.4295 3.1373 17 6 0.3120 -1.3833 4.3712 18 6 -0.1123 -2.5604 4.9758 19 6 -0.7551 -2.5175 6.1948 20 6 -0.9887 -1.2917 6.8156 21 6 -1.6851 -1.2427 8.1253 22 7 -1.9715 -0.1449 8.8393 23 7 -2.5804 -0.5317 9.9086 24 7 -2.6763 -1.8152 9.8938 25 1 -3.0897 -2.3549 10.5857 26 7 -2.1371 -2.2709 8.8157 27 6 -0.5670 -0.1122 6.2048 28 6 0.0806 -0.1600 4.9886 29 6 1.3124 -0.3458 2.4203 30 8 1.1062 0.8020 2.7537 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 3.0798 1.3443 0.1083 35 1 1.5612 1.9272 0.8310 36 1 2.9877 4.9175 -0.7772 37 1 0.7480 -2.3956 0.3799 38 1 2.4791 -2.8256 0.5811 39 1 0.5644 -3.4010 2.5052 40 1 2.2746 -3.0701 2.9124 41 1 0.0653 -3.5097 4.4926 42 1 -1.0811 -3.4328 6.6664 43 1 -0.7467 0.8387 6.6844 44 1 0.4079 0.7539 4.5152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821597721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:21 Heat of formation + Delta-G solvation = 142.929823 kcal Electronic energy + Delta-G solvation = -28941.045299 eV Core-core repulsion = 24897.197697 eV Total energy + Delta-G solvation = -4043.847602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.65850 -41.22080 -38.99160 -36.51367 -36.17134 -34.57072 -33.78181 -32.64230 -31.55198 -31.17027 -28.99474 -27.53978 -27.04965 -25.14441 -24.72989 -24.39579 -22.83373 -22.20892 -21.28883 -20.70396 -19.42112 -19.20747 -17.65432 -17.35329 -16.95634 -16.67412 -16.22267 -15.52165 -15.08677 -14.81078 -14.46328 -14.28913 -14.05102 -13.95343 -13.81517 -13.52497 -13.39979 -13.09855 -12.78373 -12.41336 -12.39303 -12.11652 -11.90634 -11.84386 -11.59560 -11.51283 -11.28514 -11.23261 -11.17430 -11.03896 -10.83183 -10.62143 -10.41020 -9.96588 -9.86276 -9.69675 -9.20548 -9.13261 -8.40017 -7.92445 -7.32369 -5.97225 -3.99274 0.53017 0.97439 1.26678 2.00025 2.09908 2.73251 2.80691 3.36329 3.40472 3.42712 3.51360 3.74441 3.99951 4.27721 4.44205 4.49625 4.70281 4.80346 4.86430 5.01228 5.05167 5.12337 5.18457 5.24304 5.31661 5.38597 5.40565 5.51669 5.56731 5.85899 5.90918 5.97958 6.06950 6.09558 6.11171 6.15667 6.30024 6.35148 6.44353 6.68363 6.94960 7.02944 7.19132 7.51133 7.75223 7.92985 7.95978 8.14406 8.22620 8.50205 9.06856 9.63608 11.13395 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.002314 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.431394 B =12096.952154 C =13221.764397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.507 5.507 3 C 0.183 3.817 4 C -0.511 4.511 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.278 1.278 12 C 0.056 3.944 13 H 0.118 0.882 14 C -0.125 4.125 15 C 0.096 3.904 16 N -0.566 5.566 17 C 0.202 3.798 18 C -0.171 4.171 19 C -0.048 4.048 20 C -0.064 4.064 21 C 0.233 3.767 22 N -0.270 5.270 23 N -0.051 5.051 24 N -0.231 5.231 25 H 0.474 0.526 26 N -0.302 5.302 27 C -0.040 4.040 28 C -0.164 4.164 29 C 0.488 3.512 30 O -0.482 6.482 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.022 0.978 34 H 0.028 0.972 35 H 0.020 0.980 36 H 0.262 0.738 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.138 0.862 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.185 -19.591 16.886 26.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.231 5.231 3 C 0.059 3.941 4 C -0.549 4.549 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.203 1.203 12 C -0.058 4.058 13 H 0.135 0.865 14 C -0.163 4.163 15 C -0.026 4.026 16 N -0.290 5.290 17 C 0.105 3.895 18 C -0.192 4.192 19 C -0.069 4.069 20 C -0.068 4.068 21 C -0.046 4.046 22 N -0.144 5.144 23 N -0.047 5.047 24 N -0.077 5.077 25 H 0.328 0.672 26 N -0.154 5.154 27 C -0.061 4.061 28 C -0.184 4.184 29 C 0.276 3.724 30 O -0.354 6.354 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.156 0.844 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.273 -18.648 17.126 26.343 hybrid contribution -0.606 0.257 0.136 0.672 sum -7.879 -18.391 17.262 26.425 Atomic orbital electron populations 1.22392 0.88578 0.99333 1.02053 1.62598 1.07427 1.19289 1.33740 1.19948 0.95374 0.81006 0.97800 1.21067 1.35279 0.97080 1.01522 0.92024 1.24976 0.95347 0.97296 0.96922 1.69964 1.38025 1.11433 1.33907 0.86569 0.78675 0.78395 0.83783 1.21373 1.20206 1.20331 1.22712 1.01107 0.94783 0.87171 0.86469 1.22758 1.04266 0.95145 0.94142 1.22310 1.00937 0.86054 0.93330 1.46244 1.55100 1.09773 1.17913 1.18106 0.92050 0.94505 0.84851 1.20651 1.04464 0.96987 0.97073 1.20835 0.95677 0.96644 0.93738 1.17146 1.04796 0.94846 0.90037 1.23715 0.99366 0.84257 0.97296 1.76119 1.13171 1.25286 0.99776 1.78907 1.14064 0.94930 1.16774 1.47701 1.38082 1.05684 1.16220 0.67225 1.74916 1.15977 1.26774 0.97737 1.21076 0.93839 0.97561 0.93629 1.21691 1.02112 0.98773 0.95867 1.22823 0.78572 0.84364 0.86688 1.90667 1.53128 1.19482 1.72094 0.90086 0.93504 0.95931 0.95382 0.96238 0.92869 0.88966 0.88430 0.89786 0.90110 0.84981 0.84842 0.84370 0.81827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 8.63 60.06 0.52 1.00 16 2 N -0.51 -10.45 4.74 -236.36 -1.12 -11.57 16 3 C 0.18 4.79 4.40 -4.98 -0.02 4.77 16 4 C -0.51 -14.37 8.51 -34.44 -0.29 -14.67 16 5 H 0.06 1.69 7.10 -52.48 -0.37 1.32 16 6 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 7 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 C 0.06 0.91 3.00 -67.73 -0.20 0.71 16 13 H 0.12 1.89 7.93 -51.93 -0.41 1.48 16 14 C -0.13 -1.36 6.67 -25.10 -0.17 -1.53 16 15 C 0.10 0.89 6.51 -3.12 -0.02 0.87 16 16 N -0.57 -7.64 3.13 -112.24 -0.35 -7.99 16 17 C 0.20 2.68 6.60 -83.67 -0.55 2.12 16 18 C -0.17 -1.75 9.40 -39.44 -0.37 -2.13 16 19 C -0.05 -0.49 9.69 -39.29 -0.38 -0.87 16 20 C -0.06 -0.76 5.88 -104.87 -0.62 -1.37 16 21 C 0.23 2.75 7.93 -156.30 -1.24 1.51 16 22 N -0.27 -3.42 12.23 32.15 0.39 -3.03 16 23 N -0.05 -0.53 13.47 60.35 0.81 0.28 16 24 N -0.23 -1.68 7.90 60.35 0.48 -1.20 16 25 H 0.47 1.01 8.96 -340.37 -3.05 -2.04 16 26 N -0.30 -2.93 12.08 32.17 0.39 -2.55 16 27 C -0.04 -0.52 9.69 -39.30 -0.38 -0.91 16 28 C -0.16 -2.41 9.27 -39.45 -0.37 -2.78 16 29 C 0.49 8.51 5.97 -10.86 -0.06 8.45 16 30 O -0.48 -10.44 12.20 5.55 0.07 -10.37 16 31 H 0.08 1.67 6.86 -51.93 -0.36 1.32 16 32 H 0.05 0.73 6.22 -51.93 -0.32 0.41 16 33 H 0.02 0.47 6.54 -51.93 -0.34 0.13 16 34 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 35 H 0.02 0.58 6.51 -51.93 -0.34 0.24 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.09 1.02 6.17 -51.92 -0.32 0.70 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.58 7.21 -51.93 -0.37 0.21 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.13 0.99 6.72 -52.49 -0.35 0.64 16 42 H 0.13 1.09 7.88 -52.48 -0.41 0.68 16 43 H 0.14 1.72 7.88 -52.48 -0.41 1.31 16 44 H 0.16 2.85 5.23 -52.49 -0.27 2.58 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -35.56 361.23 -10.16 -45.72 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -7.73 Total: -1.88 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -4.26 Total: -3.30 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 1.34 Total: -52.42 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.37 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.56 -10.16 -45.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821597721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.651 kcal (2) G-P(sol) polarization free energy of solvation -35.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds