Wall clock time and date at job start Wed Apr 1 2020 00:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.91134 * 2 1 4 4 C 1.54905 * 111.00757 * 236.09526 * 2 1 3 5 5 N 1.47428 * 104.83005 * 204.91596 * 4 2 1 6 6 C 1.34783 * 125.64363 * 204.09303 * 5 4 2 7 7 O 1.21533 * 120.00075 * 0.02562 * 6 5 4 8 8 C 1.47973 * 119.99634 * 180.02562 * 6 5 4 9 9 C 1.39930 * 120.11536 * 179.97438 * 8 6 5 10 10 C 1.38484 * 117.97282 * 179.97438 * 9 8 6 11 11 C 1.39348 * 118.03090 * 0.02562 * 10 9 8 12 12 N 1.39528 * 120.03263 * 179.97438 * 11 10 9 13 13 C 1.37214 * 126.49667 * 184.71519 * 12 11 10 14 14 C 1.34589 * 106.82484 * 179.90095 * 13 12 11 15 15 N 1.34176 * 108.23270 * 0.36633 * 14 13 12 16 16 C 1.30454 * 109.38162 * 359.76628 * 15 14 13 17 17 N 1.32699 * 119.93627 * 0.02562 * 11 10 9 18 18 N 1.28346 * 122.19798 * 359.72492 * 17 11 10 19 19 C 1.47017 * 108.70563 * 24.12485 * 5 4 2 20 20 C 1.54324 * 107.27321 * 358.94388 * 19 5 4 21 21 H 1.08995 * 110.72617 * 96.34448 * 20 19 5 22 22 N 1.46499 * 110.72129 * 219.44397 * 20 19 5 23 23 C 1.36931 * 120.00122 * 273.54344 * 22 20 19 24 24 H 1.08002 * 120.00098 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00429 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99535 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00187 * 180.27849 * 25 23 22 28 28 H 1.48497 * 109.47173 * 179.72427 * 27 25 23 29 29 H 1.48506 * 109.46866 * 299.71963 * 27 25 23 30 30 H 1.48501 * 109.47438 * 59.72083 * 27 25 23 31 31 H 1.09000 * 109.47369 * 296.10135 * 1 2 3 32 32 H 1.08999 * 109.47009 * 56.10715 * 1 2 3 33 33 H 1.09002 * 109.46507 * 176.10181 * 1 2 3 34 34 H 1.09001 * 110.36963 * 86.07513 * 4 2 1 35 35 H 1.09000 * 110.45879 * 323.79471 * 4 2 1 36 36 H 1.08000 * 121.01385 * 0.02562 * 9 8 6 37 37 H 1.07997 * 120.98457 * 180.02562 * 10 9 8 38 38 H 1.08010 * 126.58897 * 0.03389 * 13 12 11 39 39 H 1.08004 * 125.88289 * 180.12554 * 14 13 12 40 40 H 1.08001 * 125.72524 * 179.97438 * 16 15 14 41 41 H 1.09000 * 109.88283 * 239.52716 * 19 5 4 42 42 H 1.09004 * 110.01221 * 118.43143 * 19 5 4 43 43 H 0.97001 * 119.99790 * 93.53861 * 22 20 19 44 44 H 0.97005 * 119.99717 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4272 -1.2430 -0.7731 6 6 4.4478 -1.5615 -1.5938 7 8 4.3007 -1.4997 -2.7986 8 6 5.7473 -1.9864 -1.0278 9 6 6.8084 -2.3182 -1.8776 10 6 8.0048 -2.7095 -1.3005 11 6 8.0788 -2.7495 0.0905 12 7 9.2639 -3.1383 0.7159 13 6 9.4568 -3.3114 2.0633 14 6 10.7381 -3.6890 2.2281 15 7 11.3196 -3.7392 1.0199 16 6 10.4481 -3.4118 0.1060 17 7 7.0207 -2.4184 0.8197 18 7 5.9117 -2.0508 0.2882 19 6 3.4675 -1.2739 0.6962 20 6 2.0862 -0.8078 1.2024 21 1 1.4479 -1.6630 1.4241 22 7 2.2286 0.0498 2.3816 23 6 2.3033 -0.5088 3.6295 24 1 2.2576 -1.5817 3.7445 25 6 2.4377 0.3038 4.7469 26 7 2.4938 1.6113 4.6067 27 14 2.5474 -0.4588 6.4485 28 1 2.6922 0.6151 7.4638 29 1 1.3122 -1.2362 6.7231 30 1 3.7248 -1.3616 6.5115 31 1 -0.3634 0.4521 0.9228 32 1 -0.3633 0.5731 -0.8530 33 1 -0.3632 -1.0253 -0.0699 34 1 2.1560 -0.1721 -2.0837 35 1 1.4526 -1.6705 -1.4041 36 1 6.6979 -2.2697 -2.9508 37 1 8.8554 -2.9758 -1.9103 38 1 8.7212 -3.1734 2.8420 39 1 11.2169 -3.9095 3.1707 40 1 10.6358 -3.3653 -0.9565 41 1 4.2426 -0.5994 1.0601 42 1 3.6663 -2.2881 1.0427 43 1 2.2700 1.0134 2.2783 44 1 2.5881 2.1792 5.3875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939302571.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:35 Heat of formation + Delta-G solvation = 127.506947 kcal Electronic energy + Delta-G solvation = -29117.499001 eV Core-core repulsion = 25072.982612 eV Total energy + Delta-G solvation = -4044.516388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.81221 -41.37319 -39.71593 -37.72119 -35.28523 -34.15056 -33.68487 -32.68696 -31.19312 -30.67119 -29.89835 -27.59747 -26.90904 -25.54399 -24.95700 -23.96935 -22.17832 -21.70082 -21.34497 -20.11216 -20.00819 -19.28025 -18.02327 -17.31495 -17.10706 -16.49460 -15.99000 -15.79586 -15.37858 -15.13793 -14.56259 -14.43132 -14.33458 -14.20546 -14.02748 -13.56855 -13.54397 -13.31940 -13.12317 -12.78928 -12.56932 -12.37555 -11.94243 -11.59614 -11.55110 -11.15548 -10.97418 -10.82796 -10.73670 -10.65633 -10.60991 -10.29534 -10.19851 -10.14015 -9.95431 -9.72360 -9.58292 -8.96933 -8.95315 -8.47843 -7.07436 -5.82809 -3.13221 -0.20259 0.24110 1.61446 1.86414 2.53893 2.74173 2.80658 3.32609 3.42130 3.47182 3.47441 3.50666 3.75957 3.96029 4.05010 4.26767 4.39915 4.54319 4.57924 4.85299 4.90296 5.08632 5.14959 5.16780 5.18339 5.34546 5.43344 5.54729 5.60994 5.71013 5.77020 5.82231 5.87947 5.96619 6.17799 6.25232 6.28558 6.39965 6.42885 6.57876 6.58336 6.63863 6.89938 7.51966 7.52848 7.66340 7.91659 8.13781 8.34407 9.46683 9.99497 10.34420 11.39136 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.008373 B = 0.003659 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3343.080767 B = 7651.515743 C =10736.329136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.085 0.915 4 C 0.113 3.887 5 N -0.586 5.586 6 C 0.584 3.416 7 O -0.543 6.543 8 C 0.018 3.982 9 C -0.034 4.034 10 C -0.138 4.138 11 C 0.302 3.698 12 N -0.410 5.410 13 C -0.019 4.019 14 C -0.027 4.027 15 N -0.473 5.473 16 C 0.192 3.808 17 N -0.244 5.244 18 N -0.154 5.154 19 C 0.080 3.920 20 C 0.174 3.826 21 H 0.066 0.934 22 N -0.709 5.709 23 C -0.245 4.245 24 H 0.072 0.928 25 C -0.007 4.007 26 N -0.931 5.931 27 Si 0.906 3.094 28 H -0.291 1.291 29 H -0.285 1.285 30 H -0.284 1.284 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.174 0.826 37 H 0.164 0.836 38 H 0.189 0.811 39 H 0.180 0.820 40 H 0.214 0.786 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.387 0.613 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.228 -8.783 -13.977 18.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.103 0.897 4 C -0.010 4.010 5 N -0.317 5.317 6 C 0.368 3.632 7 O -0.421 6.421 8 C -0.129 4.129 9 C -0.064 4.064 10 C -0.169 4.169 11 C 0.067 3.933 12 N -0.094 5.094 13 C -0.147 4.147 14 C -0.171 4.171 15 N -0.190 5.190 16 C -0.090 4.090 17 N -0.091 5.091 18 N 0.000 5.000 19 C -0.046 4.046 20 C 0.062 3.938 21 H 0.084 0.916 22 N -0.349 5.349 23 C -0.376 4.376 24 H 0.090 0.910 25 C -0.203 4.203 26 N -0.578 5.578 27 Si 0.737 3.263 28 H -0.217 1.217 29 H -0.212 1.212 30 H -0.211 1.211 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.191 0.809 37 H 0.182 0.818 38 H 0.207 0.793 39 H 0.198 0.802 40 H 0.230 0.770 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.221 0.779 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.301 -8.851 -13.082 18.330 hybrid contribution 0.109 -0.029 -0.137 0.177 sum 9.410 -8.880 -13.218 18.497 Atomic orbital electron populations 1.21611 0.93662 1.01609 1.02213 1.22648 0.96462 0.99841 0.94458 0.89668 1.22403 0.81921 0.98486 0.98154 1.48450 1.11509 1.62508 1.09187 1.17007 0.81901 0.78814 0.85435 1.90786 1.82413 1.55472 1.13466 1.22961 0.96967 1.00850 0.92156 1.22335 0.90010 0.90804 1.03225 1.21919 1.00444 1.01801 0.92736 1.20147 0.87990 0.94768 0.90384 1.42983 1.07841 1.50510 1.08102 1.23178 1.00395 1.06698 0.84435 1.22468 0.91704 1.06156 0.96784 1.70344 1.30498 1.18334 0.99791 1.25425 0.79455 1.03604 1.00481 1.73335 0.95055 1.10042 1.30703 1.73794 1.11497 1.04801 1.09950 1.23590 1.02782 1.02486 0.75701 1.21327 0.91778 0.93801 0.86903 0.91566 1.42323 1.86852 1.05217 1.00514 1.19182 1.43040 0.91893 0.83512 0.91019 1.24732 1.02347 0.95324 0.97926 1.69651 1.56593 1.02289 1.29263 0.86286 0.77968 0.77883 0.84152 1.21711 1.21202 1.21089 0.91185 0.93134 0.92784 0.90516 0.90997 0.80882 0.81809 0.79346 0.80242 0.76983 0.89681 0.91340 0.77893 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.31 37.16 0.35 -1.42 16 2 C -0.11 -1.72 3.25 -88.47 -0.29 -2.00 16 3 H 0.08 1.36 8.00 -51.93 -0.42 0.95 16 4 C 0.11 1.56 6.37 -2.53 -0.02 1.55 16 5 N -0.59 -9.15 3.33 -171.58 -0.57 -9.72 16 6 C 0.58 8.95 7.84 -12.27 -0.10 8.85 16 7 O -0.54 -8.94 16.64 5.34 0.09 -8.85 16 8 C 0.02 0.25 6.80 -82.83 -0.56 -0.32 16 9 C -0.03 -0.33 9.72 -38.86 -0.38 -0.71 16 10 C -0.14 -1.12 9.58 -39.08 -0.37 -1.50 16 11 C 0.30 3.42 7.58 -154.17 -1.17 2.25 16 12 N -0.41 -4.38 2.98 -63.68 -0.19 -4.56 16 13 C -0.02 -0.20 11.19 -16.43 -0.18 -0.39 16 14 C -0.03 -0.29 11.85 -17.82 -0.21 -0.50 16 15 N -0.47 -5.32 11.24 -14.46 -0.16 -5.48 16 16 C 0.19 1.73 11.91 -89.55 -1.07 0.66 16 17 N -0.24 -3.56 11.07 31.34 0.35 -3.22 16 18 N -0.15 -2.38 8.07 33.32 0.27 -2.11 16 19 C 0.08 1.40 5.15 -3.07 -0.02 1.38 16 20 C 0.17 3.19 3.06 -66.09 -0.20 2.99 16 21 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 22 N -0.71 -16.52 5.18 -51.65 -0.27 -16.79 16 23 C -0.25 -6.44 9.98 -15.06 -0.15 -6.59 16 24 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 25 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 26 N -0.93 -27.09 13.06 55.49 0.72 -26.36 16 27 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 30 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.65 8.08 -51.93 -0.42 0.24 16 34 H 0.08 1.02 8.04 -51.93 -0.42 0.61 16 35 H 0.07 0.91 7.99 -51.93 -0.41 0.49 16 36 H 0.17 1.28 7.71 -52.49 -0.40 0.87 16 37 H 0.16 0.60 6.86 -52.49 -0.36 0.24 16 38 H 0.19 1.96 8.06 -52.48 -0.42 1.54 16 39 H 0.18 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.21 0.94 7.11 -52.49 -0.37 0.57 16 41 H 0.08 1.70 7.31 -51.93 -0.38 1.32 16 42 H 0.07 1.22 7.55 -51.93 -0.39 0.83 16 43 H 0.39 9.66 7.71 -40.82 -0.31 9.35 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -33.01 374.43 -9.15 -42.16 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -5.55 Total: 8.55 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -4.46 Total: 3.97 kcal Atomic # 7 Polarization: -68.39 SS G_CDS: 0.15 Total: -68.24 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.01 -9.15 -42.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939302571.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.670 kcal (2) G-P(sol) polarization free energy of solvation -33.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds