Wall clock time and date at job start Wed Apr 1 2020 01:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35500 * 126.97693 * 2 1 4 4 N 1.30526 * 107.30137 * 180.22698 * 3 2 1 5 5 N 1.28596 * 109.67138 * 359.77402 * 4 3 2 6 6 C 1.30514 * 109.67794 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.34754 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.99409 * 196.12203 * 7 6 5 9 9 C 1.54317 * 109.88380 * 75.02533 * 7 6 5 10 10 C 1.55154 * 102.94373 * 218.38812 * 9 7 6 11 11 C 1.54917 * 101.61458 * 35.48651 * 10 9 7 12 12 N 1.47020 * 109.88064 * 317.21742 * 7 6 5 13 13 C 1.34783 * 125.65064 * 298.32158 * 12 7 6 14 14 O 1.21583 * 119.99828 * 0.02562 * 13 12 7 15 15 N 1.34774 * 120.00333 * 179.97438 * 13 12 7 16 16 C 1.39456 * 120.00310 * 174.96774 * 15 13 12 17 17 C 1.38636 * 119.65184 * 185.36701 * 16 15 13 18 18 C 1.40815 * 118.67663 * 179.97438 * 17 16 15 19 19 C 1.41548 * 120.99668 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99751 * 151.73312 * 19 18 17 21 21 C 1.40030 * 120.00287 * 331.73008 * 19 18 17 22 22 N 1.30740 * 119.99621 * 350.17516 * 21 19 18 23 23 Si 1.86793 * 120.00056 * 170.17601 * 21 19 18 24 24 H 1.48498 * 109.47554 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47213 * 119.99951 * 23 21 19 26 26 H 1.48506 * 109.47049 * 239.99880 * 23 21 19 27 27 C 1.41161 * 118.00625 * 0.02562 * 18 17 16 28 28 C 1.36592 * 119.12767 * 359.97438 * 27 18 17 29 29 N 1.32068 * 121.25454 * 359.72485 * 28 27 18 30 30 H 1.09002 * 109.46652 * 270.15802 * 1 2 3 31 31 H 1.08997 * 109.47101 * 30.15229 * 1 2 3 32 32 H 1.08995 * 109.46968 * 150.15454 * 1 2 3 33 33 H 1.07993 * 126.34951 * 359.97438 * 3 2 1 34 34 H 1.09000 * 110.72151 * 100.02702 * 9 7 6 35 35 H 1.08999 * 110.86994 * 336.82380 * 9 7 6 36 36 H 1.09002 * 111.00520 * 153.57285 * 10 9 7 37 37 H 1.08994 * 111.00708 * 277.39393 * 10 9 7 38 38 H 1.08993 * 110.36886 * 81.84577 * 11 10 9 39 39 H 1.08996 * 110.36360 * 204.17219 * 11 10 9 40 40 H 0.97002 * 119.99741 * 354.96954 * 15 13 12 41 41 H 1.08007 * 120.66027 * 359.97438 * 17 16 15 42 42 H 0.97005 * 119.99733 * 180.02562 * 22 21 19 43 43 H 1.07998 * 120.43767 * 180.02562 * 27 18 17 44 44 H 1.07998 * 119.37237 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0825 0.0000 4 7 3.5091 0.6430 -0.0049 5 7 3.5090 -0.6429 -0.0032 6 6 2.2801 -1.0823 0.0034 7 6 1.8477 -2.5260 0.0069 8 1 0.7967 -2.6009 -0.2721 9 6 2.0635 -3.1351 1.4083 10 6 2.5582 -4.5709 1.0908 11 6 3.4036 -4.3343 -0.1857 12 7 2.6715 -3.2969 -0.9356 13 6 2.7446 -3.0908 -2.2656 14 8 2.0928 -2.2026 -2.7799 15 7 3.5410 -3.8686 -3.0254 16 6 3.5377 -3.7254 -4.4125 17 6 4.2740 -4.6021 -5.1943 18 6 4.2556 -4.4390 -6.5929 19 6 4.9896 -5.3056 -7.4376 20 1 4.6504 -5.4921 -8.4459 21 6 6.1556 -5.9213 -6.9661 22 7 6.6727 -5.5532 -5.8231 23 14 6.9721 -7.2683 -7.9701 24 1 6.1954 -7.4979 -9.2148 25 1 8.3557 -6.8565 -8.3184 26 1 7.0140 -8.5219 -7.1751 27 6 3.4840 -3.3845 -7.1271 28 6 2.7910 -2.5707 -6.2767 29 7 2.8263 -2.7564 -4.9696 30 1 -0.3633 0.0028 1.0277 31 1 -0.3633 0.8886 -0.5162 32 1 -0.3633 -0.8913 -0.5114 33 1 1.9702 2.1170 -0.0004 34 1 1.1265 -3.1643 1.9646 35 1 2.8212 -2.5794 1.9608 36 1 3.1748 -4.9599 1.9011 37 1 1.7199 -5.2368 0.8863 38 1 4.3993 -3.9789 0.0792 39 1 3.4705 -5.2510 -0.7716 40 1 4.1165 -4.5281 -2.6072 41 1 4.8502 -5.3945 -4.7398 42 1 7.4806 -5.9795 -5.4966 43 1 3.4415 -3.2238 -8.1942 44 1 2.1997 -1.7625 -6.6811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871728500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:03 Heat of formation + Delta-G solvation = 84.831665 kcal Electronic energy + Delta-G solvation = -29804.405123 eV Core-core repulsion = 25758.038196 eV Total energy + Delta-G solvation = -4046.366927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.08938 -41.59679 -40.16942 -38.49680 -36.12664 -35.98235 -35.54604 -32.86742 -32.44513 -32.32104 -30.20151 -29.31768 -28.38163 -27.92160 -25.26780 -23.84091 -23.60076 -23.20533 -22.67875 -21.77478 -20.65832 -19.50943 -19.25588 -18.23127 -17.64371 -17.35959 -17.19691 -16.98054 -16.33293 -16.07647 -15.99578 -15.81118 -15.70212 -15.02650 -14.80428 -14.44867 -14.36113 -14.31368 -14.16755 -13.91685 -13.69423 -13.30276 -13.14738 -12.88566 -12.78985 -12.70455 -12.49084 -12.23651 -12.08615 -11.86413 -11.74272 -11.54949 -11.35345 -11.27773 -11.19868 -11.06294 -10.31158 -9.92568 -9.78643 -9.64706 -8.87712 -8.59475 -6.58685 0.76302 0.82616 0.98783 1.40799 1.41526 1.54954 1.56784 1.68597 1.92504 2.20431 2.22720 2.81449 2.90636 3.18462 3.50869 3.67210 3.72795 3.74488 3.84428 3.93529 4.09179 4.15457 4.37979 4.44082 4.50872 4.64269 4.65252 4.67618 4.80869 4.84066 4.86784 4.89881 4.95300 5.06619 5.07898 5.17310 5.21504 5.26568 5.33403 5.47086 5.62486 5.82610 5.94882 5.97722 6.21831 6.53307 6.76640 6.80300 6.85214 7.51682 7.75600 7.85346 8.30417 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.016292 B = 0.002957 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.273944 B = 9465.948272 C =10300.078165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.470 5.470 3 C 0.156 3.844 4 N -0.356 5.356 5 N -0.332 5.332 6 C 0.171 3.829 7 C 0.238 3.762 8 H 0.100 0.900 9 C -0.108 4.108 10 C -0.111 4.111 11 C 0.083 3.917 12 N -0.623 5.623 13 C 0.711 3.289 14 O -0.573 6.573 15 N -0.659 5.659 16 C 0.351 3.649 17 C -0.255 4.255 18 C 0.118 3.882 19 C -0.484 4.484 20 H 0.085 0.915 21 C 0.036 3.964 22 N -0.821 5.821 23 Si 0.992 3.008 24 H -0.257 1.257 25 H -0.268 1.268 26 H -0.261 1.261 27 C -0.293 4.293 28 C 0.112 3.888 29 N -0.577 5.577 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.259 0.741 34 H 0.125 0.875 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.416 0.584 41 H 0.125 0.875 42 H 0.291 0.709 43 H 0.118 0.882 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.738 0.813 18.405 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.160 5.160 3 C -0.133 4.133 4 N -0.195 5.195 5 N -0.172 5.172 6 C -0.099 4.099 7 C 0.131 3.869 8 H 0.118 0.882 9 C -0.146 4.146 10 C -0.148 4.148 11 C -0.039 4.039 12 N -0.362 5.362 13 C 0.412 3.588 14 O -0.447 6.447 15 N -0.308 5.308 16 C 0.124 3.876 17 C -0.281 4.281 18 C 0.109 3.891 19 C -0.515 4.515 20 H 0.103 0.897 21 C -0.180 4.180 22 N -0.447 5.447 23 Si 0.812 3.188 24 H -0.180 1.180 25 H -0.193 1.193 26 H -0.185 1.185 27 C -0.317 4.317 28 C -0.042 4.042 29 N -0.297 5.297 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.105 0.895 33 H 0.275 0.725 34 H 0.143 0.857 35 H 0.092 0.908 36 H 0.133 0.867 37 H 0.115 0.885 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.253 0.747 41 H 0.142 0.858 42 H 0.102 0.898 43 H 0.136 0.864 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.059 2.028 18.706 21.825 hybrid contribution 0.197 -0.745 -1.267 1.482 sum -10.862 1.283 17.439 20.585 Atomic orbital electron populations 1.22498 0.72516 1.06414 1.06166 1.46383 1.10855 1.05605 1.53133 1.27156 0.86433 0.96563 1.03120 1.74094 1.20961 1.03672 1.20741 1.74043 1.19371 1.03606 1.20164 1.25452 0.87406 0.93697 1.03387 1.19992 0.94776 0.80395 0.91730 0.88245 1.22722 1.04626 0.96160 0.91126 1.22771 1.00404 0.95869 0.95806 1.22683 0.96429 0.90307 0.94452 1.47606 1.49006 1.36332 1.03268 1.15705 0.80684 0.81720 0.80668 1.90940 1.48215 1.33737 1.71839 1.42446 1.44063 1.40387 1.03873 1.18185 0.93916 0.92484 0.83021 1.21509 1.08179 1.03934 0.94463 1.18001 0.88868 0.90112 0.92109 1.19883 1.07486 1.24004 1.00120 0.89691 1.26855 0.96880 0.98161 0.96145 1.69815 1.18570 1.36433 1.19836 0.85007 0.77886 0.77030 0.78857 1.18040 1.19295 1.18521 1.21885 1.09071 1.00722 1.00053 1.21908 0.96513 0.97649 0.88081 1.67317 1.25931 1.22896 1.13557 0.86499 0.87077 0.89482 0.72508 0.85661 0.90751 0.86667 0.88450 0.91607 0.89641 0.74679 0.85766 0.89843 0.86438 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 11.01 127.77 1.41 2.16 16 2 N -0.47 -11.03 3.15 -542.08 -1.71 -12.73 16 3 C 0.16 3.97 12.74 180.11 2.30 6.26 16 4 N -0.36 -13.01 12.21 -59.99 -0.73 -13.74 16 5 N -0.33 -12.72 12.20 -50.16 -0.61 -13.33 16 6 C 0.17 5.14 5.98 137.98 0.83 5.97 16 7 C 0.24 5.74 3.23 44.59 0.14 5.89 16 8 H 0.10 2.13 6.95 -2.39 -0.02 2.11 16 9 C -0.11 -1.50 6.46 31.78 0.21 -1.30 16 10 C -0.11 -1.32 7.08 31.99 0.23 -1.09 16 11 C 0.08 1.78 6.54 86.85 0.57 2.35 16 12 N -0.62 -19.13 3.05 -809.94 -2.47 -21.60 16 13 C 0.71 30.36 8.24 179.05 1.47 31.83 16 14 O -0.57 -29.10 14.44 -3.98 -0.06 -29.16 16 15 N -0.66 -29.07 5.34 -322.37 -1.72 -30.79 16 16 C 0.35 18.50 7.42 132.76 0.98 19.49 16 17 C -0.25 -13.78 8.60 23.00 0.20 -13.58 16 18 C 0.12 6.50 5.58 -21.12 -0.12 6.38 16 19 C -0.48 -25.67 9.13 23.52 0.21 -25.45 16 20 H 0.08 4.30 7.87 -2.91 -0.02 4.27 16 21 C 0.04 1.74 5.30 85.29 0.45 2.19 16 22 N -0.82 -41.72 10.83 21.84 0.24 -41.48 16 23 Si 0.99 36.84 29.57 68.60 2.03 38.87 16 24 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 25 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 26 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 27 C -0.29 -15.17 9.85 22.60 0.22 -14.94 16 28 C 0.11 5.71 11.10 84.27 0.94 6.64 16 29 N -0.58 -31.79 7.86 -194.28 -1.53 -33.32 16 30 H 0.12 0.53 8.14 -2.39 -0.02 0.52 16 31 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 1.14 7.08 -2.39 -0.02 1.12 16 33 H 0.26 3.61 8.06 -2.91 -0.02 3.58 16 34 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 1.26 7.85 -2.39 -0.02 1.24 16 36 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.09 1.69 7.38 -2.39 -0.02 1.67 16 40 H 0.42 15.60 7.24 -92.71 -0.67 14.93 16 41 H 0.12 6.67 6.27 -2.91 -0.02 6.65 16 42 H 0.29 13.23 8.29 -92.70 -0.77 12.46 16 43 H 0.12 5.51 8.06 -2.91 -0.02 5.48 16 44 H 0.15 6.45 8.06 -2.91 -0.02 6.43 16 Total: -1.00 -89.05 370.18 3.86 -85.19 By element: Atomic # 1 Polarization: 38.92 SS G_CDS: 0.38 Total: 39.30 kcal Atomic # 6 Polarization: 22.76 SS G_CDS: 10.04 Total: 32.79 kcal Atomic # 7 Polarization: -158.47 SS G_CDS: -8.53 Total: -167.00 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.06 Total: -29.16 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.87 kcal Total: -89.05 3.86 -85.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871728500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.022 kcal (2) G-P(sol) polarization free energy of solvation -89.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds