Wall clock time and date at job start Wed Apr 1 2020 01:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34236 * 116.99577 * 2 1 4 4 O 1.20820 * 120.00466 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99456 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.53531 * 60.09802 * 5 3 2 7 7 C 1.53120 * 109.50267 * 299.99754 * 5 3 2 8 8 C 1.53123 * 109.15717 * 182.40556 * 7 5 3 9 9 C 1.53035 * 109.28012 * 57.65928 * 8 7 5 10 10 H 1.08997 * 109.46012 * 180.80563 * 9 8 7 11 11 C 1.50696 * 109.46231 * 60.83282 * 9 8 7 12 12 O 1.20831 * 119.99912 * 238.48178 * 11 9 8 13 13 O 1.34229 * 120.00022 * 58.48162 * 11 9 8 14 14 C 1.45202 * 116.99628 * 179.97438 * 13 11 9 15 15 N 1.46850 * 109.51842 * 300.81675 * 9 8 7 16 16 C 1.46903 * 110.99570 * 185.84077 * 15 9 8 17 17 C 1.50697 * 109.47152 * 66.41948 * 16 15 9 18 18 O 1.21281 * 119.99948 * 6.52485 * 17 16 15 19 19 N 1.34778 * 119.99704 * 186.52276 * 17 16 15 20 20 C 1.46502 * 119.99828 * 179.97438 * 19 17 16 21 21 C 1.50695 * 109.47101 * 180.02562 * 20 19 17 22 22 H 1.08002 * 120.00326 * 0.02562 * 21 20 19 23 23 C 1.37881 * 120.00359 * 180.02562 * 21 20 19 24 24 N 1.31512 * 119.99509 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00257 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47118 * 90.00049 * 25 23 21 27 27 H 1.48507 * 109.47019 * 210.00077 * 25 23 21 28 28 H 1.48494 * 109.47335 * 329.99952 * 25 23 21 29 29 C 1.46848 * 111.19773 * 61.74697 * 15 9 8 30 30 H 1.09000 * 109.47310 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47035 * 300.00295 * 1 2 3 32 32 H 1.09008 * 109.46909 * 59.99804 * 1 2 3 33 33 H 1.08993 * 109.52796 * 302.31249 * 7 5 3 34 34 H 1.09004 * 109.52067 * 62.44185 * 7 5 3 35 35 H 1.09005 * 109.50174 * 177.59928 * 8 7 5 36 36 H 1.09003 * 109.50273 * 297.67033 * 8 7 5 37 37 H 1.09002 * 109.46779 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.47551 * 300.00047 * 14 13 11 39 39 H 1.09003 * 109.47252 * 60.00630 * 14 13 11 40 40 H 1.08999 * 109.46807 * 186.42383 * 16 15 9 41 41 H 1.09000 * 109.47040 * 306.41442 * 16 15 9 42 42 H 0.97000 * 119.99830 * 0.02562 * 19 17 16 43 43 H 1.08999 * 109.47141 * 300.00067 * 20 19 17 44 44 H 1.09001 * 109.46858 * 60.00423 * 20 19 17 45 45 H 0.97001 * 120.00108 * 179.97438 * 24 23 21 46 46 H 1.09002 * 109.45973 * 178.24484 * 29 15 9 47 47 H 1.08994 * 109.46531 * 58.26699 * 29 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9575 0.7824 -0.8897 7 6 4.1141 0.5813 1.2510 8 6 5.6390 0.7182 1.2743 9 6 6.0136 2.2017 1.2422 10 1 7.0990 2.3022 1.2443 11 6 5.4434 2.8899 2.4555 12 8 4.6826 3.8189 2.3214 13 8 5.7808 2.4708 3.6853 14 6 5.1938 3.1809 4.8077 15 7 5.4673 2.8196 0.0272 16 6 5.9233 4.2096 -0.1071 17 6 7.4116 4.2295 -0.3424 18 8 8.0128 3.1898 -0.5113 19 7 8.0746 5.4028 -0.3652 20 6 9.5216 5.4221 -0.5933 21 6 10.0146 6.8460 -0.5709 22 1 9.3197 7.6555 -0.4031 23 6 11.3529 7.1153 -0.7647 24 7 12.1990 6.1296 -0.9697 25 14 11.9639 8.8803 -0.7377 26 1 12.3451 9.2510 0.6489 27 1 13.1461 9.0086 -1.6272 28 1 10.8863 9.7846 -1.2132 29 6 4.0010 2.7423 0.0054 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 3.6927 1.0486 2.1409 34 1 3.8425 -0.4742 1.2305 35 1 6.0313 0.2634 2.1838 36 1 6.0628 0.2163 0.4044 37 1 5.5481 2.7422 5.7405 38 1 5.4847 4.2306 4.7659 39 1 4.1077 3.1026 4.7593 40 1 5.4158 4.6786 -0.9500 41 1 5.6924 4.7576 0.8064 42 1 7.5937 6.2342 -0.2297 43 1 10.0207 4.8528 0.1908 44 1 9.7425 4.9760 -1.5630 45 1 13.1404 6.3191 -1.1064 46 1 3.6247 3.2355 -0.8908 47 1 3.5981 3.2375 0.8888 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859597028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:59 Heat of formation + Delta-G solvation = -194.418595 kcal Electronic energy + Delta-G solvation = -31363.675318 eV Core-core repulsion = 26933.304769 eV Total energy + Delta-G solvation = -4430.370549 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.172 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.60381 -40.62340 -39.08254 -38.00897 -36.75725 -36.35901 -34.26305 -33.69874 -32.33693 -31.94239 -28.61354 -28.32118 -27.76465 -26.50733 -25.01021 -23.54631 -22.55210 -22.26629 -21.02584 -19.90739 -19.66999 -17.89533 -17.56761 -17.42681 -16.90695 -16.76981 -16.68126 -16.20785 -15.77269 -15.37384 -15.26309 -15.02629 -14.45587 -14.24797 -14.16898 -13.95484 -13.75928 -13.54963 -13.42435 -12.99673 -12.87223 -12.61469 -12.42709 -12.33243 -12.13459 -11.93432 -11.71884 -11.63909 -11.32383 -11.15455 -11.09555 -10.97990 -10.87773 -10.84623 -10.81540 -10.61359 -10.45292 -10.31010 -9.39759 -9.07634 -8.73381 -8.34752 -7.87332 -6.16817 -4.23463 1.93167 2.03480 2.34443 2.61746 3.24253 3.30491 3.32910 3.35824 3.51407 4.16640 4.25181 4.37504 4.44940 4.54189 4.62067 4.77576 4.78378 4.85179 4.92218 4.94892 5.03076 5.15026 5.19359 5.20357 5.31419 5.34549 5.36566 5.40470 5.56274 5.60812 5.67373 5.69389 5.79134 5.85474 5.99289 6.08189 6.33822 6.67008 6.79122 7.30607 7.43447 7.46770 7.51647 7.60420 7.67119 7.96924 8.62353 8.78132 9.09373 9.43107 10.93324 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.017062 B = 0.002560 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.720581 B =10935.280415 C =11562.229578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.468 3.532 4 O -0.503 6.503 5 C -0.078 4.078 6 H 0.123 0.877 7 C -0.116 4.116 8 C -0.102 4.102 9 C 0.086 3.914 10 H 0.144 0.856 11 C 0.435 3.565 12 O -0.507 6.507 13 O -0.357 6.357 14 C 0.033 3.967 15 N -0.481 5.481 16 C 0.021 3.979 17 C 0.497 3.503 18 O -0.540 6.540 19 N -0.713 5.713 20 C 0.252 3.748 21 C -0.543 4.543 22 H 0.063 0.937 23 C 0.064 3.936 24 N -0.885 5.885 25 Si 0.903 3.097 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.273 1.273 29 C 0.046 3.954 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.390 0.610 43 H 0.026 0.974 44 H 0.028 0.972 45 H 0.266 0.734 46 H 0.088 0.912 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.074 -13.012 7.374 25.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.310 3.690 4 O -0.390 6.390 5 C -0.097 4.097 6 H 0.141 0.859 7 C -0.154 4.154 8 C -0.139 4.139 9 C -0.025 4.025 10 H 0.161 0.839 11 C 0.277 3.723 12 O -0.396 6.396 13 O -0.272 6.272 14 C -0.061 4.061 15 N -0.204 5.204 16 C -0.110 4.110 17 C 0.281 3.719 18 O -0.419 6.419 19 N -0.362 5.362 20 C 0.131 3.869 21 C -0.582 4.582 22 H 0.081 0.919 23 C -0.140 4.140 24 N -0.522 5.522 25 Si 0.731 3.269 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.198 1.198 29 C -0.082 4.082 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.223 0.777 43 H 0.044 0.956 44 H 0.046 0.954 45 H 0.075 0.925 46 H 0.107 0.893 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.700 -13.465 6.792 25.611 hybrid contribution -0.516 2.175 0.819 2.380 sum -21.216 -11.291 7.610 25.209 Atomic orbital electron populations 1.23273 0.76393 1.03683 1.02579 1.86512 1.23353 1.33427 1.84119 1.23726 0.91867 0.81315 0.72062 1.90683 1.67169 1.36323 1.44848 1.21096 0.86493 0.99370 1.02751 0.85886 1.21661 0.96378 1.01694 0.95624 1.21580 0.94671 0.92671 1.05001 1.22036 1.03353 0.95153 0.81978 0.83873 1.25744 0.78597 0.82244 0.85684 1.90568 1.34106 1.28549 1.86412 1.86572 1.66705 1.58344 1.15533 1.23255 0.98574 0.97567 0.86729 1.61981 1.08511 1.17472 1.32411 1.22273 0.95055 0.89513 1.04156 1.20303 0.88495 0.84801 0.78319 1.90634 1.69318 1.32092 1.49842 1.46471 1.11908 1.07139 1.70662 1.19096 0.73313 0.97316 0.97185 1.21231 0.93679 0.91846 1.51411 0.91932 1.24947 0.96546 0.97805 0.94716 1.69971 1.03563 1.31323 1.47392 0.86420 0.78475 0.84018 0.78030 1.20493 1.20988 1.19756 1.22315 0.87195 0.93703 1.04968 0.88039 0.91971 0.91844 0.92127 0.89371 0.89233 0.88312 0.88159 0.91814 0.92195 0.87556 0.90113 0.77721 0.95579 0.95408 0.92453 0.89323 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.41 10.49 -39.27 -0.41 -3.82 16 3 C 0.47 5.28 7.26 36.01 0.26 5.54 16 4 O -0.50 -7.06 15.73 -18.74 -0.29 -7.36 16 5 C -0.08 -0.81 2.79 -91.69 -0.26 -1.06 16 6 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 7 C -0.12 -1.06 4.97 -26.61 -0.13 -1.20 16 8 C -0.10 -1.01 5.54 -26.65 -0.15 -1.16 16 9 C 0.09 1.15 2.52 -68.88 -0.17 0.98 16 10 H 0.14 2.26 6.07 -51.93 -0.32 1.95 16 11 C 0.44 5.96 5.45 36.00 0.20 6.16 16 12 O -0.51 -7.74 11.40 -18.75 -0.21 -7.95 16 13 O -0.36 -4.40 10.40 -39.25 -0.41 -4.80 16 14 C 0.03 0.31 10.56 101.05 1.07 1.38 16 15 N -0.48 -6.76 4.29 -229.51 -0.99 -7.75 16 16 C 0.02 0.31 5.18 -4.98 -0.03 0.29 16 17 C 0.50 9.72 7.35 -10.99 -0.08 9.64 16 18 O -0.54 -12.22 14.73 5.56 0.08 -12.14 16 19 N -0.71 -14.94 5.55 -61.47 -0.34 -15.28 16 20 C 0.25 6.60 5.43 -5.20 -0.03 6.57 16 21 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16 22 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 23 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 24 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 25 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 29 C 0.05 0.57 3.70 -3.83 -0.01 0.56 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 32 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.06 0.61 7.31 -51.93 -0.38 0.23 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.77 8.07 -51.93 -0.42 0.35 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 39 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 40 H 0.11 1.43 7.97 -51.93 -0.41 1.02 16 41 H 0.08 1.24 5.73 -51.93 -0.30 0.94 16 42 H 0.39 7.16 8.32 -40.82 -0.34 6.82 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.09 1.11 7.98 -51.93 -0.41 0.69 16 47 H 0.08 1.18 5.18 -51.93 -0.27 0.91 16 LS Contribution 384.85 15.07 5.80 5.80 Total: -1.00 -34.25 384.85 -6.77 -41.03 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.03 Total: 5.98 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: 1.32 Total: 15.62 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.59 Total: -48.21 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -1.25 Total: -36.07 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.25 -6.77 -41.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859597028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.392 kcal (2) G-P(sol) polarization free energy of solvation -34.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds