Wall clock time and date at job start Wed Apr 1 2020 01:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35500 * 126.97693 * 2 1 4 4 N 1.30526 * 107.30137 * 180.22698 * 3 2 1 5 5 N 1.28596 * 109.67138 * 359.77402 * 4 3 2 6 6 C 1.30514 * 109.67794 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.34754 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.99409 * 196.12203 * 7 6 5 9 9 C 1.54317 * 109.88380 * 75.02533 * 7 6 5 10 10 C 1.55154 * 102.94373 * 218.38812 * 9 7 6 11 11 C 1.54917 * 101.61458 * 35.48651 * 10 9 7 12 12 N 1.47020 * 109.88064 * 317.21742 * 7 6 5 13 13 C 1.34783 * 125.65064 * 298.32158 * 12 7 6 14 14 O 1.21583 * 119.99828 * 0.02562 * 13 12 7 15 15 N 1.34774 * 120.00333 * 179.97438 * 13 12 7 16 16 C 1.39456 * 120.00310 * 174.96774 * 15 13 12 17 17 C 1.38636 * 119.65184 * 185.36701 * 16 15 13 18 18 C 1.40815 * 118.67663 * 179.97438 * 17 16 15 19 19 C 1.41548 * 120.99668 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99751 * 151.73312 * 19 18 17 21 21 C 1.40030 * 120.00287 * 331.73008 * 19 18 17 22 22 N 1.30740 * 119.99621 * 350.17516 * 21 19 18 23 23 Si 1.86793 * 120.00056 * 170.17601 * 21 19 18 24 24 H 1.48498 * 109.47554 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47213 * 119.99951 * 23 21 19 26 26 H 1.48506 * 109.47049 * 239.99880 * 23 21 19 27 27 C 1.41161 * 118.00625 * 0.02562 * 18 17 16 28 28 C 1.36592 * 119.12767 * 359.97438 * 27 18 17 29 29 N 1.32068 * 121.25454 * 359.72485 * 28 27 18 30 30 H 1.09002 * 109.46652 * 270.15802 * 1 2 3 31 31 H 1.08997 * 109.47101 * 30.15229 * 1 2 3 32 32 H 1.08995 * 109.46968 * 150.15454 * 1 2 3 33 33 H 1.07993 * 126.34951 * 359.97438 * 3 2 1 34 34 H 1.09000 * 110.72151 * 100.02702 * 9 7 6 35 35 H 1.08999 * 110.86994 * 336.82380 * 9 7 6 36 36 H 1.09002 * 111.00520 * 153.57285 * 10 9 7 37 37 H 1.08994 * 111.00708 * 277.39393 * 10 9 7 38 38 H 1.08993 * 110.36886 * 81.84577 * 11 10 9 39 39 H 1.08996 * 110.36360 * 204.17219 * 11 10 9 40 40 H 0.97002 * 119.99741 * 354.96954 * 15 13 12 41 41 H 1.08007 * 120.66027 * 359.97438 * 17 16 15 42 42 H 0.97005 * 119.99733 * 180.02562 * 22 21 19 43 43 H 1.07998 * 120.43767 * 180.02562 * 27 18 17 44 44 H 1.07998 * 119.37237 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0825 0.0000 4 7 3.5091 0.6430 -0.0049 5 7 3.5090 -0.6429 -0.0032 6 6 2.2801 -1.0823 0.0034 7 6 1.8477 -2.5260 0.0069 8 1 0.7967 -2.6009 -0.2721 9 6 2.0635 -3.1351 1.4083 10 6 2.5582 -4.5709 1.0908 11 6 3.4036 -4.3343 -0.1857 12 7 2.6715 -3.2969 -0.9356 13 6 2.7446 -3.0908 -2.2656 14 8 2.0928 -2.2026 -2.7799 15 7 3.5410 -3.8686 -3.0254 16 6 3.5377 -3.7254 -4.4125 17 6 4.2740 -4.6021 -5.1943 18 6 4.2556 -4.4390 -6.5929 19 6 4.9896 -5.3056 -7.4376 20 1 4.6504 -5.4921 -8.4459 21 6 6.1556 -5.9213 -6.9661 22 7 6.6727 -5.5532 -5.8231 23 14 6.9721 -7.2683 -7.9701 24 1 6.1954 -7.4979 -9.2148 25 1 8.3557 -6.8565 -8.3184 26 1 7.0140 -8.5219 -7.1751 27 6 3.4840 -3.3845 -7.1271 28 6 2.7910 -2.5707 -6.2767 29 7 2.8263 -2.7564 -4.9696 30 1 -0.3633 0.0028 1.0277 31 1 -0.3633 0.8886 -0.5162 32 1 -0.3633 -0.8913 -0.5114 33 1 1.9702 2.1170 -0.0004 34 1 1.1265 -3.1643 1.9646 35 1 2.8212 -2.5794 1.9608 36 1 3.1748 -4.9599 1.9011 37 1 1.7199 -5.2368 0.8863 38 1 4.3993 -3.9789 0.0792 39 1 3.4705 -5.2510 -0.7716 40 1 4.1165 -4.5281 -2.6072 41 1 4.8502 -5.3945 -4.7398 42 1 7.4806 -5.9795 -5.4966 43 1 3.4415 -3.2238 -8.1942 44 1 2.1997 -1.7625 -6.6811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871728500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:03 Heat of formation + Delta-G solvation = 109.168911 kcal Electronic energy + Delta-G solvation = -29803.349781 eV Core-core repulsion = 25758.038196 eV Total energy + Delta-G solvation = -4045.311585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.03598 -40.11726 -38.52818 -37.07330 -35.04431 -34.27658 -33.73290 -31.60319 -31.42655 -30.43944 -28.55857 -28.19483 -27.63881 -25.95390 -24.08423 -22.41706 -21.99291 -21.84039 -21.72186 -20.43683 -19.22001 -18.01318 -17.56960 -17.26731 -16.41797 -16.22082 -15.70944 -15.34197 -15.00003 -14.71276 -14.53524 -14.21211 -14.16198 -13.78182 -13.63213 -13.39266 -13.11560 -12.94266 -12.78300 -12.62233 -12.49061 -12.14431 -11.93440 -11.49034 -11.41148 -11.38293 -11.17673 -11.07941 -10.88554 -10.26172 -10.23635 -10.15470 -10.08705 -9.74829 -9.58027 -9.35893 -9.13886 -8.54774 -7.90810 -7.69577 -6.99320 -6.71504 -4.58738 1.80473 2.42781 2.72292 2.81173 2.82594 3.04537 3.09031 3.09948 3.26510 3.79728 3.89138 4.10069 4.25072 4.39256 4.46404 4.51107 4.57765 4.74133 4.75842 4.81418 4.90315 5.14297 5.20050 5.39503 5.44724 5.53313 5.62753 5.69973 5.73221 5.86092 5.88672 5.99587 6.20459 6.28099 6.61754 6.65902 6.83303 6.85723 6.99313 7.15700 7.29943 7.45527 7.51883 7.89424 8.11176 8.37091 8.49447 8.75792 8.79875 8.85876 9.16873 9.75111 10.15075 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.016292 B = 0.002957 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.273944 B = 9465.948272 C =10300.078165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.470 5.470 3 C 0.144 3.856 4 N -0.298 5.298 5 N -0.278 5.278 6 C 0.178 3.822 7 C 0.249 3.751 8 H 0.088 0.912 9 C -0.120 4.120 10 C -0.127 4.127 11 C 0.096 3.904 12 N -0.627 5.627 13 C 0.716 3.284 14 O -0.528 6.528 15 N -0.662 5.662 16 C 0.355 3.645 17 C -0.239 4.239 18 C 0.146 3.854 19 C -0.457 4.457 20 H 0.081 0.919 21 C 0.075 3.925 22 N -0.795 5.795 23 Si 0.914 3.086 24 H -0.260 1.260 25 H -0.274 1.274 26 H -0.272 1.272 27 C -0.281 4.281 28 C 0.118 3.882 29 N -0.551 5.551 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.215 0.785 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.405 0.595 41 H 0.129 0.871 42 H 0.280 0.720 43 H 0.102 0.898 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.626 1.957 16.986 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.161 5.161 3 C -0.143 4.143 4 N -0.137 5.137 5 N -0.118 5.118 6 C -0.091 4.091 7 C 0.141 3.859 8 H 0.105 0.895 9 C -0.159 4.159 10 C -0.165 4.165 11 C -0.027 4.027 12 N -0.368 5.368 13 C 0.418 3.582 14 O -0.398 6.398 15 N -0.309 5.309 16 C 0.129 3.871 17 C -0.265 4.265 18 C 0.137 3.863 19 C -0.489 4.489 20 H 0.100 0.900 21 C -0.143 4.143 22 N -0.421 5.421 23 Si 0.738 3.262 24 H -0.184 1.184 25 H -0.199 1.199 26 H -0.197 1.197 27 C -0.305 4.305 28 C -0.036 4.036 29 N -0.270 5.270 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.232 0.768 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.240 0.760 41 H 0.147 0.853 42 H 0.091 0.909 43 H 0.120 0.880 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.931 3.185 17.203 20.118 hybrid contribution -0.109 -1.175 -0.887 1.476 sum -10.040 2.010 16.316 19.263 Atomic orbital electron populations 1.22095 0.75625 1.05690 1.03566 1.46075 1.09056 1.06655 1.54346 1.26348 0.87402 0.94746 1.05817 1.74241 1.18070 1.03484 1.17902 1.74193 1.16962 1.02836 1.17825 1.25090 0.87622 0.92224 1.04184 1.19444 0.94838 0.81501 0.90129 0.89462 1.22688 1.02944 0.96509 0.93790 1.22749 1.00244 0.96066 0.97428 1.22346 0.96214 0.91296 0.92831 1.47608 1.49044 1.35493 1.04703 1.15528 0.81248 0.82407 0.79030 1.90996 1.46591 1.32050 1.70178 1.42516 1.43545 1.39855 1.05017 1.17964 0.94670 0.93107 0.81372 1.21541 1.07269 1.03363 0.94309 1.17567 0.88108 0.89249 0.91364 1.19586 1.06484 1.23005 0.99779 0.90047 1.25935 0.96903 0.96362 0.95052 1.69766 1.18045 1.35724 1.18565 0.86173 0.79167 0.80300 0.80552 1.18409 1.19909 1.19732 1.21696 1.08877 1.00778 0.99147 1.21460 0.96609 0.97176 0.88317 1.67194 1.24940 1.22098 1.12779 0.90090 0.88966 0.88981 0.76821 0.89531 0.89650 0.89339 0.90196 0.90854 0.90367 0.76030 0.85332 0.90874 0.88015 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 11.01 59.85 0.66 1.18 16 2 N -0.47 -5.80 3.15 -122.69 -0.39 -6.18 16 3 C 0.14 1.89 12.74 -89.94 -1.15 0.74 16 4 N -0.30 -5.29 12.21 29.69 0.36 -4.93 16 5 N -0.28 -5.16 12.20 32.79 0.40 -4.76 16 6 C 0.18 2.69 5.98 -154.99 -0.93 1.76 16 7 C 0.25 3.14 3.23 -68.11 -0.22 2.92 16 8 H 0.09 1.01 6.95 -51.93 -0.36 0.65 16 9 C -0.12 -1.01 6.46 -24.90 -0.16 -1.17 16 10 C -0.13 -0.95 7.08 -24.58 -0.17 -1.13 16 11 C 0.10 1.07 6.54 -2.50 -0.02 1.06 16 12 N -0.63 -9.65 3.05 -169.98 -0.52 -10.17 16 13 C 0.72 14.90 8.24 -86.91 -0.72 14.19 16 14 O -0.53 -13.00 14.44 5.29 0.08 -12.93 16 15 N -0.66 -14.10 5.34 -15.86 -0.08 -14.19 16 16 C 0.35 9.03 7.42 -154.68 -1.15 7.88 16 17 C -0.24 -6.24 8.60 -38.46 -0.33 -6.57 16 18 C 0.15 3.91 5.58 -106.55 -0.59 3.32 16 19 C -0.46 -11.95 9.13 -37.65 -0.34 -12.29 16 20 H 0.08 2.04 7.87 -52.49 -0.41 1.63 16 21 C 0.08 1.85 5.30 -17.34 -0.09 1.76 16 22 N -0.79 -20.05 10.83 55.55 0.60 -19.45 16 23 Si 0.91 18.26 29.57 -169.99 -5.03 13.24 16 24 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 27 C -0.28 -7.10 9.85 -39.07 -0.38 -7.48 16 28 C 0.12 2.95 11.10 -18.04 -0.20 2.75 16 29 N -0.55 -14.73 7.86 -12.76 -0.10 -14.83 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.69 7.08 -51.93 -0.37 0.32 16 33 H 0.22 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.80 7.85 -51.93 -0.41 0.39 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.80 7.38 -51.93 -0.38 0.42 16 40 H 0.40 7.31 7.24 -40.82 -0.30 7.02 16 41 H 0.13 3.32 6.27 -52.48 -0.33 2.99 16 42 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 43 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 44 H 0.12 2.65 8.06 -52.49 -0.42 2.22 16 LS Contribution 370.18 15.07 5.58 5.58 Total: -1.00 -38.42 370.18 -10.39 -48.80 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -5.50 Total: 10.90 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: -5.79 Total: 8.93 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: 0.28 Total: -74.52 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.93 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.42 -10.39 -48.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871728500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.972 kcal (2) G-P(sol) polarization free energy of solvation -38.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds