Wall clock time and date at job start Wed Apr 1 2020 00:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.91134 * 2 1 4 4 C 1.54905 * 111.00757 * 236.09526 * 2 1 3 5 5 N 1.47428 * 104.83005 * 204.91596 * 4 2 1 6 6 C 1.34783 * 125.64363 * 204.09303 * 5 4 2 7 7 O 1.21533 * 120.00075 * 0.02562 * 6 5 4 8 8 C 1.47973 * 119.99634 * 180.02562 * 6 5 4 9 9 C 1.39930 * 120.11536 * 179.97438 * 8 6 5 10 10 C 1.38484 * 117.97282 * 179.97438 * 9 8 6 11 11 C 1.39348 * 118.03090 * 0.02562 * 10 9 8 12 12 N 1.39528 * 120.03263 * 179.97438 * 11 10 9 13 13 C 1.37214 * 126.49667 * 184.71519 * 12 11 10 14 14 C 1.34589 * 106.82484 * 179.90095 * 13 12 11 15 15 N 1.34176 * 108.23270 * 0.36633 * 14 13 12 16 16 C 1.30454 * 109.38162 * 359.76628 * 15 14 13 17 17 N 1.32699 * 119.93627 * 0.02562 * 11 10 9 18 18 N 1.28346 * 122.19798 * 359.72492 * 17 11 10 19 19 C 1.47017 * 108.70563 * 24.12485 * 5 4 2 20 20 C 1.54324 * 107.27321 * 358.94388 * 19 5 4 21 21 H 1.08995 * 110.72617 * 96.34448 * 20 19 5 22 22 N 1.46499 * 110.72129 * 219.44397 * 20 19 5 23 23 C 1.36931 * 120.00122 * 273.54344 * 22 20 19 24 24 H 1.08002 * 120.00098 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00429 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99535 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00187 * 180.27849 * 25 23 22 28 28 H 1.48497 * 109.47173 * 179.72427 * 27 25 23 29 29 H 1.48506 * 109.46866 * 299.71963 * 27 25 23 30 30 H 1.48501 * 109.47438 * 59.72083 * 27 25 23 31 31 H 1.09000 * 109.47369 * 296.10135 * 1 2 3 32 32 H 1.08999 * 109.47009 * 56.10715 * 1 2 3 33 33 H 1.09002 * 109.46507 * 176.10181 * 1 2 3 34 34 H 1.09001 * 110.36963 * 86.07513 * 4 2 1 35 35 H 1.09000 * 110.45879 * 323.79471 * 4 2 1 36 36 H 1.08000 * 121.01385 * 0.02562 * 9 8 6 37 37 H 1.07997 * 120.98457 * 180.02562 * 10 9 8 38 38 H 1.08010 * 126.58897 * 0.03389 * 13 12 11 39 39 H 1.08004 * 125.88289 * 180.12554 * 14 13 12 40 40 H 1.08001 * 125.72524 * 179.97438 * 16 15 14 41 41 H 1.09000 * 109.88283 * 239.52716 * 19 5 4 42 42 H 1.09004 * 110.01221 * 118.43143 * 19 5 4 43 43 H 0.97001 * 119.99790 * 93.53861 * 22 20 19 44 44 H 0.97005 * 119.99717 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4272 -1.2430 -0.7731 6 6 4.4478 -1.5615 -1.5938 7 8 4.3007 -1.4997 -2.7986 8 6 5.7473 -1.9864 -1.0278 9 6 6.8084 -2.3182 -1.8776 10 6 8.0048 -2.7095 -1.3005 11 6 8.0788 -2.7495 0.0905 12 7 9.2639 -3.1383 0.7159 13 6 9.4568 -3.3114 2.0633 14 6 10.7381 -3.6890 2.2281 15 7 11.3196 -3.7392 1.0199 16 6 10.4481 -3.4118 0.1060 17 7 7.0207 -2.4184 0.8197 18 7 5.9117 -2.0508 0.2882 19 6 3.4675 -1.2739 0.6962 20 6 2.0862 -0.8078 1.2024 21 1 1.4479 -1.6630 1.4241 22 7 2.2286 0.0498 2.3816 23 6 2.3033 -0.5088 3.6295 24 1 2.2576 -1.5817 3.7445 25 6 2.4377 0.3038 4.7469 26 7 2.4938 1.6113 4.6067 27 14 2.5474 -0.4588 6.4485 28 1 2.6922 0.6151 7.4638 29 1 1.3122 -1.2362 6.7231 30 1 3.7248 -1.3616 6.5115 31 1 -0.3634 0.4521 0.9228 32 1 -0.3633 0.5731 -0.8530 33 1 -0.3632 -1.0253 -0.0699 34 1 2.1560 -0.1721 -2.0837 35 1 1.4526 -1.6705 -1.4041 36 1 6.6979 -2.2697 -2.9508 37 1 8.8554 -2.9758 -1.9103 38 1 8.7212 -3.1734 2.8420 39 1 11.2169 -3.9095 3.1707 40 1 10.6358 -3.3653 -0.9565 41 1 4.2426 -0.5994 1.0601 42 1 3.6663 -2.2881 1.0427 43 1 2.2700 1.0134 2.2783 44 1 2.5881 2.1792 5.3875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939302571.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:35 Heat of formation + Delta-G solvation = 107.298559 kcal Electronic energy + Delta-G solvation = -29118.375302 eV Core-core repulsion = 25072.982612 eV Total energy + Delta-G solvation = -4045.392690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.60262 -42.31065 -40.91611 -39.03952 -36.17294 -35.86432 -34.54511 -34.04206 -32.57171 -31.98774 -30.67430 -29.17819 -27.99603 -26.51647 -25.89540 -25.75152 -23.34856 -22.60994 -22.28454 -21.42656 -21.20743 -20.06195 -19.10663 -18.99288 -18.34686 -17.49513 -17.12337 -17.10301 -16.46485 -16.11973 -15.96545 -15.41954 -15.33023 -15.21327 -15.08296 -14.94287 -14.66330 -14.58831 -14.24109 -14.17164 -13.80038 -13.63954 -13.09411 -12.96787 -12.84760 -12.80653 -12.46063 -12.24066 -12.10650 -12.03298 -11.67917 -11.62787 -11.52077 -11.40114 -11.29875 -11.07082 -10.85411 -10.46335 -9.77717 -9.71956 -9.03839 -7.93116 -5.22017 -1.07665 -0.54711 0.77002 1.06768 1.48790 1.51199 1.52009 1.56547 1.69779 1.97323 2.35534 2.54463 2.59621 2.96030 3.08501 3.30398 3.38986 3.52398 3.65136 3.66175 3.82137 3.82673 3.91641 4.18354 4.23713 4.35109 4.38449 4.44194 4.48055 4.59917 4.65243 4.66758 4.72187 4.90777 4.97727 4.99476 5.10570 5.17607 5.21221 5.35568 5.50215 5.50912 5.56510 5.91541 6.24958 6.29167 6.73441 6.77555 7.19547 7.35615 8.07135 8.30994 9.29674 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.008373 B = 0.003659 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3343.080767 B = 7651.515743 C =10736.329136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 H 0.072 0.928 4 C 0.116 3.884 5 N -0.592 5.592 6 C 0.585 3.415 7 O -0.553 6.553 8 C -0.002 4.002 9 C -0.025 4.025 10 C -0.110 4.110 11 C 0.297 3.703 12 N -0.417 5.417 13 C -0.047 4.047 14 C -0.027 4.027 15 N -0.505 5.505 16 C 0.209 3.791 17 N -0.285 5.285 18 N -0.192 5.192 19 C 0.104 3.896 20 C 0.167 3.833 21 H 0.069 0.931 22 N -0.720 5.720 23 C -0.238 4.238 24 H 0.076 0.924 25 C -0.068 4.068 26 N -0.967 5.967 27 Si 0.965 3.035 28 H -0.298 1.298 29 H -0.276 1.276 30 H -0.282 1.282 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.202 0.798 37 H 0.221 0.779 38 H 0.181 0.819 39 H 0.196 0.804 40 H 0.262 0.738 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.375 0.625 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.282 -10.349 -16.706 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.124 4.124 3 H 0.090 0.910 4 C -0.006 4.006 5 N -0.323 5.323 6 C 0.371 3.629 7 O -0.432 6.432 8 C -0.151 4.151 9 C -0.054 4.054 10 C -0.140 4.140 11 C 0.062 3.938 12 N -0.101 5.101 13 C -0.175 4.175 14 C -0.170 4.170 15 N -0.222 5.222 16 C -0.072 4.072 17 N -0.132 5.132 18 N -0.037 5.037 19 C -0.022 4.022 20 C 0.056 3.944 21 H 0.087 0.913 22 N -0.358 5.358 23 C -0.370 4.370 24 H 0.094 0.906 25 C -0.260 4.260 26 N -0.617 5.617 27 Si 0.794 3.206 28 H -0.224 1.224 29 H -0.202 1.202 30 H -0.208 1.208 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.219 0.781 37 H 0.237 0.763 38 H 0.198 0.802 39 H 0.213 0.787 40 H 0.278 0.722 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.208 0.792 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.349 -10.464 -15.829 21.613 hybrid contribution -0.108 0.389 0.583 0.709 sum 10.240 -10.075 -15.246 20.948 Atomic orbital electron populations 1.21566 0.91952 1.02821 1.02117 1.22547 0.97785 0.98768 0.93260 0.90957 1.22487 0.81317 0.99172 0.97577 1.48450 1.12534 1.63106 1.08175 1.17246 0.82280 0.78149 0.85244 1.90768 1.82776 1.55993 1.13638 1.22959 0.97383 1.02255 0.92473 1.22658 0.89160 0.89556 1.04035 1.22466 1.01328 0.98850 0.91345 1.20420 0.87392 0.94200 0.91791 1.43118 1.08138 1.50848 1.08046 1.23220 1.00752 1.08413 0.85082 1.22781 0.91468 1.05187 0.97542 1.70381 1.31427 1.19996 1.00351 1.26435 0.78032 1.00606 1.02093 1.73164 0.95996 1.11869 1.32169 1.73679 1.12527 1.06359 1.11172 1.22997 1.00878 1.01129 0.77160 1.21532 0.92433 0.93812 0.86599 0.91300 1.42423 1.87036 1.05138 1.01246 1.19539 1.40610 0.92117 0.84749 0.90569 1.25443 1.03553 0.95756 1.01256 1.69799 1.58943 1.03445 1.29541 0.85340 0.78159 0.76886 0.80170 1.22395 1.20167 1.20831 0.93524 0.90570 0.91300 0.89412 0.89014 0.78056 0.76277 0.80159 0.78685 0.72217 0.92613 0.92058 0.79240 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.31 71.98 0.67 -2.52 16 2 C -0.10 -3.08 3.25 -9.40 -0.03 -3.11 16 3 H 0.07 2.34 8.00 -2.38 -0.02 2.32 16 4 C 0.12 3.04 6.37 86.85 0.55 3.59 16 5 N -0.59 -18.26 3.33 -815.05 -2.71 -20.97 16 6 C 0.58 17.38 7.84 86.82 0.68 18.06 16 7 O -0.55 -17.12 16.64 -3.82 -0.06 -17.18 16 8 C 0.00 -0.06 6.80 41.99 0.29 0.22 16 9 C -0.03 -0.41 9.72 22.74 0.22 -0.19 16 10 C -0.11 -1.34 9.58 22.60 0.22 -1.13 16 11 C 0.30 6.24 7.58 132.85 1.01 7.25 16 12 N -0.42 -8.19 2.98 -355.39 -1.06 -9.25 16 13 C -0.05 -1.03 11.19 83.01 0.93 -0.10 16 14 C -0.03 -0.55 11.85 83.50 0.99 0.44 16 15 N -0.50 -10.33 11.24 -199.65 -2.24 -12.58 16 16 C 0.21 3.08 11.91 179.97 2.14 5.23 16 17 N -0.29 -8.48 11.07 -54.76 -0.61 -9.08 16 18 N -0.19 -6.05 8.07 -48.49 -0.39 -6.44 16 19 C 0.10 3.76 5.15 86.73 0.45 4.21 16 20 C 0.17 6.20 3.06 46.18 0.14 6.34 16 21 H 0.07 2.53 8.02 -2.39 -0.02 2.51 16 22 N -0.72 -34.63 5.18 -317.33 -1.64 -36.28 16 23 C -0.24 -12.81 9.98 84.03 0.84 -11.97 16 24 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 25 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 26 N -0.97 -58.21 13.06 21.65 0.28 -57.93 16 27 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 28 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 29 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 30 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 1.53 8.08 -2.39 -0.02 1.51 16 34 H 0.09 2.15 8.04 -2.39 -0.02 2.13 16 35 H 0.09 2.07 7.99 -2.39 -0.02 2.05 16 36 H 0.20 2.09 7.71 -2.91 -0.02 2.07 16 37 H 0.22 0.09 6.86 -2.91 -0.02 0.07 16 38 H 0.18 4.08 8.06 -2.91 -0.02 4.06 16 39 H 0.20 2.99 8.06 -2.91 -0.02 2.97 16 40 H 0.26 0.77 7.11 -2.91 -0.02 0.75 16 41 H 0.06 2.35 7.31 -2.39 -0.02 2.34 16 42 H 0.06 2.27 7.55 -2.38 -0.02 2.25 16 43 H 0.38 19.59 7.71 -92.71 -0.72 18.87 16 44 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 Total: -1.00 -75.48 374.43 3.48 -72.00 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.33 Total: 26.92 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 9.56 Total: 22.99 kcal Atomic # 7 Polarization: -144.15 SS G_CDS: -8.37 Total: -152.52 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.06 Total: -17.18 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -75.48 3.48 -72.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939302571.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.295 kcal (2) G-P(sol) polarization free energy of solvation -75.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds