Wall clock time and date at job start Wed Apr 1 2020 01:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34236 * 116.99577 * 2 1 4 4 O 1.20820 * 120.00466 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99456 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.53531 * 60.09802 * 5 3 2 7 7 C 1.53120 * 109.50267 * 299.99754 * 5 3 2 8 8 C 1.53123 * 109.15717 * 182.40556 * 7 5 3 9 9 C 1.53035 * 109.28012 * 57.65928 * 8 7 5 10 10 H 1.08997 * 109.46012 * 180.80563 * 9 8 7 11 11 C 1.50696 * 109.46231 * 60.83282 * 9 8 7 12 12 O 1.20831 * 119.99912 * 238.48178 * 11 9 8 13 13 O 1.34229 * 120.00022 * 58.48162 * 11 9 8 14 14 C 1.45202 * 116.99628 * 179.97438 * 13 11 9 15 15 N 1.46850 * 109.51842 * 300.81675 * 9 8 7 16 16 C 1.46903 * 110.99570 * 185.84077 * 15 9 8 17 17 C 1.50697 * 109.47152 * 66.41948 * 16 15 9 18 18 O 1.21281 * 119.99948 * 6.52485 * 17 16 15 19 19 N 1.34778 * 119.99704 * 186.52276 * 17 16 15 20 20 C 1.46502 * 119.99828 * 179.97438 * 19 17 16 21 21 C 1.50695 * 109.47101 * 180.02562 * 20 19 17 22 22 H 1.08002 * 120.00326 * 0.02562 * 21 20 19 23 23 C 1.37881 * 120.00359 * 180.02562 * 21 20 19 24 24 N 1.31512 * 119.99509 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00257 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47118 * 90.00049 * 25 23 21 27 27 H 1.48507 * 109.47019 * 210.00077 * 25 23 21 28 28 H 1.48494 * 109.47335 * 329.99952 * 25 23 21 29 29 C 1.46848 * 111.19773 * 61.74697 * 15 9 8 30 30 H 1.09000 * 109.47310 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47035 * 300.00295 * 1 2 3 32 32 H 1.09008 * 109.46909 * 59.99804 * 1 2 3 33 33 H 1.08993 * 109.52796 * 302.31249 * 7 5 3 34 34 H 1.09004 * 109.52067 * 62.44185 * 7 5 3 35 35 H 1.09005 * 109.50174 * 177.59928 * 8 7 5 36 36 H 1.09003 * 109.50273 * 297.67033 * 8 7 5 37 37 H 1.09002 * 109.46779 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.47551 * 300.00047 * 14 13 11 39 39 H 1.09003 * 109.47252 * 60.00630 * 14 13 11 40 40 H 1.08999 * 109.46807 * 186.42383 * 16 15 9 41 41 H 1.09000 * 109.47040 * 306.41442 * 16 15 9 42 42 H 0.97000 * 119.99830 * 0.02562 * 19 17 16 43 43 H 1.08999 * 109.47141 * 300.00067 * 20 19 17 44 44 H 1.09001 * 109.46858 * 60.00423 * 20 19 17 45 45 H 0.97001 * 120.00108 * 179.97438 * 24 23 21 46 46 H 1.09002 * 109.45973 * 178.24484 * 29 15 9 47 47 H 1.08994 * 109.46531 * 58.26699 * 29 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9575 0.7824 -0.8897 7 6 4.1141 0.5813 1.2510 8 6 5.6390 0.7182 1.2743 9 6 6.0136 2.2017 1.2422 10 1 7.0990 2.3022 1.2443 11 6 5.4434 2.8899 2.4555 12 8 4.6826 3.8189 2.3214 13 8 5.7808 2.4708 3.6853 14 6 5.1938 3.1809 4.8077 15 7 5.4673 2.8196 0.0272 16 6 5.9233 4.2096 -0.1071 17 6 7.4116 4.2295 -0.3424 18 8 8.0128 3.1898 -0.5113 19 7 8.0746 5.4028 -0.3652 20 6 9.5216 5.4221 -0.5933 21 6 10.0146 6.8460 -0.5709 22 1 9.3197 7.6555 -0.4031 23 6 11.3529 7.1153 -0.7647 24 7 12.1990 6.1296 -0.9697 25 14 11.9639 8.8803 -0.7377 26 1 12.3451 9.2510 0.6489 27 1 13.1461 9.0086 -1.6272 28 1 10.8863 9.7846 -1.2132 29 6 4.0010 2.7423 0.0054 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 3.6927 1.0486 2.1409 34 1 3.8425 -0.4742 1.2305 35 1 6.0313 0.2634 2.1838 36 1 6.0628 0.2163 0.4044 37 1 5.5481 2.7422 5.7405 38 1 5.4847 4.2306 4.7659 39 1 4.1077 3.1026 4.7593 40 1 5.4158 4.6786 -0.9500 41 1 5.6924 4.7576 0.8064 42 1 7.5937 6.2342 -0.2297 43 1 10.0207 4.8528 0.1908 44 1 9.7425 4.9760 -1.5630 45 1 13.1404 6.3191 -1.1064 46 1 3.6247 3.2355 -0.8908 47 1 3.5981 3.2375 0.8888 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859597028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:58 Heat of formation + Delta-G solvation = -219.436167 kcal Electronic energy + Delta-G solvation = -31364.760162 eV Core-core repulsion = 26933.304769 eV Total energy + Delta-G solvation = -4431.455392 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.62833 -41.51239 -40.52057 -39.18693 -37.62952 -37.36217 -36.13023 -34.82087 -34.32400 -32.89877 -30.18315 -29.05528 -28.68942 -28.01308 -25.96597 -24.91024 -23.90974 -23.44712 -22.01043 -21.31560 -20.86427 -19.05609 -18.76299 -18.54170 -17.97203 -17.80295 -17.70732 -17.45455 -17.09543 -16.89006 -16.59691 -16.35948 -15.87394 -15.53503 -15.18249 -14.97828 -14.81352 -14.60650 -14.40399 -14.24030 -14.05300 -13.95322 -13.80216 -13.58141 -13.18456 -13.09739 -12.92091 -12.87310 -12.70872 -12.59014 -12.33703 -12.23801 -12.10184 -11.83437 -11.81125 -11.74906 -11.54330 -11.48111 -11.37435 -10.79610 -10.70010 -9.81711 -9.49265 -8.28831 -6.44739 0.96557 1.07894 1.42735 1.44676 1.54855 1.56588 1.66671 1.74793 2.23329 2.41809 2.84866 3.05898 3.37408 3.59608 3.67824 3.73806 3.79747 3.99686 4.06094 4.19693 4.25617 4.27156 4.30081 4.32170 4.32937 4.36224 4.48619 4.51736 4.63776 4.68272 4.71554 4.84622 4.94577 5.00928 5.11463 5.18601 5.26871 5.29386 5.35571 5.48558 5.54975 5.70061 5.74671 5.85922 6.56567 6.64617 6.65474 6.90509 7.23711 7.46885 8.83073 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.017062 B = 0.002560 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.720581 B =10935.280415 C =11562.229578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.474 3.526 4 O -0.537 6.537 5 C -0.075 4.075 6 H 0.139 0.861 7 C -0.107 4.107 8 C -0.096 4.096 9 C 0.081 3.919 10 H 0.116 0.884 11 C 0.436 3.564 12 O -0.526 6.526 13 O -0.360 6.360 14 C 0.027 3.973 15 N -0.487 5.487 16 C 0.035 3.965 17 C 0.498 3.502 18 O -0.572 6.572 19 N -0.711 5.711 20 C 0.270 3.730 21 C -0.557 4.557 22 H 0.080 0.920 23 C 0.006 3.994 24 N -0.928 5.928 25 Si 0.982 3.018 26 H -0.271 1.271 27 H -0.283 1.283 28 H -0.258 1.258 29 C 0.051 3.949 30 H 0.134 0.866 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.132 0.868 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.129 0.871 41 H 0.084 0.916 42 H 0.405 0.595 43 H -0.010 1.010 44 H -0.009 1.009 45 H 0.269 0.731 46 H 0.088 0.912 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.580 -13.088 7.975 27.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.317 3.683 4 O -0.426 6.426 5 C -0.095 4.095 6 H 0.157 0.843 7 C -0.145 4.145 8 C -0.133 4.133 9 C -0.030 4.030 10 H 0.134 0.866 11 C 0.280 3.720 12 O -0.416 6.416 13 O -0.275 6.275 14 C -0.067 4.067 15 N -0.209 5.209 16 C -0.096 4.096 17 C 0.284 3.716 18 O -0.452 6.452 19 N -0.361 5.361 20 C 0.147 3.853 21 C -0.595 4.595 22 H 0.098 0.902 23 C -0.194 4.194 24 N -0.566 5.566 25 Si 0.805 3.195 26 H -0.197 1.197 27 H -0.208 1.208 28 H -0.182 1.182 29 C -0.076 4.076 30 H 0.153 0.847 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.133 0.867 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.150 0.850 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.147 0.853 41 H 0.101 0.899 42 H 0.240 0.760 43 H 0.008 0.992 44 H 0.009 0.991 45 H 0.078 0.922 46 H 0.107 0.893 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.253 -13.562 7.413 27.094 hybrid contribution -0.100 2.098 0.683 2.208 sum -22.354 -11.464 8.096 26.394 Atomic orbital electron populations 1.23572 0.74788 1.05840 1.02417 1.86499 1.24897 1.32231 1.83523 1.23791 0.92023 0.81330 0.71127 1.90674 1.67891 1.37471 1.46592 1.21086 0.86278 0.97969 1.04128 0.84335 1.21634 0.95325 1.03030 0.94494 1.21619 0.95458 0.90149 1.06110 1.22045 1.01685 0.97371 0.81862 0.86619 1.25721 0.78213 0.81851 0.86261 1.90559 1.35047 1.29279 1.86760 1.86552 1.66727 1.58575 1.15656 1.23535 0.99013 0.97289 0.86837 1.61984 1.09478 1.16386 1.33100 1.22132 0.91394 0.90967 1.05104 1.21039 0.90233 0.83623 0.76701 1.90616 1.70530 1.33167 1.50885 1.46227 1.10025 1.08634 1.71236 1.18527 0.76154 0.96676 0.93907 1.21609 0.94399 0.92300 1.51209 0.90211 1.26012 0.96754 1.02728 0.93931 1.70121 1.04056 1.34078 1.48359 0.85201 0.77999 0.78017 0.78277 1.19656 1.20804 1.18214 1.22240 0.85816 0.95432 1.04136 0.84744 0.92209 0.92020 0.92996 0.86673 0.87628 0.87764 0.84999 0.92629 0.91694 0.85316 0.89860 0.75970 0.99173 0.99083 0.92219 0.89330 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.36 -6.01 10.49 -51.47 -0.54 -6.55 16 3 C 0.47 10.01 7.26 71.24 0.52 10.52 16 4 O -0.54 -14.73 15.73 21.98 0.35 -14.39 16 5 C -0.08 -1.45 2.79 -11.49 -0.03 -1.48 16 6 H 0.14 2.26 8.14 -2.38 -0.02 2.24 16 7 C -0.11 -1.75 4.97 30.68 0.15 -1.59 16 8 C -0.10 -1.78 5.54 30.65 0.17 -1.61 16 9 C 0.08 2.17 2.52 44.19 0.11 2.28 16 10 H 0.12 3.79 6.07 -2.39 -0.01 3.77 16 11 C 0.44 11.85 5.45 71.23 0.39 12.24 16 12 O -0.53 -15.96 11.40 21.95 0.25 -15.71 16 13 O -0.36 -8.61 10.40 -51.41 -0.53 -9.15 16 14 C 0.03 0.47 10.56 113.37 1.20 1.67 16 15 N -0.49 -13.51 4.29 -880.05 -3.78 -17.29 16 16 C 0.03 1.05 5.18 85.56 0.44 1.49 16 17 C 0.50 19.91 7.35 87.66 0.64 20.56 16 18 O -0.57 -26.83 14.73 -3.03 -0.04 -26.87 16 19 N -0.71 -30.45 5.55 -466.79 -2.59 -33.04 16 20 C 0.27 14.76 5.43 85.63 0.46 15.22 16 21 C -0.56 -30.47 9.28 25.60 0.24 -30.23 16 22 H 0.08 3.99 7.60 -2.91 -0.02 3.97 16 23 C 0.01 0.31 5.46 84.66 0.46 0.77 16 24 N -0.93 -55.64 13.29 21.45 0.28 -55.35 16 25 Si 0.98 42.55 29.54 68.60 2.03 44.58 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 28 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 29 C 0.05 1.25 3.70 86.33 0.32 1.57 16 30 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 32 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.05 0.96 7.31 -2.39 -0.02 0.94 16 34 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.11 1.63 8.07 -2.38 -0.02 1.61 16 36 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.05 1.08 8.13 -2.39 -0.02 1.06 16 39 H 0.06 1.09 8.13 -2.39 -0.02 1.08 16 40 H 0.13 3.33 7.97 -2.39 -0.02 3.31 16 41 H 0.08 2.55 5.73 -2.39 -0.01 2.53 16 42 H 0.41 14.81 8.32 -92.71 -0.77 14.04 16 43 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 44 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 45 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 46 H 0.09 2.15 7.98 -2.39 -0.02 2.13 16 47 H 0.07 1.87 5.18 -2.39 -0.01 1.85 16 Total: -1.00 -76.34 384.85 1.92 -74.42 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.23 Total: 26.43 kcal Atomic # 6 Polarization: 26.65 SS G_CDS: 6.27 Total: 32.93 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -6.08 Total: -105.69 kcal Atomic # 8 Polarization: -72.14 SS G_CDS: -0.52 Total: -72.66 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -76.34 1.92 -74.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859597028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.019 kcal (2) G-P(sol) polarization free energy of solvation -76.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds