Wall clock time and date at job start Wed Apr 1 2020 00:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47750 * 2 1 4 4 N 1.46497 * 109.47007 * 239.99924 * 2 1 3 5 5 C 1.34776 * 120.00125 * 85.00597 * 4 2 1 6 6 O 1.21583 * 119.99680 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00134 * 180.02562 * 5 4 2 8 8 C 1.39956 * 119.99863 * 174.81487 * 7 5 4 9 9 C 1.39287 * 119.94334 * 146.37880 * 8 7 5 10 10 C 1.38493 * 120.42867 * 179.97438 * 9 8 7 11 11 C 1.37680 * 120.31896 * 0.02562 * 10 9 8 12 12 C 1.40741 * 119.88515 * 359.97438 * 11 10 9 13 13 C 1.41408 * 120.21053 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00014 * 151.78898 * 13 12 11 15 15 C 1.39934 * 120.00118 * 331.79418 * 13 12 11 16 16 N 1.30827 * 119.99527 * 348.98569 * 15 13 12 17 17 Si 1.86802 * 120.00097 * 168.98997 * 15 13 12 18 18 H 1.48503 * 109.46838 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47099 * 119.99948 * 17 15 13 20 20 H 1.48500 * 109.46770 * 239.99795 * 17 15 13 21 21 C 1.38224 * 119.94984 * 326.10025 * 8 7 5 22 22 C 1.50704 * 109.47131 * 120.00341 * 2 1 3 23 23 N 1.31069 * 126.66252 * 74.67725 * 22 2 1 24 24 N 1.28844 * 107.99365 * 179.89796 * 23 22 2 25 25 N 1.28738 * 109.39398 * 0.38194 * 24 23 22 26 26 N 1.29015 * 108.80887 * 359.76396 * 25 24 23 27 27 C 1.46508 * 126.43736 * 179.97438 * 26 25 24 28 28 C 1.52995 * 117.49994 * 8.77509 * 27 26 25 29 29 C 1.52994 * 117.49910 * 300.11317 * 27 26 25 30 30 H 1.09005 * 109.46837 * 299.99983 * 1 2 3 31 31 H 1.09000 * 109.47008 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46889 * 59.99652 * 1 2 3 33 33 H 0.97014 * 120.00101 * 264.99917 * 4 2 1 34 34 H 0.97003 * 120.00099 * 354.81592 * 7 5 4 35 35 H 1.08001 * 119.79273 * 359.97438 * 9 8 7 36 36 H 1.07997 * 119.84290 * 180.02562 * 10 9 8 37 37 H 1.07999 * 120.05549 * 179.97438 * 11 10 9 38 38 H 0.97008 * 119.99496 * 180.02562 * 16 15 13 39 39 H 1.08001 * 120.16166 * 0.02642 * 21 8 7 40 40 H 1.09007 * 115.54672 * 154.44161 * 27 26 25 41 41 H 1.09001 * 117.49848 * 359.97438 * 28 27 26 42 42 H 1.08995 * 117.50115 * 145.01681 * 28 27 26 43 43 H 1.09003 * 117.49595 * 214.97490 * 29 27 26 44 44 H 1.09000 * 117.50405 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8576 1.1613 -2.4118 7 7 2.5959 -0.6538 -3.4577 8 6 2.6271 0.0139 -4.6873 9 6 3.6364 -0.2668 -5.6054 10 6 3.6767 0.3875 -6.8253 11 6 2.7188 1.3237 -7.1438 12 6 1.6930 1.6177 -6.2261 13 6 0.7060 2.5785 -6.5459 14 1 -0.2819 2.5013 -6.1164 15 6 1.0092 3.6292 -7.4190 16 7 2.2500 3.8510 -7.7694 17 14 -0.3576 4.7151 -8.0839 18 1 -1.6616 4.2585 -7.5396 19 1 -0.1153 6.1219 -7.6750 20 1 -0.3824 4.6277 -9.5661 21 6 1.6532 0.9465 -4.9912 22 6 2.0324 -0.7105 1.2305 23 7 2.0313 -2.0039 1.4426 24 7 2.5429 -2.2169 2.6057 25 7 2.8630 -1.0923 3.1444 26 7 2.5637 -0.1397 2.3275 27 6 2.7641 1.2942 2.5519 28 6 3.5714 1.7105 3.7831 29 6 2.0564 1.9271 3.7516 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 2.2491 -1.6319 -1.1526 34 1 2.8972 -1.5739 -3.3975 35 1 4.3924 -0.9994 -5.3644 36 1 4.4632 0.1622 -7.5302 37 1 2.7545 1.8317 -8.0962 38 1 2.4602 4.5796 -8.3744 39 1 0.8679 1.1618 -4.2817 40 1 2.8695 1.9006 1.6522 41 1 3.9531 0.9177 4.4263 42 1 4.2076 2.5910 3.6936 43 1 1.6966 2.9501 3.6415 44 1 1.4413 1.2769 4.3738 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836761959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:59 Heat of formation + Delta-G solvation = 123.788961 kcal Electronic energy + Delta-G solvation = -28743.120496 eV Core-core repulsion = 24698.442884 eV Total energy + Delta-G solvation = -4044.677612 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.43841 -41.55548 -39.29693 -38.91847 -37.29497 -36.08241 -34.87159 -34.80460 -33.49540 -31.70038 -31.37466 -29.45312 -27.21062 -26.52821 -25.99876 -24.12263 -23.50322 -22.92477 -22.63915 -22.08241 -21.59095 -19.74654 -19.52571 -18.77585 -18.16533 -17.80596 -17.14958 -16.65274 -16.45292 -16.24451 -16.22186 -16.00635 -15.18922 -15.01553 -14.71893 -14.57775 -14.47848 -14.15805 -13.92889 -13.57380 -13.49818 -13.31021 -13.17252 -13.08649 -12.82282 -12.80649 -12.60437 -12.52054 -12.26327 -12.18009 -11.99009 -11.76185 -11.61230 -11.54675 -11.32822 -11.06049 -11.02343 -10.70106 -10.40824 -9.31644 -8.65891 -8.53024 -6.33558 -0.07222 0.66995 0.91388 0.95725 1.05724 1.39597 1.50978 1.54708 1.59881 2.11334 2.25098 2.44816 2.53469 2.80709 3.02749 3.18689 3.39251 3.57019 3.68230 3.78431 3.90640 3.99802 4.12558 4.33304 4.49256 4.53408 4.61290 4.65127 4.66475 4.70838 4.88674 5.03990 5.04382 5.07729 5.13090 5.16145 5.16522 5.18850 5.25042 5.37988 5.69634 5.85616 6.06345 6.14722 6.17990 6.40526 6.74153 6.97335 6.99663 7.05924 7.34246 7.51315 8.41564 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.015101 B = 0.002434 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.691551 B =11499.898386 C =12412.975183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.257 3.743 3 H 0.117 0.883 4 N -0.724 5.724 5 C 0.706 3.294 6 O -0.602 6.602 7 N -0.668 5.668 8 C 0.175 3.825 9 C -0.249 4.249 10 C -0.093 4.093 11 C -0.194 4.194 12 C 0.088 3.912 13 C -0.497 4.497 14 H 0.067 0.933 15 C 0.032 3.968 16 N -0.832 5.832 17 Si 0.984 3.016 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.261 1.261 21 C -0.227 4.227 22 C 0.184 3.816 23 N -0.308 5.308 24 N -0.102 5.102 25 N -0.097 5.097 26 N -0.258 5.258 27 C 0.010 3.990 28 C -0.145 4.145 29 C -0.144 4.144 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.413 0.587 34 H 0.417 0.583 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.105 0.895 38 H 0.286 0.714 39 H 0.092 0.908 40 H 0.179 0.821 41 H 0.105 0.895 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.774 -3.205 19.351 19.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.148 3.852 3 H 0.135 0.865 4 N -0.382 5.382 5 C 0.406 3.594 6 O -0.480 6.480 7 N -0.316 5.316 8 C 0.081 3.919 9 C -0.270 4.270 10 C -0.112 4.112 11 C -0.214 4.214 12 C 0.085 3.915 13 C -0.528 4.528 14 H 0.085 0.915 15 C -0.181 4.181 16 N -0.459 5.459 17 Si 0.805 3.195 18 H -0.185 1.185 19 H -0.192 1.192 20 H -0.186 1.186 21 C -0.249 4.249 22 C -0.095 4.095 23 N -0.158 5.158 24 N -0.095 5.095 25 N -0.082 5.082 26 N -0.059 5.059 27 C -0.092 4.092 28 C -0.182 4.182 29 C -0.182 4.182 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.250 0.750 34 H 0.255 0.745 35 H 0.147 0.853 36 H 0.139 0.861 37 H 0.123 0.877 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.196 0.804 41 H 0.123 0.877 42 H 0.162 0.838 43 H 0.166 0.834 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.916 -3.205 20.012 20.288 hybrid contribution -0.264 0.336 -0.737 0.852 sum 0.652 -2.869 19.276 19.499 Atomic orbital electron populations 1.22174 0.91282 1.03894 1.04046 1.19025 0.95566 0.94966 0.75687 0.86535 1.44835 1.71816 1.14302 1.07273 1.15898 0.78324 0.84620 0.80553 1.90987 1.56946 1.15620 1.84483 1.42323 1.67224 1.16629 1.05460 1.17232 0.94823 0.95397 0.84400 1.20444 1.01089 1.08845 0.96626 1.20820 0.97995 0.95928 0.96475 1.21365 0.98930 1.00897 1.00255 1.17844 0.92817 0.90736 0.90078 1.19769 0.98689 1.08947 1.25370 0.91485 1.26712 0.98593 0.98656 0.94159 1.69870 1.20302 1.27922 1.27848 0.85139 0.78275 0.77459 0.78668 1.18482 1.19156 1.18577 1.20950 1.01612 1.05397 0.96971 1.25982 0.99800 0.90021 0.93654 1.74904 1.18164 1.12303 1.10412 1.78626 1.12724 1.16076 1.02036 1.78770 1.18779 0.92199 1.18467 1.48095 1.37258 1.09874 1.10687 1.23102 1.13536 0.73078 0.99460 1.23584 0.95428 1.04525 0.94710 1.23680 0.95723 1.03742 0.95097 0.89185 0.91057 0.91257 0.74966 0.74508 0.85316 0.86109 0.87735 0.90348 0.89029 0.80407 0.87673 0.83792 0.83416 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.47 71.98 0.68 -2.31 16 2 C 0.26 5.35 2.96 44.25 0.13 5.48 16 3 H 0.12 2.38 6.42 -2.39 -0.02 2.37 16 4 N -0.72 -17.37 5.07 -461.41 -2.34 -19.71 16 5 C 0.71 23.59 8.26 179.05 1.48 25.07 16 6 O -0.60 -25.68 13.72 -3.98 -0.05 -25.74 16 7 N -0.67 -22.18 5.35 -317.34 -1.70 -23.87 16 8 C 0.18 7.62 6.26 38.09 0.24 7.85 16 9 C -0.25 -10.22 9.97 22.58 0.23 -10.00 16 10 C -0.09 -4.21 10.02 22.20 0.22 -3.99 16 11 C -0.19 -10.33 8.66 22.75 0.20 -10.14 16 12 C 0.09 4.95 5.55 -21.31 -0.12 4.83 16 13 C -0.50 -28.18 9.06 23.46 0.21 -27.97 16 14 H 0.07 3.74 7.87 -2.91 -0.02 3.72 16 15 C 0.03 1.67 5.25 85.25 0.45 2.12 16 16 N -0.83 -44.75 10.81 21.82 0.24 -44.51 16 17 Si 0.98 39.60 29.57 68.60 2.03 41.63 16 18 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 19 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 20 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 21 C -0.23 -11.82 8.39 22.85 0.19 -11.63 16 22 C 0.18 3.89 6.91 138.14 0.95 4.84 16 23 N -0.31 -7.78 12.10 -50.45 -0.61 -8.39 16 24 N -0.10 -2.76 13.43 37.01 0.50 -2.26 16 25 N -0.10 -2.25 12.69 37.02 0.47 -1.78 16 26 N -0.26 -4.86 3.67 -317.81 -1.17 -6.03 16 27 C 0.01 0.11 6.59 44.99 0.30 0.40 16 28 C -0.14 -1.07 10.16 30.62 0.31 -0.76 16 29 C -0.14 -0.95 10.46 30.62 0.32 -0.63 16 30 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.41 8.42 8.40 -92.70 -0.78 7.64 16 34 H 0.42 10.20 8.83 -92.71 -0.82 9.38 16 35 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 36 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 37 H 0.10 5.81 6.18 -2.91 -0.02 5.79 16 38 H 0.29 13.82 8.30 -92.70 -0.77 13.05 16 39 H 0.09 4.97 6.44 -2.91 -0.02 4.95 16 40 H 0.18 1.46 7.23 -2.38 -0.02 1.44 16 41 H 0.10 1.07 7.85 -2.39 -0.02 1.06 16 42 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -74.54 378.18 2.63 -71.91 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: -0.52 Total: 35.57 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 5.79 Total: -16.81 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -4.61 Total: -106.56 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.05 Total: -25.74 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -74.54 2.63 -71.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836761959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.695 kcal (2) G-P(sol) polarization free energy of solvation -74.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds