Wall clock time and date at job start Wed Apr 1 2020 00:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47058 * 2 1 4 4 N 1.46495 * 109.47545 * 120.00598 * 2 1 3 5 5 C 1.34782 * 119.99593 * 275.00144 * 4 2 1 6 6 O 1.21535 * 120.00076 * 359.97438 * 5 4 2 7 7 C 1.47984 * 119.99763 * 179.97438 * 5 4 2 8 8 C 1.39928 * 120.11378 * 179.72381 * 7 5 4 9 9 C 1.38473 * 117.97055 * 179.73741 * 8 7 5 10 10 C 1.39353 * 118.03207 * 0.53011 * 9 8 7 11 11 N 1.39518 * 120.03215 * 179.75036 * 10 9 8 12 12 C 1.37228 * 126.49526 * 184.68542 * 11 10 9 13 13 C 1.34589 * 106.82380 * 179.83986 * 12 11 10 14 14 N 1.34173 * 108.23531 * 0.42971 * 13 12 11 15 15 C 1.30459 * 109.38249 * 359.72436 * 14 13 12 16 16 N 1.32697 * 119.93552 * 359.72264 * 10 9 8 17 17 N 1.28359 * 122.19407 * 0.02562 * 16 10 9 18 18 C 1.53006 * 109.46965 * 240.00413 * 2 1 3 19 19 C 1.53497 * 114.20590 * 174.71570 * 18 2 1 20 20 N 1.47062 * 87.98889 * 220.34720 * 19 18 2 21 21 C 1.36934 * 136.06073 * 207.09188 * 20 19 18 22 22 H 1.08001 * 120.00026 * 6.47907 * 21 20 19 23 23 C 1.38805 * 120.00345 * 186.48472 * 21 20 19 24 24 N 1.31621 * 119.99799 * 6.26684 * 23 21 20 25 25 Si 1.86798 * 120.00357 * 186.26795 * 23 21 20 26 26 H 1.48507 * 109.47008 * 265.00931 * 25 23 21 27 27 H 1.48498 * 109.47125 * 25.00956 * 25 23 21 28 28 H 1.48499 * 109.47537 * 145.01308 * 25 23 21 29 29 C 1.47068 * 87.88330 * 27.33967 * 20 19 18 30 30 H 1.09008 * 109.47161 * 184.88094 * 1 2 3 31 31 H 1.09001 * 109.47003 * 304.87675 * 1 2 3 32 32 H 1.08996 * 109.47162 * 64.88035 * 1 2 3 33 33 H 0.96993 * 120.00462 * 94.99632 * 4 2 1 34 34 H 1.08002 * 121.01277 * 359.97438 * 8 7 5 35 35 H 1.07997 * 120.98758 * 180.25319 * 9 8 7 36 36 H 1.08000 * 126.58712 * 359.96886 * 12 11 10 37 37 H 1.08011 * 125.88375 * 180.13516 * 13 12 11 38 38 H 1.08001 * 125.72247 * 179.97438 * 15 14 13 39 39 H 1.08994 * 113.41243 * 307.91400 * 18 2 1 40 40 H 1.09000 * 113.46682 * 105.56058 * 19 18 2 41 41 H 1.09008 * 113.52408 * 335.13690 * 19 18 2 42 42 H 0.97005 * 119.99736 * 179.97438 * 24 23 21 43 43 H 1.09006 * 113.46025 * 87.44010 * 29 20 19 44 44 H 1.09003 * 113.47098 * 217.87906 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3571 6 8 1.8584 1.1610 2.4116 7 6 2.6399 -0.7162 3.5654 8 6 2.7800 -0.0191 4.7706 9 6 3.2396 -0.7169 5.8748 10 6 3.5450 -2.0672 5.7157 11 7 4.0163 -2.8090 6.7993 12 6 4.4403 -4.1138 6.7726 13 6 4.8107 -4.4289 8.0275 14 7 4.6121 -3.3544 8.8062 15 6 4.1368 -2.3778 8.0834 16 7 3.3868 -2.6470 4.5326 17 7 2.9563 -2.0043 3.5082 18 6 2.0399 -0.7212 -1.2494 19 6 3.5641 -0.6739 -1.4253 20 7 3.3396 -0.4639 -2.8634 21 6 4.0309 -0.7208 -4.0172 22 1 4.9487 -1.2889 -3.9816 23 6 3.5522 -0.2509 -5.2324 24 7 2.5037 0.5440 -5.2637 25 14 4.3961 -0.7468 -6.8234 26 1 5.3782 0.2983 -7.2094 27 1 5.1001 -2.0397 -6.6283 28 1 3.3812 -0.8930 -7.8975 29 6 2.0485 0.1492 -2.5168 30 1 -0.3634 -1.0240 0.0874 31 1 -0.3633 0.5876 0.8431 32 1 -0.3633 0.4362 -0.9304 33 1 2.2491 -1.6318 1.1524 34 1 2.5334 1.0302 4.8385 35 1 3.3620 -0.2281 6.8301 36 1 4.4727 -4.7626 5.9097 37 1 5.1966 -5.3838 8.3529 38 1 3.8815 -1.3925 8.4444 39 1 1.6048 -1.7111 -1.3859 40 1 4.0570 -1.6187 -1.1962 41 1 4.0330 0.1767 -0.9304 42 1 2.1694 0.8726 -6.1130 43 1 2.1169 1.2171 -2.3095 44 1 1.2501 -0.0944 -3.2178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970581234.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:31 Heat of formation + Delta-G solvation = 160.171242 kcal Electronic energy + Delta-G solvation = -28164.668951 eV Core-core repulsion = 24121.568993 eV Total energy + Delta-G solvation = -4043.099958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.01815 -41.56673 -39.80763 -38.25876 -35.49424 -35.08509 -33.88936 -32.35755 -31.70412 -30.35437 -30.02635 -27.57353 -26.26457 -25.39388 -24.62473 -24.10715 -22.49709 -21.88354 -21.50859 -20.63282 -19.65044 -19.46381 -18.21257 -17.91084 -16.80791 -16.65907 -16.03039 -15.58469 -15.51608 -15.20602 -14.81068 -14.57805 -14.55346 -14.40534 -14.21315 -14.01928 -13.74237 -13.62207 -13.25146 -12.57887 -12.38902 -12.19385 -11.79536 -11.68894 -11.43187 -11.28291 -11.03796 -10.95521 -10.83044 -10.75615 -10.51320 -10.41498 -10.37030 -9.94204 -9.84551 -9.79818 -9.26538 -9.15845 -9.02660 -8.80147 -6.91124 -5.81381 -3.12205 -0.42135 0.01205 1.41111 1.64656 2.36240 2.55608 2.76873 3.14786 3.28521 3.37512 3.42673 3.44936 3.53546 3.77148 3.91416 4.11227 4.27168 4.41504 4.43084 4.72111 4.92674 4.96034 5.07364 5.13152 5.13925 5.26604 5.34100 5.48614 5.55817 5.59033 5.73737 5.91250 6.00285 6.08434 6.16586 6.31537 6.41481 6.42922 6.45032 6.58754 6.69927 7.14382 7.29707 7.32653 7.36579 7.49286 7.80659 7.93824 7.98174 9.00826 9.67200 10.61400 11.37473 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.019154 B = 0.001981 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.453409 B =14130.404790 C =15171.644270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.152 3.848 3 H 0.092 0.908 4 N -0.691 5.691 5 C 0.574 3.426 6 O -0.527 6.527 7 C 0.021 3.979 8 C -0.032 4.032 9 C -0.135 4.135 10 C 0.304 3.696 11 N -0.411 5.411 12 C -0.023 4.023 13 C -0.025 4.025 14 N -0.472 5.472 15 C 0.195 3.805 16 N -0.247 5.247 17 N -0.172 5.172 18 C -0.156 4.156 19 C 0.124 3.876 20 N -0.609 5.609 21 C -0.219 4.219 22 H 0.081 0.919 23 C -0.008 4.008 24 N -0.919 5.919 25 Si 0.913 3.087 26 H -0.289 1.289 27 H -0.280 1.280 28 H -0.289 1.289 29 C 0.176 3.824 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.411 0.589 34 H 0.176 0.824 35 H 0.166 0.834 36 H 0.188 0.812 37 H 0.181 0.819 38 H 0.215 0.785 39 H 0.095 0.905 40 H 0.039 0.961 41 H 0.030 0.970 42 H 0.254 0.746 43 H 0.031 0.969 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.515 -4.448 26.683 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.110 0.890 4 N -0.341 5.341 5 C 0.355 3.645 6 O -0.403 6.403 7 C -0.127 4.127 8 C -0.062 4.062 9 C -0.166 4.166 10 C 0.069 3.931 11 N -0.095 5.095 12 C -0.151 4.151 13 C -0.168 4.168 14 N -0.189 5.189 15 C -0.086 4.086 16 N -0.095 5.095 17 N -0.019 5.019 18 C -0.176 4.176 19 C -0.003 4.003 20 N -0.335 5.335 21 C -0.347 4.347 22 H 0.099 0.901 23 C -0.205 4.205 24 N -0.566 5.566 25 Si 0.743 3.257 26 H -0.216 1.216 27 H -0.205 1.205 28 H -0.216 1.216 29 C 0.050 3.950 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.246 0.754 34 H 0.194 0.806 35 H 0.184 0.816 36 H 0.205 0.795 37 H 0.198 0.802 38 H 0.231 0.769 39 H 0.113 0.887 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.064 0.936 43 H 0.049 0.951 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.383 -4.933 26.173 26.670 hybrid contribution 0.398 0.637 -0.863 1.144 sum -0.985 -4.296 25.311 25.692 Atomic orbital electron populations 1.22123 0.94947 1.01966 1.02677 1.21183 0.94100 0.97465 0.82465 0.88980 1.46058 1.64220 1.14817 1.08977 1.17370 0.78720 0.86094 0.82268 1.90829 1.50579 1.14572 1.84316 1.23096 1.00256 0.92870 0.96512 1.22409 0.90968 1.02872 0.89921 1.21968 1.00492 0.92122 1.01996 1.20060 0.94307 0.89742 0.88980 1.42990 1.47936 1.11566 1.07030 1.23113 1.05151 0.85026 1.01809 1.22490 1.05865 0.98967 0.89526 1.70368 1.16054 1.00080 1.32356 1.25485 1.03629 1.01366 0.78168 1.73160 1.11987 1.29381 0.94949 1.73298 1.04028 1.06240 1.18306 1.23746 0.98222 1.01038 0.94582 1.22374 0.92798 0.97937 0.87166 1.45645 1.19024 1.69355 0.99433 1.18942 1.05188 1.27977 0.82548 0.90105 1.24833 0.98752 0.99113 0.97755 1.69843 1.25904 1.35997 1.24846 0.86093 0.78368 0.78077 0.83180 1.21616 1.20498 1.21554 1.21951 0.90183 0.93634 0.89272 0.92535 0.92666 0.90686 0.75358 0.80616 0.81646 0.79471 0.80219 0.76862 0.88683 0.94302 0.95238 0.93586 0.95132 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.47 37.16 0.35 -1.70 16 2 C 0.15 2.19 2.34 -67.93 -0.16 2.03 16 3 H 0.09 1.50 7.43 -51.93 -0.39 1.11 16 4 N -0.69 -8.74 4.95 -54.71 -0.27 -9.01 16 5 C 0.57 7.24 7.77 -12.26 -0.10 7.15 16 6 O -0.53 -7.87 16.05 5.33 0.09 -7.78 16 7 C 0.02 0.21 6.83 -82.84 -0.57 -0.35 16 8 C -0.03 -0.23 9.72 -38.86 -0.38 -0.61 16 9 C -0.14 -0.76 9.58 -39.08 -0.37 -1.14 16 10 C 0.30 2.50 7.58 -154.18 -1.17 1.33 16 11 N -0.41 -3.20 2.98 -63.68 -0.19 -3.39 16 12 C -0.02 -0.18 11.19 -16.43 -0.18 -0.36 16 13 C -0.02 -0.19 11.85 -17.82 -0.21 -0.40 16 14 N -0.47 -4.24 11.24 -14.45 -0.16 -4.41 16 15 C 0.20 1.31 11.91 -89.54 -1.07 0.24 16 16 N -0.25 -2.60 11.07 31.34 0.35 -2.25 16 17 N -0.17 -1.90 10.73 33.32 0.36 -1.55 16 18 C -0.16 -2.69 3.52 -89.97 -0.32 -3.00 16 19 C 0.12 2.48 8.14 -8.52 -0.07 2.41 16 20 N -0.61 -15.53 3.76 -184.61 -0.69 -16.22 16 21 C -0.22 -6.15 10.73 -15.06 -0.16 -6.32 16 22 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 24 N -0.92 -27.21 11.80 55.49 0.65 -26.55 16 25 Si 0.91 22.07 29.56 -169.99 -5.02 17.04 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 C 0.18 3.98 6.79 -8.38 -0.06 3.92 16 30 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.41 4.76 7.95 -40.82 -0.32 4.44 16 34 H 0.18 0.97 7.71 -52.49 -0.40 0.57 16 35 H 0.17 0.26 6.86 -52.49 -0.36 -0.10 16 36 H 0.19 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.18 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.22 0.50 7.11 -52.49 -0.37 0.13 16 39 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.03 0.60 8.11 -51.92 -0.42 0.18 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.03 0.72 8.00 -51.93 -0.42 0.30 16 44 H 0.06 1.57 7.57 -51.93 -0.39 1.18 16 LS Contribution 380.10 15.07 5.73 5.73 Total: -1.00 -35.16 380.10 -9.30 -44.47 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.58 Total: 1.03 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -4.55 Total: 2.89 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: 0.04 Total: -63.37 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.09 Total: -7.78 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.16 -9.30 -44.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970581234.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.637 kcal (2) G-P(sol) polarization free energy of solvation -35.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds