Wall clock time and date at job start Wed Apr 1 2020 00:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 110.00292 * 2 1 4 4 C 1.54330 * 109.88055 * 121.09683 * 2 1 3 5 5 H 1.08998 * 110.71872 * 259.96876 * 4 2 1 6 6 N 1.46497 * 110.72190 * 23.24564 * 4 2 1 7 7 C 1.36932 * 120.00030 * 204.99663 * 6 4 2 8 8 H 1.07994 * 120.00169 * 0.02562 * 7 6 4 9 9 C 1.38816 * 119.99953 * 179.97438 * 7 6 4 10 10 N 1.31613 * 119.99968 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99797 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47252 * 90.00061 * 11 9 7 13 13 H 1.48502 * 109.46982 * 209.99573 * 11 9 7 14 14 H 1.48494 * 109.47030 * 329.99333 * 11 9 7 15 15 C 1.55167 * 102.93900 * 141.60743 * 4 2 1 16 16 C 1.55125 * 101.48720 * 324.33076 * 15 4 2 17 17 N 1.47025 * 109.88284 * 238.90051 * 2 1 3 18 18 C 1.34778 * 125.64225 * 61.60942 * 17 2 1 19 19 O 1.21513 * 120.00412 * 359.97438 * 18 17 2 20 20 C 1.48173 * 119.99766 * 180.02562 * 18 17 2 21 21 C 1.39233 * 119.68439 * 179.97438 * 20 18 17 22 22 C 1.38707 * 119.18522 * 179.97438 * 21 20 18 23 23 C 1.38414 * 118.55767 * 359.97438 * 22 21 20 24 24 C 1.39258 * 119.29982 * 0.02562 * 23 22 21 25 25 N 1.39843 * 119.62121 * 179.97438 * 24 23 22 26 26 C 1.34810 * 126.84905 * 180.02562 * 25 24 23 27 27 N 1.30811 * 108.01652 * 179.72142 * 26 25 24 28 28 C 1.33291 * 109.85240 * 0.40618 * 27 26 25 29 29 N 1.30710 * 109.01257 * 359.58521 * 28 27 26 30 30 N 1.31979 * 120.75897 * 0.27395 * 24 23 22 31 31 H 1.08996 * 109.47017 * 179.64457 * 1 2 3 32 32 H 1.09003 * 109.46535 * 299.64135 * 1 2 3 33 33 H 1.09000 * 109.47081 * 59.63967 * 1 2 3 34 34 H 0.97003 * 120.00020 * 25.00090 * 6 4 2 35 35 H 0.97001 * 120.00370 * 180.02562 * 10 9 7 36 36 H 1.09001 * 110.99917 * 82.57369 * 15 4 2 37 37 H 1.09002 * 110.99799 * 206.38101 * 15 4 2 38 38 H 1.09002 * 110.49621 * 278.45697 * 16 15 4 39 39 H 1.08998 * 110.34247 * 156.05748 * 16 15 4 40 40 H 1.08000 * 120.40872 * 0.02562 * 21 20 18 41 41 H 1.08001 * 120.72338 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.35407 * 180.02562 * 23 22 21 43 43 H 1.08000 * 125.98848 * 359.96775 * 26 25 24 44 44 H 1.08002 * 125.49756 * 179.85878 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 1.2428 5 1 2.3529 -0.0461 2.0201 6 7 1.0471 -1.6855 1.7475 7 6 1.0606 -2.0618 3.0640 8 1 1.8139 -1.6683 3.7304 9 6 0.1055 -2.9483 3.5424 10 7 0.1182 -3.3096 4.8079 11 14 -1.1978 -3.6284 2.3898 12 1 -0.7035 -4.8836 1.7692 13 1 -2.4380 -3.9104 3.1565 14 1 -1.4882 -2.6319 1.3279 15 6 3.2876 -1.5144 0.6923 16 6 2.8098 -1.8826 -0.7369 17 7 2.0300 -0.7142 -1.1839 18 6 1.8074 -0.3621 -2.4657 19 8 1.1416 0.6225 -2.7185 20 6 2.3735 -1.1762 -3.5666 21 6 2.1390 -0.8068 -4.8884 22 6 2.6744 -1.5761 -5.9109 23 6 3.4270 -2.6889 -5.5772 24 6 3.6227 -3.0016 -4.2344 25 7 4.3814 -4.1246 -3.8897 26 6 4.6613 -4.5602 -2.6450 27 7 5.3901 -5.6414 -2.7491 28 6 5.6032 -5.9217 -4.0347 29 7 5.0031 -5.0240 -4.7713 30 7 3.0955 -2.2536 -3.2834 31 1 -0.3633 -1.0276 -0.0064 32 1 -0.3632 0.5083 0.8932 33 1 -0.3633 0.5194 -0.8867 34 1 0.3704 -2.0388 1.1490 35 1 -0.5490 -3.9293 5.1421 36 1 4.1654 -0.8690 0.6604 37 1 3.4855 -2.4108 1.2800 38 1 2.1800 -2.7719 -0.7114 39 1 3.6654 -2.0413 -1.3932 40 1 1.5482 0.0684 -5.1148 41 1 2.5085 -1.3122 -6.9449 42 1 3.8578 -3.3081 -6.3501 43 1 4.3369 -4.0996 -1.7235 44 1 6.1754 -6.7583 -4.4077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987277314.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:34 Heat of formation + Delta-G solvation = 148.205615 kcal Electronic energy + Delta-G solvation = -30043.094317 eV Core-core repulsion = 25999.475491 eV Total energy + Delta-G solvation = -4043.618827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.70493 -41.06090 -39.64986 -37.68266 -34.65636 -34.31390 -33.27968 -31.78264 -31.50708 -31.00136 -30.43646 -29.36060 -25.68449 -25.28777 -24.93665 -23.29494 -22.82310 -22.08561 -21.88525 -20.29444 -19.19627 -18.55756 -17.96826 -17.42938 -16.62326 -16.48442 -16.27371 -15.92056 -15.61069 -15.21872 -14.81904 -14.48310 -14.39711 -14.07975 -13.94931 -13.60446 -13.40190 -13.14702 -12.75391 -12.65223 -12.57619 -12.47374 -11.95631 -11.60362 -11.36053 -11.24695 -11.12442 -10.93187 -10.74786 -10.63603 -10.50286 -10.45091 -10.27031 -10.25550 -10.06377 -9.70454 -9.59771 -9.13647 -9.00115 -8.50803 -7.36217 -5.84052 -3.20484 0.02323 0.35912 1.44172 1.49192 2.50276 2.61135 2.84524 3.31816 3.34778 3.41209 3.44840 3.61406 3.94260 3.98456 4.31318 4.44234 4.47225 4.52386 4.70108 4.87064 4.94543 4.97396 5.09298 5.18855 5.36440 5.50633 5.53564 5.57915 5.58849 5.67512 5.70862 5.79344 5.83817 5.97355 6.03729 6.15417 6.26916 6.35561 6.45509 6.46295 6.59597 6.65562 6.74977 6.98911 7.55069 7.64505 7.91437 8.05844 8.34844 9.12141 9.84539 10.03208 11.33913 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.010704 B = 0.003871 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.286807 B = 7230.632658 C = 8817.317201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.122 3.878 3 H 0.080 0.920 4 C 0.178 3.822 5 H 0.080 0.920 6 N -0.738 5.738 7 C -0.247 4.247 8 H 0.093 0.907 9 C 0.011 3.989 10 N -0.930 5.930 11 Si 0.877 3.123 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.277 1.277 15 C -0.164 4.164 16 C 0.103 3.897 17 N -0.585 5.585 18 C 0.579 3.421 19 O -0.533 6.533 20 C 0.125 3.875 21 C -0.118 4.118 22 C -0.057 4.057 23 C -0.138 4.138 24 C 0.359 3.641 25 N -0.335 5.335 26 C 0.295 3.705 27 N -0.536 5.536 28 C 0.216 3.784 29 N -0.313 5.313 30 N -0.470 5.470 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.364 0.636 35 H 0.260 0.740 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.229 0.771 44 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.329 1.938 -22.800 24.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.018 3.982 3 H 0.098 0.902 4 C 0.067 3.933 5 H 0.098 0.902 6 N -0.381 5.381 7 C -0.377 4.377 8 H 0.111 0.889 9 C -0.185 4.185 10 N -0.577 5.577 11 Si 0.707 3.293 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.203 1.203 15 C -0.205 4.205 16 C -0.019 4.019 17 N -0.316 5.316 18 C 0.365 3.635 19 O -0.410 6.410 20 C -0.015 4.015 21 C -0.139 4.139 22 C -0.083 4.083 23 C -0.161 4.161 24 C 0.129 3.871 25 N -0.121 5.121 26 C 0.000 4.000 27 N -0.261 5.261 28 C -0.087 4.087 29 N -0.139 5.139 30 N -0.186 5.186 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.200 0.800 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.176 0.824 41 H 0.172 0.828 42 H 0.171 0.829 43 H 0.245 0.755 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 9.235 2.038 -22.333 24.253 hybrid contribution -1.174 -0.524 -1.397 1.899 sum 8.061 1.513 -23.730 25.107 Atomic orbital electron populations 1.21996 0.94381 1.02463 1.02328 1.22165 0.95323 0.96185 0.84485 0.90227 1.21163 0.88697 0.91408 0.92055 0.90167 1.42877 1.33180 1.52988 1.09061 1.19056 1.12335 1.21734 0.84576 0.88924 1.24623 0.98662 0.99584 0.95628 1.69682 1.37384 1.37648 1.12960 0.86699 0.82618 0.79271 0.80718 1.21066 1.21612 1.20283 1.23632 0.99094 1.02718 0.95068 1.22726 0.95607 0.87700 0.95861 1.48515 1.50454 1.28233 1.04393 1.17314 0.80906 0.84080 0.81180 1.90788 1.40234 1.26917 1.83051 1.20985 0.95255 0.91332 0.93915 1.22209 0.99075 1.01129 0.91533 1.21593 0.93593 0.92448 1.00708 1.21865 1.00122 0.98870 0.95241 1.17671 0.92977 0.86580 0.89875 1.47530 1.38521 1.19898 1.06113 1.26596 0.91932 0.90729 0.90787 1.70776 1.19983 1.15062 1.20269 1.26308 0.97079 0.98116 0.87173 1.78130 1.16168 1.03928 1.15654 1.67079 1.10160 1.05786 1.35593 0.92391 0.90885 0.92268 0.80035 0.92947 0.91605 0.88911 0.91444 0.89183 0.82391 0.82790 0.82909 0.75515 0.75696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 8.51 37.16 0.32 -2.31 16 2 C 0.12 1.93 3.43 -66.95 -0.23 1.71 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.18 3.10 3.48 -66.09 -0.23 2.87 16 5 H 0.08 1.40 8.09 -51.93 -0.42 0.98 16 6 N -0.74 -16.00 4.35 -51.65 -0.22 -16.23 16 7 C -0.25 -6.51 10.44 -15.06 -0.16 -6.66 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 9 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 10 N -0.93 -28.24 13.97 55.49 0.78 -27.47 16 11 Si 0.88 21.54 27.74 -169.99 -4.71 16.83 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.28 -6.44 6.41 56.52 0.36 -6.08 16 15 C -0.16 -2.42 6.78 -24.46 -0.17 -2.59 16 16 C 0.10 1.43 5.88 -2.41 -0.01 1.42 16 17 N -0.58 -8.74 3.06 -163.86 -0.50 -9.24 16 18 C 0.58 8.56 7.63 -12.18 -0.09 8.46 16 19 O -0.53 -8.89 15.35 5.35 0.08 -8.80 16 20 C 0.12 1.51 6.72 -83.02 -0.56 0.95 16 21 C -0.12 -1.10 9.63 -39.04 -0.38 -1.47 16 22 C -0.06 -0.40 10.16 -39.34 -0.40 -0.80 16 23 C -0.14 -1.18 9.72 -39.14 -0.38 -1.56 16 24 C 0.36 3.90 7.56 -154.50 -1.17 2.73 16 25 N -0.33 -3.77 3.81 -13.33 -0.05 -3.82 16 26 C 0.30 3.32 12.26 -90.33 -1.11 2.21 16 27 N -0.54 -6.26 11.19 -15.73 -0.18 -6.44 16 28 C 0.22 2.07 13.03 -91.77 -1.20 0.87 16 29 N -0.31 -3.37 12.01 29.30 0.35 -3.01 16 30 N -0.47 -5.53 6.12 -8.84 -0.05 -5.58 16 31 H 0.06 1.09 6.09 -51.93 -0.32 0.77 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 0.99 6.88 -51.93 -0.36 0.64 16 34 H 0.36 8.05 3.53 -40.82 -0.14 7.90 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 1.10 5.09 -51.93 -0.26 0.84 16 40 H 0.16 1.33 7.63 -52.49 -0.40 0.93 16 41 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.15 1.12 7.72 -52.49 -0.41 0.72 16 43 H 0.23 2.19 7.23 -52.49 -0.38 1.81 16 44 H 0.23 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 364.41 15.07 5.49 5.49 Total: -1.00 -33.07 364.41 -10.12 -43.19 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -5.24 Total: 9.04 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: -5.85 Total: 6.05 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: 0.12 Total: -71.79 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.08 Total: -8.80 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.83 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.07 -10.12 -43.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987277314.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.391 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds