Wall clock time and date at job start Wed Apr 1 2020 01:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.36935 * 119.99818 * 2 1 4 4 H 1.08001 * 119.99933 * 205.27404 * 3 2 1 5 5 C 1.38814 * 120.00068 * 25.28036 * 3 2 1 6 6 N 1.31615 * 120.00052 * 14.49402 * 5 3 2 7 7 Si 1.86804 * 120.00108 * 194.49384 * 5 3 2 8 8 H 1.48499 * 109.46754 * 89.99738 * 7 5 3 9 9 H 1.48496 * 109.47359 * 209.99818 * 7 5 3 10 10 H 1.48500 * 109.47027 * 330.00272 * 7 5 3 11 11 C 1.46498 * 119.99717 * 180.02562 * 2 1 3 12 12 H 1.08995 * 109.40371 * 5.85310 * 11 2 1 13 13 C 1.53069 * 109.39679 * 246.02280 * 11 2 1 14 14 C 1.53338 * 108.43113 * 288.85931 * 13 11 2 15 15 C 1.52925 * 108.67478 * 292.47310 * 14 13 11 16 16 N 1.45747 * 110.48870 * 50.75115 * 15 14 13 17 17 C 1.39820 * 117.94929 * 160.92727 * 16 15 14 18 18 C 1.38970 * 119.95195 * 273.25898 * 17 16 15 19 19 C 1.37884 * 120.04644 * 179.76485 * 18 17 16 20 20 C 1.39362 * 119.95165 * 0.48225 * 19 18 17 21 21 C 1.48418 * 120.04680 * 179.74277 * 20 19 18 22 22 N 1.34055 * 126.67539 * 180.02562 * 21 20 19 23 23 N 1.28994 * 107.26648 * 179.97438 * 22 21 20 24 24 N 1.28728 * 108.94638 * 0.02562 * 23 22 21 25 25 H 0.97002 * 125.33900 * 179.97438 * 24 23 22 26 26 N 1.28877 * 109.32268 * 359.75104 * 24 23 22 27 27 C 1.39356 * 119.90540 * 359.77295 * 20 19 18 28 28 C 1.37879 * 119.95578 * 359.97438 * 27 20 19 29 29 C 1.33356 * 124.10596 * 341.20508 * 16 15 14 30 30 O 1.21285 * 118.24837 * 181.94645 * 29 16 15 31 31 H 1.08996 * 109.46794 * 174.26814 * 1 2 3 32 32 H 1.09005 * 109.46932 * 294.26754 * 1 2 3 33 33 H 1.08996 * 109.46728 * 54.26414 * 1 2 3 34 34 H 0.97006 * 119.99866 * 180.02562 * 6 5 3 35 35 H 1.09005 * 109.66973 * 169.12454 * 13 11 2 36 36 H 1.09005 * 109.67314 * 48.59851 * 13 11 2 37 37 H 1.09002 * 109.60728 * 172.71176 * 14 13 11 38 38 H 1.09004 * 109.60298 * 52.22781 * 14 13 11 39 39 H 1.08998 * 109.29772 * 290.43383 * 15 14 13 40 40 H 1.08998 * 109.29968 * 171.06409 * 15 14 13 41 41 H 1.07998 * 119.97633 * 0.02562 * 18 17 16 42 42 H 1.07998 * 120.02297 * 180.25353 * 19 18 17 43 43 H 1.08002 * 120.02734 * 179.97438 * 27 20 19 44 44 H 1.08001 * 119.97702 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1522 1.2307 -0.3993 5 6 1.5553 2.3305 0.5134 6 7 0.4692 2.2340 1.2503 7 14 2.2971 4.0078 0.1583 8 1 1.7034 4.5579 -1.0867 9 1 2.0113 4.9252 1.2904 10 1 3.7663 3.8734 -0.0113 11 6 2.1975 -1.2687 -0.0006 12 1 1.4929 -2.0936 -0.1058 13 6 2.9598 -1.4163 1.3186 14 6 4.1238 -0.4181 1.3201 15 6 5.1367 -0.8454 0.2571 16 7 4.4711 -1.0734 -1.0193 17 6 5.2549 -1.0691 -2.1772 18 6 5.5198 0.1280 -2.8314 19 6 6.2966 0.1350 -3.9706 20 6 6.8079 -1.0607 -4.4715 21 6 7.6395 -1.0563 -5.7008 22 7 8.1950 -2.1215 -6.2955 23 7 8.8337 -1.6923 -7.3308 24 7 8.7001 -0.4140 -7.4040 25 1 9.0846 0.1518 -8.0917 26 7 7.9716 -0.0045 -6.4229 27 6 6.5366 -2.2607 -3.8168 28 6 5.7638 -2.2626 -2.6750 29 6 3.1605 -1.2805 -1.1527 30 8 2.7233 -1.4948 -2.2636 31 1 -0.3633 -1.0225 -0.1026 32 1 -0.3633 0.4224 0.9369 33 1 -0.3633 0.6002 -0.8342 34 1 0.0536 3.0339 1.6088 35 1 3.3468 -2.4314 1.4072 36 1 2.2925 -1.2032 2.1538 37 1 4.6014 -0.4146 2.2999 38 1 3.7503 0.5796 1.0893 39 1 5.6281 -1.7644 0.5765 40 1 5.8858 -0.0626 0.1380 41 1 5.1204 1.0540 -2.4449 42 1 6.5055 1.0661 -4.4764 43 1 6.9315 -3.1886 -4.2035 44 1 5.5530 -3.1925 -2.1676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825887435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:12 Heat of formation + Delta-G solvation = 140.234221 kcal Electronic energy + Delta-G solvation = -29905.842116 eV Core-core repulsion = 25861.877624 eV Total energy + Delta-G solvation = -4043.964492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.48518 -42.02225 -39.88832 -37.82209 -37.02296 -35.42812 -34.83217 -33.89634 -32.62651 -32.11143 -30.37194 -29.78296 -28.01114 -26.06936 -25.76753 -25.30126 -23.61341 -23.47680 -23.34150 -22.17535 -20.22900 -19.76294 -18.83998 -18.43743 -18.16333 -17.57520 -17.25547 -16.86872 -16.56846 -15.89371 -15.76972 -15.30683 -15.25628 -14.96204 -14.78983 -14.45453 -14.29995 -14.08154 -13.99126 -13.84755 -13.57866 -13.38286 -13.05601 -12.87534 -12.79619 -12.53674 -12.43364 -12.42771 -12.20607 -12.17449 -12.05975 -11.98528 -11.89495 -11.63473 -11.21355 -10.81861 -10.49364 -10.03942 -9.81558 -9.60109 -8.76609 -7.71633 -5.33133 -0.41923 0.13799 0.34089 1.21778 1.39938 1.44014 1.48497 1.53903 1.65607 2.06837 2.51055 2.61999 2.69150 3.11661 3.31035 3.67913 3.88722 3.93107 3.95015 4.02355 4.13190 4.18290 4.26471 4.30496 4.38293 4.46145 4.50716 4.62081 4.71334 4.79644 4.92989 4.97526 4.99714 5.12971 5.19906 5.28078 5.31884 5.40243 5.47575 5.54342 5.59700 5.63451 5.77786 5.87291 5.97536 6.36174 6.46117 7.08631 7.11020 7.30286 7.79969 8.26053 9.19804 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.015493 B = 0.003098 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.797270 B = 9035.059301 C = 9935.681266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.146 3.854 2 N -0.591 5.591 3 C -0.242 4.242 4 H 0.071 0.929 5 C -0.042 4.042 6 N -0.923 5.923 7 Si 0.951 3.049 8 H -0.298 1.298 9 H -0.291 1.291 10 H -0.262 1.262 11 C 0.159 3.841 12 H 0.088 0.912 13 C -0.116 4.116 14 C -0.153 4.153 15 C 0.121 3.879 16 N -0.564 5.564 17 C 0.149 3.851 18 C -0.128 4.128 19 C -0.067 4.067 20 C -0.030 4.030 21 C 0.215 3.785 22 N -0.289 5.289 23 N -0.054 5.054 24 N -0.200 5.200 25 H 0.495 0.505 26 N -0.297 5.297 27 C -0.062 4.062 28 C -0.111 4.111 29 C 0.522 3.478 30 O -0.591 6.591 31 H 0.035 0.965 32 H 0.062 0.938 33 H -0.014 1.014 34 H 0.248 0.752 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.121 0.879 42 H 0.147 0.853 43 H 0.155 0.845 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.879 -7.003 -8.040 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.314 5.314 3 C -0.372 4.372 4 H 0.089 0.911 5 C -0.238 4.238 6 N -0.569 5.569 7 Si 0.780 3.220 8 H -0.226 1.226 9 H -0.218 1.218 10 H -0.186 1.186 11 C 0.049 3.951 12 H 0.106 0.894 13 C -0.156 4.156 14 C -0.190 4.190 15 C 0.001 3.999 16 N -0.294 5.294 17 C 0.058 3.942 18 C -0.147 4.147 19 C -0.087 4.087 20 C -0.033 4.033 21 C -0.065 4.065 22 N -0.162 5.162 23 N -0.049 5.049 24 N -0.051 5.051 25 H 0.354 0.646 26 N -0.149 5.149 27 C -0.083 4.083 28 C -0.130 4.130 29 C 0.311 3.689 30 O -0.470 6.470 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.005 0.995 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.139 0.861 42 H 0.165 0.835 43 H 0.172 0.828 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 17.892 -7.274 -8.986 21.302 hybrid contribution -0.355 1.900 -0.342 1.963 sum 17.537 -5.373 -9.328 20.578 Atomic orbital electron populations 1.21114 0.82426 0.96158 1.00208 1.43934 1.01893 1.00449 1.85131 1.19144 0.99548 0.86317 1.32192 0.91102 1.25600 0.98795 1.01026 0.98370 1.70050 1.22887 1.27671 1.36271 0.85507 0.78974 0.80977 0.76580 1.22555 1.21759 1.18640 1.20582 0.92506 0.90037 0.91983 0.89388 1.21994 0.97523 0.99392 0.96677 1.22222 0.95577 1.02408 0.98785 1.21650 0.95104 1.02298 0.80879 1.45212 1.06154 1.71020 1.07010 1.18090 0.93309 0.93856 0.88940 1.21340 0.99119 0.98106 0.96133 1.21063 0.95142 0.97940 0.94593 1.17319 0.99555 0.94977 0.91439 1.23633 1.00107 0.84840 0.97927 1.76067 1.10989 1.26019 1.03094 1.78837 1.16703 0.94961 1.14416 1.47777 1.31287 1.06117 1.19875 0.64617 1.74935 1.12382 1.26563 1.01016 1.21157 0.95977 0.97697 0.93466 1.21342 0.97402 0.97632 0.96643 1.21593 0.82269 0.73484 0.91548 1.90605 1.77035 1.50729 1.28581 0.94670 0.92055 0.99504 0.94188 0.89796 0.92105 0.88663 0.89679 0.89007 0.90215 0.86131 0.83539 0.82759 0.83767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.22 9.53 127.77 1.22 8.44 16 2 N -0.59 -28.86 2.83 -707.79 -2.00 -30.86 16 3 C -0.24 -12.46 6.54 84.03 0.55 -11.91 16 4 H 0.07 3.59 6.18 -2.91 -0.02 3.58 16 5 C -0.04 -2.23 5.23 84.86 0.44 -1.78 16 6 N -0.92 -51.81 10.61 21.65 0.23 -51.58 16 7 Si 0.95 43.46 29.58 68.60 2.03 45.49 16 8 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 9 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 10 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 11 C 0.16 6.42 3.10 44.10 0.14 6.56 16 12 H 0.09 3.42 7.56 -2.39 -0.02 3.40 16 13 C -0.12 -3.78 5.63 30.73 0.17 -3.61 16 14 C -0.15 -4.68 5.73 30.68 0.18 -4.50 16 15 C 0.12 3.19 6.35 86.50 0.55 3.74 16 16 N -0.56 -18.71 2.79 -635.75 -1.77 -20.48 16 17 C 0.15 4.64 4.00 38.22 0.15 4.79 16 18 C -0.13 -3.91 9.95 22.36 0.22 -3.69 16 19 C -0.07 -1.75 9.69 22.46 0.22 -1.53 16 20 C -0.03 -0.74 5.88 -20.02 -0.12 -0.86 16 21 C 0.21 5.09 7.93 137.36 1.09 6.18 16 22 N -0.29 -6.88 12.23 -52.20 -0.64 -7.52 16 23 N -0.05 -1.04 13.47 37.02 0.50 -0.54 16 24 N -0.20 -2.75 7.90 37.02 0.29 -2.46 16 25 H 0.49 1.66 8.96 -347.53 -3.12 -1.46 16 26 N -0.30 -5.93 12.08 -52.15 -0.63 -6.56 16 27 C -0.06 -1.49 9.69 22.45 0.22 -1.27 16 28 C -0.11 -2.92 9.95 22.36 0.22 -2.70 16 29 C 0.52 21.34 5.90 87.71 0.52 21.86 16 30 O -0.59 -28.60 16.71 -3.05 -0.05 -28.65 16 31 H 0.03 1.51 7.56 -2.39 -0.02 1.49 16 32 H 0.06 3.29 6.00 -2.38 -0.01 3.27 16 33 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 34 H 0.25 13.66 8.31 -92.70 -0.77 12.89 16 35 H 0.08 2.14 8.13 -2.38 -0.02 2.12 16 36 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 37 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.09 3.38 4.21 -2.38 -0.01 3.37 16 39 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.08 1.93 8.08 -2.39 -0.02 1.91 16 41 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 42 H 0.15 3.35 7.88 -2.91 -0.02 3.33 16 43 H 0.15 3.11 7.88 -2.91 -0.02 3.08 16 44 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -71.74 364.05 1.67 -70.08 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -2.05 Total: 13.39 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: 5.77 Total: 19.71 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -4.03 Total: -120.01 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.05 Total: -28.65 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -71.74 1.67 -70.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825887435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.310 kcal (2) G-P(sol) polarization free energy of solvation -71.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds