Wall clock time and date at job start Wed Apr 1 2020 00:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47058 * 2 1 4 4 N 1.46495 * 109.47545 * 120.00598 * 2 1 3 5 5 C 1.34782 * 119.99593 * 275.00144 * 4 2 1 6 6 O 1.21535 * 120.00076 * 359.97438 * 5 4 2 7 7 C 1.47984 * 119.99763 * 179.97438 * 5 4 2 8 8 C 1.39928 * 120.11378 * 179.72381 * 7 5 4 9 9 C 1.38473 * 117.97055 * 179.73741 * 8 7 5 10 10 C 1.39353 * 118.03207 * 0.53011 * 9 8 7 11 11 N 1.39518 * 120.03215 * 179.75036 * 10 9 8 12 12 C 1.37228 * 126.49526 * 184.68542 * 11 10 9 13 13 C 1.34589 * 106.82380 * 179.83986 * 12 11 10 14 14 N 1.34173 * 108.23531 * 0.42971 * 13 12 11 15 15 C 1.30459 * 109.38249 * 359.72436 * 14 13 12 16 16 N 1.32697 * 119.93552 * 359.72264 * 10 9 8 17 17 N 1.28359 * 122.19407 * 0.02562 * 16 10 9 18 18 C 1.53006 * 109.46965 * 240.00413 * 2 1 3 19 19 C 1.53497 * 114.20590 * 174.71570 * 18 2 1 20 20 N 1.47062 * 87.98889 * 220.34720 * 19 18 2 21 21 C 1.36934 * 136.06073 * 207.09188 * 20 19 18 22 22 H 1.08001 * 120.00026 * 6.47907 * 21 20 19 23 23 C 1.38805 * 120.00345 * 186.48472 * 21 20 19 24 24 N 1.31621 * 119.99799 * 6.26684 * 23 21 20 25 25 Si 1.86798 * 120.00357 * 186.26795 * 23 21 20 26 26 H 1.48507 * 109.47008 * 265.00931 * 25 23 21 27 27 H 1.48498 * 109.47125 * 25.00956 * 25 23 21 28 28 H 1.48499 * 109.47537 * 145.01308 * 25 23 21 29 29 C 1.47068 * 87.88330 * 27.33967 * 20 19 18 30 30 H 1.09008 * 109.47161 * 184.88094 * 1 2 3 31 31 H 1.09001 * 109.47003 * 304.87675 * 1 2 3 32 32 H 1.08996 * 109.47162 * 64.88035 * 1 2 3 33 33 H 0.96993 * 120.00462 * 94.99632 * 4 2 1 34 34 H 1.08002 * 121.01277 * 359.97438 * 8 7 5 35 35 H 1.07997 * 120.98758 * 180.25319 * 9 8 7 36 36 H 1.08000 * 126.58712 * 359.96886 * 12 11 10 37 37 H 1.08011 * 125.88375 * 180.13516 * 13 12 11 38 38 H 1.08001 * 125.72247 * 179.97438 * 15 14 13 39 39 H 1.08994 * 113.41243 * 307.91400 * 18 2 1 40 40 H 1.09000 * 113.46682 * 105.56058 * 19 18 2 41 41 H 1.09008 * 113.52408 * 335.13690 * 19 18 2 42 42 H 0.97005 * 119.99736 * 179.97438 * 24 23 21 43 43 H 1.09006 * 113.46025 * 87.44010 * 29 20 19 44 44 H 1.09003 * 113.47098 * 217.87906 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3571 6 8 1.8584 1.1610 2.4116 7 6 2.6399 -0.7162 3.5654 8 6 2.7800 -0.0191 4.7706 9 6 3.2396 -0.7169 5.8748 10 6 3.5450 -2.0672 5.7157 11 7 4.0163 -2.8090 6.7993 12 6 4.4403 -4.1138 6.7726 13 6 4.8107 -4.4289 8.0275 14 7 4.6121 -3.3544 8.8062 15 6 4.1368 -2.3778 8.0834 16 7 3.3868 -2.6470 4.5326 17 7 2.9563 -2.0043 3.5082 18 6 2.0399 -0.7212 -1.2494 19 6 3.5641 -0.6739 -1.4253 20 7 3.3396 -0.4639 -2.8634 21 6 4.0309 -0.7208 -4.0172 22 1 4.9487 -1.2889 -3.9816 23 6 3.5522 -0.2509 -5.2324 24 7 2.5037 0.5440 -5.2637 25 14 4.3961 -0.7468 -6.8234 26 1 5.3782 0.2983 -7.2094 27 1 5.1001 -2.0397 -6.6283 28 1 3.3812 -0.8930 -7.8975 29 6 2.0485 0.1492 -2.5168 30 1 -0.3634 -1.0240 0.0874 31 1 -0.3633 0.5876 0.8431 32 1 -0.3633 0.4362 -0.9304 33 1 2.2491 -1.6318 1.1524 34 1 2.5334 1.0302 4.8385 35 1 3.3620 -0.2281 6.8301 36 1 4.4727 -4.7626 5.9097 37 1 5.1966 -5.3838 8.3529 38 1 3.8815 -1.3925 8.4444 39 1 1.6048 -1.7111 -1.3859 40 1 4.0570 -1.6187 -1.1962 41 1 4.0330 0.1767 -0.9304 42 1 2.1694 0.8726 -6.1130 43 1 2.1169 1.2171 -2.3095 44 1 1.2501 -0.0944 -3.2178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970581234.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:30 Heat of formation + Delta-G solvation = 137.699693 kcal Electronic energy + Delta-G solvation = -28165.643391 eV Core-core repulsion = 24121.568993 eV Total energy + Delta-G solvation = -4044.074398 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.57111 -42.25099 -40.94130 -39.75480 -36.38435 -36.08150 -34.51969 -34.23103 -32.66167 -31.34713 -30.61615 -29.40044 -27.05743 -26.32397 -25.97668 -25.70996 -23.54411 -22.55639 -22.35339 -21.64150 -21.08511 -20.07719 -19.17061 -18.82646 -18.56692 -17.33183 -17.17467 -16.84679 -16.35861 -16.16264 -16.06389 -15.85866 -15.37184 -15.19326 -15.05799 -14.91761 -14.85656 -14.69544 -14.25062 -14.10646 -13.47497 -13.30316 -13.22269 -13.06636 -13.03739 -12.71059 -12.46891 -12.39207 -12.08931 -11.89554 -11.64477 -11.59800 -11.41098 -11.25521 -11.09208 -11.00460 -10.87082 -10.45105 -10.14507 -9.68834 -8.95520 -7.95120 -5.27303 -1.06076 -0.54423 0.81013 1.08789 1.44948 1.46540 1.56228 1.58727 1.83895 2.01152 2.39907 2.45766 2.60337 2.97352 3.16916 3.28141 3.39465 3.41663 3.59904 3.69461 3.73302 3.85871 3.95619 4.22410 4.24747 4.38762 4.44114 4.48650 4.54176 4.62650 4.74277 4.76535 4.81813 4.85737 4.93058 5.01622 5.05188 5.20064 5.30900 5.41100 5.48882 5.55719 5.61578 5.89649 5.93353 6.35553 6.80860 6.88481 6.96350 7.16759 7.56859 8.58306 9.23967 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.019154 B = 0.001981 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.453409 B =14130.404790 C =15171.644270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.164 3.836 3 H 0.074 0.926 4 N -0.689 5.689 5 C 0.577 3.423 6 O -0.553 6.553 7 C 0.006 3.994 8 C -0.029 4.029 9 C -0.111 4.111 10 C 0.299 3.701 11 N -0.417 5.417 12 C -0.041 4.041 13 C -0.031 4.031 14 N -0.508 5.508 15 C 0.206 3.794 16 N -0.274 5.274 17 N -0.191 5.191 18 C -0.116 4.116 19 C 0.125 3.875 20 N -0.643 5.643 21 C -0.233 4.233 22 H 0.084 0.916 23 C -0.067 4.067 24 N -0.953 5.953 25 Si 0.981 3.019 26 H -0.288 1.288 27 H -0.266 1.266 28 H -0.292 1.292 29 C 0.173 3.827 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.417 0.583 34 H 0.196 0.804 35 H 0.215 0.785 36 H 0.191 0.809 37 H 0.196 0.804 38 H 0.258 0.742 39 H 0.108 0.892 40 H 0.053 0.947 41 H 0.031 0.969 42 H 0.250 0.750 43 H 0.016 0.984 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.197 -4.687 29.083 29.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.059 3.941 3 H 0.092 0.908 4 N -0.339 5.339 5 C 0.361 3.639 6 O -0.430 6.430 7 C -0.142 4.142 8 C -0.058 4.058 9 C -0.141 4.141 10 C 0.065 3.935 11 N -0.101 5.101 12 C -0.169 4.169 13 C -0.174 4.174 14 N -0.225 5.225 15 C -0.075 4.075 16 N -0.121 5.121 17 N -0.038 5.038 18 C -0.136 4.136 19 C -0.001 4.001 20 N -0.368 5.368 21 C -0.361 4.361 22 H 0.102 0.898 23 C -0.260 4.260 24 N -0.601 5.601 25 Si 0.809 3.191 26 H -0.215 1.215 27 H -0.191 1.191 28 H -0.218 1.218 29 C 0.047 3.953 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.254 0.746 34 H 0.213 0.787 35 H 0.231 0.769 36 H 0.208 0.792 37 H 0.213 0.787 38 H 0.273 0.727 39 H 0.126 0.874 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.059 0.941 43 H 0.034 0.966 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.044 -5.219 28.618 29.109 hybrid contribution 0.346 0.709 -1.454 1.654 sum -0.698 -4.511 27.164 27.545 Atomic orbital electron populations 1.22061 0.93412 1.03037 1.02579 1.20843 0.95143 0.96092 0.82037 0.90790 1.45901 1.64427 1.15026 1.08559 1.17615 0.77895 0.85764 0.82668 1.90813 1.51678 1.15666 1.84846 1.22845 1.01675 0.93126 0.96568 1.22648 0.90409 1.03650 0.89077 1.22432 0.97724 0.90638 1.03303 1.20292 0.93946 0.90846 0.88444 1.43111 1.48120 1.11571 1.07319 1.23282 1.05926 0.85580 1.02098 1.22820 1.05526 0.99543 0.89506 1.70385 1.17693 1.01064 1.33326 1.26374 1.01443 1.02340 0.77318 1.73047 1.13115 1.30100 0.95876 1.73231 1.04896 1.06634 1.19041 1.23364 0.96269 1.00484 0.93454 1.22492 0.94884 0.98421 0.84266 1.46054 1.20183 1.69637 1.00968 1.19344 1.05302 1.27477 0.83942 0.89779 1.25699 0.99729 0.99589 1.01028 1.70021 1.27504 1.37433 1.25173 0.85030 0.77166 0.78108 0.78826 1.21477 1.19063 1.21809 1.21897 0.88549 0.93651 0.91250 0.90962 0.92194 0.91275 0.74594 0.78733 0.76850 0.79180 0.78743 0.72677 0.87374 0.92852 0.95150 0.94119 0.96588 0.94619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.47 71.98 0.68 -3.11 16 2 C 0.16 4.64 2.34 44.99 0.11 4.75 16 3 H 0.07 2.42 7.43 -2.39 -0.02 2.40 16 4 N -0.69 -16.74 4.95 -445.28 -2.21 -18.95 16 5 C 0.58 13.95 7.77 86.83 0.68 14.62 16 6 O -0.55 -15.95 16.05 -3.83 -0.06 -16.01 16 7 C 0.01 0.12 6.83 42.00 0.29 0.40 16 8 C -0.03 -0.33 9.72 22.74 0.22 -0.11 16 9 C -0.11 -0.81 9.58 22.59 0.22 -0.59 16 10 C 0.30 4.19 7.58 132.85 1.01 5.20 16 11 N -0.42 -5.53 2.98 -355.39 -1.06 -6.58 16 12 C -0.04 -0.60 11.19 83.01 0.93 0.33 16 13 C -0.03 -0.45 11.85 83.50 0.99 0.54 16 14 N -0.51 -8.14 11.24 -199.64 -2.24 -10.38 16 15 C 0.21 2.11 11.91 179.97 2.14 4.25 16 16 N -0.27 -5.43 11.07 -54.77 -0.61 -6.04 16 17 N -0.19 -4.04 10.73 -48.49 -0.52 -4.56 16 18 C -0.12 -3.97 3.52 -10.37 -0.04 -4.00 16 19 C 0.12 4.97 8.14 83.17 0.68 5.65 16 20 N -0.64 -33.28 3.76 -737.97 -2.78 -36.06 16 21 C -0.23 -13.22 10.73 84.03 0.90 -12.32 16 22 H 0.08 4.57 7.84 -2.91 -0.02 4.55 16 23 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 24 N -0.95 -57.99 11.80 21.65 0.26 -57.74 16 25 Si 0.98 45.92 29.56 68.60 2.03 47.95 16 26 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 29 C 0.17 8.06 6.79 83.26 0.57 8.62 16 30 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.42 9.19 7.95 -92.71 -0.74 8.45 16 34 H 0.20 1.49 7.71 -2.91 -0.02 1.46 16 35 H 0.21 -0.65 6.86 -2.91 -0.02 -0.67 16 36 H 0.19 2.45 8.06 -2.91 -0.02 2.42 16 37 H 0.20 1.88 8.06 -2.90 -0.02 1.86 16 38 H 0.26 -0.12 7.11 -2.91 -0.02 -0.14 16 39 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.03 1.23 8.11 -2.38 -0.02 1.21 16 42 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 43 H 0.02 0.80 8.00 -2.38 -0.02 0.78 16 44 H 0.04 1.83 7.57 -2.39 -0.02 1.82 16 Total: -1.00 -78.78 380.10 2.95 -75.83 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.31 Total: 11.70 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 9.83 Total: 20.82 kcal Atomic # 7 Polarization: -131.14 SS G_CDS: -9.16 Total: -140.30 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.06 Total: -16.01 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -78.78 2.95 -75.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970581234.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.531 kcal (2) G-P(sol) polarization free energy of solvation -78.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds