Wall clock time and date at job start Wed Apr 1 2020 01:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.36935 * 119.99818 * 2 1 4 4 H 1.08001 * 119.99933 * 205.27404 * 3 2 1 5 5 C 1.38814 * 120.00068 * 25.28036 * 3 2 1 6 6 N 1.31615 * 120.00052 * 14.49402 * 5 3 2 7 7 Si 1.86804 * 120.00108 * 194.49384 * 5 3 2 8 8 H 1.48499 * 109.46754 * 89.99738 * 7 5 3 9 9 H 1.48496 * 109.47359 * 209.99818 * 7 5 3 10 10 H 1.48500 * 109.47027 * 330.00272 * 7 5 3 11 11 C 1.46498 * 119.99717 * 180.02562 * 2 1 3 12 12 H 1.08995 * 109.40371 * 5.85310 * 11 2 1 13 13 C 1.53069 * 109.39679 * 246.02280 * 11 2 1 14 14 C 1.53338 * 108.43113 * 288.85931 * 13 11 2 15 15 C 1.52925 * 108.67478 * 292.47310 * 14 13 11 16 16 N 1.45747 * 110.48870 * 50.75115 * 15 14 13 17 17 C 1.39820 * 117.94929 * 160.92727 * 16 15 14 18 18 C 1.38970 * 119.95195 * 273.25898 * 17 16 15 19 19 C 1.37884 * 120.04644 * 179.76485 * 18 17 16 20 20 C 1.39362 * 119.95165 * 0.48225 * 19 18 17 21 21 C 1.48418 * 120.04680 * 179.74277 * 20 19 18 22 22 N 1.34055 * 126.67539 * 180.02562 * 21 20 19 23 23 N 1.28994 * 107.26648 * 179.97438 * 22 21 20 24 24 N 1.28728 * 108.94638 * 0.02562 * 23 22 21 25 25 H 0.97002 * 125.33900 * 179.97438 * 24 23 22 26 26 N 1.28877 * 109.32268 * 359.75104 * 24 23 22 27 27 C 1.39356 * 119.90540 * 359.77295 * 20 19 18 28 28 C 1.37879 * 119.95578 * 359.97438 * 27 20 19 29 29 C 1.33356 * 124.10596 * 341.20508 * 16 15 14 30 30 O 1.21285 * 118.24837 * 181.94645 * 29 16 15 31 31 H 1.08996 * 109.46794 * 174.26814 * 1 2 3 32 32 H 1.09005 * 109.46932 * 294.26754 * 1 2 3 33 33 H 1.08996 * 109.46728 * 54.26414 * 1 2 3 34 34 H 0.97006 * 119.99866 * 180.02562 * 6 5 3 35 35 H 1.09005 * 109.66973 * 169.12454 * 13 11 2 36 36 H 1.09005 * 109.67314 * 48.59851 * 13 11 2 37 37 H 1.09002 * 109.60728 * 172.71176 * 14 13 11 38 38 H 1.09004 * 109.60298 * 52.22781 * 14 13 11 39 39 H 1.08998 * 109.29772 * 290.43383 * 15 14 13 40 40 H 1.08998 * 109.29968 * 171.06409 * 15 14 13 41 41 H 1.07998 * 119.97633 * 0.02562 * 18 17 16 42 42 H 1.07998 * 120.02297 * 180.25353 * 19 18 17 43 43 H 1.08002 * 120.02734 * 179.97438 * 27 20 19 44 44 H 1.08001 * 119.97702 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1522 1.2307 -0.3993 5 6 1.5553 2.3305 0.5134 6 7 0.4692 2.2340 1.2503 7 14 2.2971 4.0078 0.1583 8 1 1.7034 4.5579 -1.0867 9 1 2.0113 4.9252 1.2904 10 1 3.7663 3.8734 -0.0113 11 6 2.1975 -1.2687 -0.0006 12 1 1.4929 -2.0936 -0.1058 13 6 2.9598 -1.4163 1.3186 14 6 4.1238 -0.4181 1.3201 15 6 5.1367 -0.8454 0.2571 16 7 4.4711 -1.0734 -1.0193 17 6 5.2549 -1.0691 -2.1772 18 6 5.5198 0.1280 -2.8314 19 6 6.2966 0.1350 -3.9706 20 6 6.8079 -1.0607 -4.4715 21 6 7.6395 -1.0563 -5.7008 22 7 8.1950 -2.1215 -6.2955 23 7 8.8337 -1.6923 -7.3308 24 7 8.7001 -0.4140 -7.4040 25 1 9.0846 0.1518 -8.0917 26 7 7.9716 -0.0045 -6.4229 27 6 6.5366 -2.2607 -3.8168 28 6 5.7638 -2.2626 -2.6750 29 6 3.1605 -1.2805 -1.1527 30 8 2.7233 -1.4948 -2.2636 31 1 -0.3633 -1.0225 -0.1026 32 1 -0.3633 0.4224 0.9369 33 1 -0.3633 0.6002 -0.8342 34 1 0.0536 3.0339 1.6088 35 1 3.3468 -2.4314 1.4072 36 1 2.2925 -1.2032 2.1538 37 1 4.6014 -0.4146 2.2999 38 1 3.7503 0.5796 1.0893 39 1 5.6281 -1.7644 0.5765 40 1 5.8858 -0.0626 0.1380 41 1 5.1204 1.0540 -2.4449 42 1 6.5055 1.0661 -4.4764 43 1 6.9315 -3.1886 -4.2035 44 1 5.5530 -3.1925 -2.1676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825887435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:13 Heat of formation + Delta-G solvation = 160.778856 kcal Electronic energy + Delta-G solvation = -29904.951234 eV Core-core repulsion = 25861.877624 eV Total energy + Delta-G solvation = -4043.073610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.62162 -40.62334 -38.65372 -36.15377 -35.56009 -34.48630 -33.66811 -32.50966 -31.02604 -30.95018 -29.19877 -28.21470 -26.05115 -24.98404 -24.73768 -23.92937 -22.47181 -22.28190 -21.67285 -20.90749 -19.38735 -18.33740 -17.31314 -17.20021 -16.98062 -16.43250 -15.74913 -15.47929 -14.90003 -14.52199 -14.38841 -14.05830 -13.71646 -13.61741 -13.48747 -13.29466 -12.96475 -12.89782 -12.67139 -12.33018 -12.12754 -11.90875 -11.68583 -11.55126 -11.45344 -11.13881 -11.07712 -11.03058 -10.95092 -10.71690 -10.67054 -10.49900 -10.24433 -9.93296 -9.56562 -9.14850 -8.95337 -8.63750 -8.57145 -8.37921 -6.83879 -5.74822 -3.34736 0.59487 1.02415 1.42897 2.04351 2.23594 3.22252 3.30689 3.37327 3.38944 3.41942 3.55619 3.77881 4.04042 4.40374 4.95143 5.00227 5.10338 5.21779 5.26587 5.28307 5.30774 5.39106 5.51596 5.54160 5.59011 5.63419 5.68392 5.88476 5.93894 6.05652 6.10362 6.21633 6.29832 6.38765 6.41413 6.53254 6.60808 6.66137 6.69089 6.82992 7.20471 7.24145 7.27306 7.65070 7.80910 7.90217 7.96151 8.31438 8.82012 9.09590 9.71094 10.20255 11.17687 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.015493 B = 0.003098 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.797270 B = 9035.059301 C = 9935.681266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.136 3.864 2 N -0.575 5.575 3 C -0.255 4.255 4 H 0.071 0.929 5 C 0.009 3.991 6 N -0.894 5.894 7 Si 0.900 3.100 8 H -0.287 1.287 9 H -0.289 1.289 10 H -0.278 1.278 11 C 0.168 3.832 12 H 0.085 0.915 13 C -0.126 4.126 14 C -0.156 4.156 15 C 0.124 3.876 16 N -0.573 5.573 17 C 0.176 3.824 18 C -0.113 4.113 19 C -0.070 4.070 20 C -0.032 4.032 21 C 0.229 3.771 22 N -0.270 5.270 23 N -0.053 5.053 24 N -0.230 5.230 25 H 0.474 0.526 26 N -0.296 5.296 27 C -0.068 4.068 28 C -0.114 4.114 29 C 0.524 3.476 30 O -0.547 6.547 31 H 0.009 0.991 32 H 0.079 0.921 33 H 0.014 0.986 34 H 0.254 0.746 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.125 0.875 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.006 -6.003 -7.420 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.298 5.298 3 C -0.384 4.384 4 H 0.089 0.911 5 C -0.191 4.191 6 N -0.537 5.537 7 Si 0.730 3.270 8 H -0.213 1.213 9 H -0.216 1.216 10 H -0.203 1.203 11 C 0.056 3.944 12 H 0.103 0.897 13 C -0.166 4.166 14 C -0.193 4.193 15 C 0.002 3.998 16 N -0.305 5.305 17 C 0.085 3.915 18 C -0.132 4.132 19 C -0.091 4.091 20 C -0.035 4.035 21 C -0.050 4.050 22 N -0.143 5.143 23 N -0.048 5.048 24 N -0.076 5.076 25 H 0.328 0.672 26 N -0.147 5.147 27 C -0.089 4.089 28 C -0.133 4.133 29 C 0.312 3.688 30 O -0.422 6.422 31 H 0.028 0.972 32 H 0.097 0.903 33 H 0.032 0.968 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.143 0.857 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 14.935 -6.262 -8.367 18.229 hybrid contribution 0.410 1.642 -0.387 1.736 sum 15.345 -4.620 -8.753 18.261 Atomic orbital electron populations 1.21329 0.81764 0.95371 1.02324 1.43770 1.01850 0.99291 1.84872 1.18990 0.99820 0.85685 1.33868 0.91119 1.25004 0.98019 0.98382 0.97652 1.69910 1.21540 1.27602 1.34672 0.86322 0.78828 0.84229 0.77630 1.21345 1.21554 1.20278 1.20329 0.92069 0.91688 0.90267 0.89702 1.22117 0.97830 0.97079 0.99576 1.22357 0.95297 1.05048 0.96599 1.21423 0.95642 1.00024 0.82689 1.45317 1.06973 1.72769 1.05452 1.17904 0.92180 0.92827 0.88627 1.21392 0.98041 0.98671 0.95144 1.20998 0.95725 0.97080 0.95275 1.17198 1.00035 0.94995 0.91285 1.23731 0.99319 0.84341 0.97605 1.76084 1.10283 1.25526 1.02406 1.78886 1.16837 0.94206 1.14895 1.47717 1.32970 1.06451 1.20436 0.67155 1.74974 1.12261 1.26814 1.00662 1.20966 0.96763 0.97052 0.94134 1.21235 0.97713 0.97941 0.96414 1.21771 0.81062 0.73543 0.92414 1.90633 1.75978 1.48389 1.27239 0.97179 0.90274 0.96759 0.93518 0.93428 0.90638 0.91557 0.85697 0.92669 0.91543 0.84725 0.84828 0.84569 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 3.28 9.53 59.85 0.57 3.85 16 2 N -0.58 -13.83 2.83 -175.07 -0.50 -14.33 16 3 C -0.25 -6.44 6.54 -15.06 -0.10 -6.54 16 4 H 0.07 1.77 6.18 -52.49 -0.32 1.45 16 5 C 0.01 0.24 5.23 -17.43 -0.09 0.15 16 6 N -0.89 -24.33 10.61 55.49 0.59 -23.74 16 7 Si 0.90 20.79 29.58 -169.99 -5.03 15.76 16 8 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 9 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 11 C 0.17 3.43 3.10 -69.31 -0.22 3.22 16 12 H 0.09 1.67 7.56 -51.93 -0.39 1.27 16 13 C -0.13 -2.17 5.63 -26.52 -0.15 -2.32 16 14 C -0.16 -2.55 5.73 -26.59 -0.15 -2.71 16 15 C 0.12 1.80 6.35 -4.49 -0.03 1.78 16 16 N -0.57 -9.92 2.79 -114.63 -0.32 -10.24 16 17 C 0.18 2.85 4.00 -83.67 -0.34 2.52 16 18 C -0.11 -1.77 9.95 -39.44 -0.39 -2.16 16 19 C -0.07 -0.96 9.69 -39.29 -0.38 -1.34 16 20 C -0.03 -0.43 5.88 -104.87 -0.62 -1.04 16 21 C 0.23 2.96 7.93 -156.30 -1.24 1.72 16 22 N -0.27 -3.49 12.23 32.15 0.39 -3.10 16 23 N -0.05 -0.57 13.47 60.35 0.81 0.24 16 24 N -0.23 -1.89 7.90 60.35 0.48 -1.42 16 25 H 0.47 1.50 8.96 -340.36 -3.05 -1.55 16 26 N -0.30 -3.31 12.08 32.17 0.39 -2.92 16 27 C -0.07 -0.89 9.69 -39.30 -0.38 -1.27 16 28 C -0.11 -1.61 9.95 -39.44 -0.39 -2.00 16 29 C 0.52 10.84 5.90 -11.88 -0.07 10.77 16 30 O -0.55 -13.16 16.71 5.55 0.09 -13.07 16 31 H 0.01 0.20 7.56 -51.93 -0.39 -0.19 16 32 H 0.08 2.04 6.00 -51.93 -0.31 1.73 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 35 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 36 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.13 2.53 4.21 -51.93 -0.22 2.31 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 41 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 42 H 0.13 1.62 7.88 -52.49 -0.41 1.20 16 43 H 0.14 1.54 7.88 -52.49 -0.41 1.13 16 44 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -32.40 364.05 -9.61 -42.01 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -8.03 Total: 0.70 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -3.97 Total: 4.62 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 1.84 Total: -55.51 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.40 -9.61 -42.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825887435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.791 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds