Wall clock time and date at job start Wed Apr 1 2020 00:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47750 * 2 1 4 4 N 1.46497 * 109.47007 * 239.99924 * 2 1 3 5 5 C 1.34776 * 120.00125 * 85.00597 * 4 2 1 6 6 O 1.21583 * 119.99680 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00134 * 180.02562 * 5 4 2 8 8 C 1.39956 * 119.99863 * 174.81487 * 7 5 4 9 9 C 1.39287 * 119.94334 * 146.37880 * 8 7 5 10 10 C 1.38493 * 120.42867 * 179.97438 * 9 8 7 11 11 C 1.37680 * 120.31896 * 0.02562 * 10 9 8 12 12 C 1.40741 * 119.88515 * 359.97438 * 11 10 9 13 13 C 1.41408 * 120.21053 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00014 * 151.78898 * 13 12 11 15 15 C 1.39934 * 120.00118 * 331.79418 * 13 12 11 16 16 N 1.30827 * 119.99527 * 348.98569 * 15 13 12 17 17 Si 1.86802 * 120.00097 * 168.98997 * 15 13 12 18 18 H 1.48503 * 109.46838 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47099 * 119.99948 * 17 15 13 20 20 H 1.48500 * 109.46770 * 239.99795 * 17 15 13 21 21 C 1.38224 * 119.94984 * 326.10025 * 8 7 5 22 22 C 1.50704 * 109.47131 * 120.00341 * 2 1 3 23 23 N 1.31069 * 126.66252 * 74.67725 * 22 2 1 24 24 N 1.28844 * 107.99365 * 179.89796 * 23 22 2 25 25 N 1.28738 * 109.39398 * 0.38194 * 24 23 22 26 26 N 1.29015 * 108.80887 * 359.76396 * 25 24 23 27 27 C 1.46508 * 126.43736 * 179.97438 * 26 25 24 28 28 C 1.52995 * 117.49994 * 8.77509 * 27 26 25 29 29 C 1.52994 * 117.49910 * 300.11317 * 27 26 25 30 30 H 1.09005 * 109.46837 * 299.99983 * 1 2 3 31 31 H 1.09000 * 109.47008 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46889 * 59.99652 * 1 2 3 33 33 H 0.97014 * 120.00101 * 264.99917 * 4 2 1 34 34 H 0.97003 * 120.00099 * 354.81592 * 7 5 4 35 35 H 1.08001 * 119.79273 * 359.97438 * 9 8 7 36 36 H 1.07997 * 119.84290 * 180.02562 * 10 9 8 37 37 H 1.07999 * 120.05549 * 179.97438 * 11 10 9 38 38 H 0.97008 * 119.99496 * 180.02562 * 16 15 13 39 39 H 1.08001 * 120.16166 * 0.02642 * 21 8 7 40 40 H 1.09007 * 115.54672 * 154.44161 * 27 26 25 41 41 H 1.09001 * 117.49848 * 359.97438 * 28 27 26 42 42 H 1.08995 * 117.50115 * 145.01681 * 28 27 26 43 43 H 1.09003 * 117.49595 * 214.97490 * 29 27 26 44 44 H 1.09000 * 117.50405 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8576 1.1613 -2.4118 7 7 2.5959 -0.6538 -3.4577 8 6 2.6271 0.0139 -4.6873 9 6 3.6364 -0.2668 -5.6054 10 6 3.6767 0.3875 -6.8253 11 6 2.7188 1.3237 -7.1438 12 6 1.6930 1.6177 -6.2261 13 6 0.7060 2.5785 -6.5459 14 1 -0.2819 2.5013 -6.1164 15 6 1.0092 3.6292 -7.4190 16 7 2.2500 3.8510 -7.7694 17 14 -0.3576 4.7151 -8.0839 18 1 -1.6616 4.2585 -7.5396 19 1 -0.1153 6.1219 -7.6750 20 1 -0.3824 4.6277 -9.5661 21 6 1.6532 0.9465 -4.9912 22 6 2.0324 -0.7105 1.2305 23 7 2.0313 -2.0039 1.4426 24 7 2.5429 -2.2169 2.6057 25 7 2.8630 -1.0923 3.1444 26 7 2.5637 -0.1397 2.3275 27 6 2.7641 1.2942 2.5519 28 6 3.5714 1.7105 3.7831 29 6 2.0564 1.9271 3.7516 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 2.2491 -1.6319 -1.1526 34 1 2.8972 -1.5739 -3.3975 35 1 4.3924 -0.9994 -5.3644 36 1 4.4632 0.1622 -7.5302 37 1 2.7545 1.8317 -8.0962 38 1 2.4602 4.5796 -8.3744 39 1 0.8679 1.1618 -4.2817 40 1 2.8695 1.9006 1.6522 41 1 3.9531 0.9177 4.4263 42 1 4.2076 2.5910 3.6936 43 1 1.6966 2.9501 3.6415 44 1 1.4413 1.2769 4.3738 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836761959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:41:00 Heat of formation + Delta-G solvation = 145.504753 kcal Electronic energy + Delta-G solvation = -28742.178829 eV Core-core repulsion = 24698.442884 eV Total energy + Delta-G solvation = -4043.735945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.53837 -40.13139 -38.38550 -37.62393 -36.03273 -34.40001 -34.04881 -33.13180 -32.37162 -30.30592 -29.79753 -27.79945 -25.74004 -25.29806 -25.05457 -23.29179 -22.77055 -21.76011 -21.12936 -20.80361 -20.11712 -18.60170 -17.95843 -17.70352 -17.30118 -16.42439 -15.75416 -15.38066 -15.21654 -15.14084 -14.71816 -14.43764 -14.05028 -13.81476 -13.77139 -13.32862 -12.97522 -12.86289 -12.71551 -12.52652 -12.34315 -12.27086 -12.11575 -11.93204 -11.69057 -11.40124 -11.31368 -11.28234 -11.11593 -10.79060 -10.65012 -10.48562 -10.33076 -10.20631 -9.75596 -9.64016 -9.28561 -9.16520 -8.92462 -7.40269 -6.87142 -6.64945 -4.33044 0.79125 1.41879 1.88303 2.66476 2.79879 2.89066 2.94312 3.11025 3.16884 3.20730 3.37750 3.63057 3.68157 3.95914 3.98847 4.09378 4.17615 4.44861 4.69050 4.71766 4.82776 4.93042 4.98317 5.05337 5.23265 5.36604 5.37899 5.40644 5.59178 5.72840 5.78996 5.99661 6.23218 6.30725 6.40146 6.70286 6.76227 7.05053 7.10520 7.24996 7.33202 7.68061 7.79558 8.00029 8.11563 8.24913 8.27132 8.37738 8.68227 8.86028 8.97662 9.01418 10.28393 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.015101 B = 0.002434 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.691551 B =11499.898386 C =12412.975183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.254 3.746 3 H 0.112 0.888 4 N -0.743 5.743 5 C 0.703 3.297 6 O -0.561 6.561 7 N -0.677 5.677 8 C 0.166 3.834 9 C -0.259 4.259 10 C -0.094 4.094 11 C -0.168 4.168 12 C 0.119 3.881 13 C -0.457 4.457 14 H 0.076 0.924 15 C 0.073 3.927 16 N -0.801 5.801 17 Si 0.910 3.090 18 H -0.261 1.261 19 H -0.275 1.275 20 H -0.273 1.273 21 C -0.206 4.206 22 C 0.184 3.816 23 N -0.293 5.293 24 N -0.074 5.074 25 N -0.094 5.094 26 N -0.271 5.271 27 C 0.041 3.959 28 C -0.152 4.152 29 C -0.160 4.160 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.403 0.597 34 H 0.396 0.604 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.278 0.722 39 H 0.108 0.892 40 H 0.165 0.835 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 -3.324 18.316 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.145 3.855 3 H 0.130 0.870 4 N -0.402 5.402 5 C 0.403 3.597 6 O -0.436 6.436 7 N -0.323 5.323 8 C 0.074 3.926 9 C -0.280 4.280 10 C -0.113 4.113 11 C -0.188 4.188 12 C 0.115 3.885 13 C -0.487 4.487 14 H 0.095 0.905 15 C -0.143 4.143 16 N -0.428 5.428 17 Si 0.735 3.265 18 H -0.185 1.185 19 H -0.201 1.201 20 H -0.199 1.199 21 C -0.228 4.228 22 C -0.095 4.095 23 N -0.143 5.143 24 N -0.067 5.067 25 N -0.080 5.080 26 N -0.071 5.071 27 C -0.062 4.062 28 C -0.190 4.190 29 C -0.198 4.198 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.238 0.762 34 H 0.230 0.770 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.139 0.861 38 H 0.089 0.911 39 H 0.126 0.874 40 H 0.182 0.818 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.361 -3.260 18.920 19.203 hybrid contribution -0.196 0.441 -0.577 0.752 sum 0.166 -2.819 18.343 18.559 Atomic orbital electron populations 1.22232 0.92094 1.03790 1.03843 1.18924 0.95030 0.95015 0.76566 0.87031 1.45037 1.73028 1.13999 1.08094 1.15842 0.78892 0.85100 0.79824 1.91001 1.55371 1.13567 1.83706 1.42553 1.67164 1.15801 1.06777 1.17216 0.96049 0.96562 0.82796 1.20036 1.01096 1.09196 0.97721 1.20471 0.98337 0.97148 0.95326 1.21410 0.97557 0.99167 1.00665 1.17510 0.91976 0.89932 0.89033 1.19566 0.98693 1.07265 1.23164 0.90542 1.25878 0.96095 0.97778 0.94578 1.69817 1.18591 1.27057 1.27316 0.86232 0.81772 0.79471 0.79032 1.18491 1.20060 1.19855 1.20985 1.00606 1.03647 0.97530 1.26165 0.99520 0.90419 0.93403 1.74980 1.17755 1.11239 1.10335 1.78644 1.11397 1.15164 1.01481 1.78830 1.18886 0.92081 1.18161 1.47842 1.38832 1.08856 1.11563 1.22542 1.11016 0.74846 0.97843 1.23474 0.94780 1.04259 0.96500 1.23573 0.95985 1.03003 0.97284 0.91481 0.91126 0.89400 0.76226 0.77025 0.89325 0.89019 0.86093 0.91129 0.87380 0.81752 0.86511 0.86076 0.85884 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.47 37.16 0.35 -1.28 16 2 C 0.25 2.81 2.96 -69.08 -0.20 2.60 16 3 H 0.11 1.21 6.42 -51.93 -0.33 0.88 16 4 N -0.74 -9.39 5.07 -59.81 -0.30 -9.70 16 5 C 0.70 12.04 8.26 -86.92 -0.72 11.32 16 6 O -0.56 -11.89 13.72 5.29 0.07 -11.82 16 7 N -0.68 -11.76 5.35 -14.27 -0.08 -11.84 16 8 C 0.17 3.67 6.26 -83.76 -0.52 3.15 16 9 C -0.26 -5.62 9.97 -39.10 -0.39 -6.01 16 10 C -0.09 -2.17 10.02 -39.69 -0.40 -2.56 16 11 C -0.17 -4.37 8.66 -38.84 -0.34 -4.70 16 12 C 0.12 3.21 5.55 -106.85 -0.59 2.61 16 13 C -0.46 -12.35 9.06 -37.74 -0.34 -12.69 16 14 H 0.08 2.01 7.87 -52.49 -0.41 1.60 16 15 C 0.07 1.86 5.25 -17.34 -0.09 1.77 16 16 N -0.80 -20.99 10.81 55.55 0.60 -20.39 16 17 Si 0.91 18.97 29.57 -169.99 -5.03 13.94 16 18 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 C -0.21 -5.21 8.39 -38.69 -0.32 -5.53 16 22 C 0.18 2.06 6.91 -155.43 -1.07 0.98 16 23 N -0.29 -3.85 12.10 32.70 0.40 -3.45 16 24 N -0.07 -1.02 13.43 60.35 0.81 -0.21 16 25 N -0.09 -1.14 12.69 60.35 0.77 -0.38 16 26 N -0.27 -2.73 3.67 -51.80 -0.19 -2.92 16 27 C 0.04 0.27 6.59 -67.93 -0.45 -0.18 16 28 C -0.15 -0.73 10.16 -26.70 -0.27 -1.00 16 29 C -0.16 -0.72 10.46 -26.70 -0.28 -1.00 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.40 4.46 8.40 -40.81 -0.34 4.12 16 34 H 0.40 5.38 8.83 -40.82 -0.36 5.02 16 35 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 36 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.12 3.24 6.18 -52.49 -0.32 2.91 16 38 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 39 H 0.11 2.80 6.44 -52.49 -0.34 2.46 16 40 H 0.17 0.85 7.23 -51.92 -0.38 0.48 16 41 H 0.12 0.68 7.85 -51.93 -0.41 0.27 16 42 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.12 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 378.18 15.07 5.70 5.70 Total: -1.00 -32.97 378.18 -8.31 -41.27 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -5.41 Total: 12.31 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -5.64 Total: -12.53 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 2.00 Total: -48.88 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.07 Total: -11.82 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.97 -8.31 -41.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836761959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.778 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds