Wall clock time and date at job start Wed Apr 1 2020 00:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 110.00292 * 2 1 4 4 C 1.54330 * 109.88055 * 121.09683 * 2 1 3 5 5 H 1.08998 * 110.71872 * 259.96876 * 4 2 1 6 6 N 1.46497 * 110.72190 * 23.24564 * 4 2 1 7 7 C 1.36932 * 120.00030 * 204.99663 * 6 4 2 8 8 H 1.07994 * 120.00169 * 0.02562 * 7 6 4 9 9 C 1.38816 * 119.99953 * 179.97438 * 7 6 4 10 10 N 1.31613 * 119.99968 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99797 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47252 * 90.00061 * 11 9 7 13 13 H 1.48502 * 109.46982 * 209.99573 * 11 9 7 14 14 H 1.48494 * 109.47030 * 329.99333 * 11 9 7 15 15 C 1.55167 * 102.93900 * 141.60743 * 4 2 1 16 16 C 1.55125 * 101.48720 * 324.33076 * 15 4 2 17 17 N 1.47025 * 109.88284 * 238.90051 * 2 1 3 18 18 C 1.34778 * 125.64225 * 61.60942 * 17 2 1 19 19 O 1.21513 * 120.00412 * 359.97438 * 18 17 2 20 20 C 1.48173 * 119.99766 * 180.02562 * 18 17 2 21 21 C 1.39233 * 119.68439 * 179.97438 * 20 18 17 22 22 C 1.38707 * 119.18522 * 179.97438 * 21 20 18 23 23 C 1.38414 * 118.55767 * 359.97438 * 22 21 20 24 24 C 1.39258 * 119.29982 * 0.02562 * 23 22 21 25 25 N 1.39843 * 119.62121 * 179.97438 * 24 23 22 26 26 C 1.34810 * 126.84905 * 180.02562 * 25 24 23 27 27 N 1.30811 * 108.01652 * 179.72142 * 26 25 24 28 28 C 1.33291 * 109.85240 * 0.40618 * 27 26 25 29 29 N 1.30710 * 109.01257 * 359.58521 * 28 27 26 30 30 N 1.31979 * 120.75897 * 0.27395 * 24 23 22 31 31 H 1.08996 * 109.47017 * 179.64457 * 1 2 3 32 32 H 1.09003 * 109.46535 * 299.64135 * 1 2 3 33 33 H 1.09000 * 109.47081 * 59.63967 * 1 2 3 34 34 H 0.97003 * 120.00020 * 25.00090 * 6 4 2 35 35 H 0.97001 * 120.00370 * 180.02562 * 10 9 7 36 36 H 1.09001 * 110.99917 * 82.57369 * 15 4 2 37 37 H 1.09002 * 110.99799 * 206.38101 * 15 4 2 38 38 H 1.09002 * 110.49621 * 278.45697 * 16 15 4 39 39 H 1.08998 * 110.34247 * 156.05748 * 16 15 4 40 40 H 1.08000 * 120.40872 * 0.02562 * 21 20 18 41 41 H 1.08001 * 120.72338 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.35407 * 180.02562 * 23 22 21 43 43 H 1.08000 * 125.98848 * 359.96775 * 26 25 24 44 44 H 1.08002 * 125.49756 * 179.85878 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 1.2428 5 1 2.3529 -0.0461 2.0201 6 7 1.0471 -1.6855 1.7475 7 6 1.0606 -2.0618 3.0640 8 1 1.8139 -1.6683 3.7304 9 6 0.1055 -2.9483 3.5424 10 7 0.1182 -3.3096 4.8079 11 14 -1.1978 -3.6284 2.3898 12 1 -0.7035 -4.8836 1.7692 13 1 -2.4380 -3.9104 3.1565 14 1 -1.4882 -2.6319 1.3279 15 6 3.2876 -1.5144 0.6923 16 6 2.8098 -1.8826 -0.7369 17 7 2.0300 -0.7142 -1.1839 18 6 1.8074 -0.3621 -2.4657 19 8 1.1416 0.6225 -2.7185 20 6 2.3735 -1.1762 -3.5666 21 6 2.1390 -0.8068 -4.8884 22 6 2.6744 -1.5761 -5.9109 23 6 3.4270 -2.6889 -5.5772 24 6 3.6227 -3.0016 -4.2344 25 7 4.3814 -4.1246 -3.8897 26 6 4.6613 -4.5602 -2.6450 27 7 5.3901 -5.6414 -2.7491 28 6 5.6032 -5.9217 -4.0347 29 7 5.0031 -5.0240 -4.7713 30 7 3.0955 -2.2536 -3.2834 31 1 -0.3633 -1.0276 -0.0064 32 1 -0.3632 0.5083 0.8932 33 1 -0.3633 0.5194 -0.8867 34 1 0.3704 -2.0388 1.1490 35 1 -0.5490 -3.9293 5.1421 36 1 4.1654 -0.8690 0.6604 37 1 3.4855 -2.4108 1.2800 38 1 2.1800 -2.7719 -0.7114 39 1 3.6654 -2.0413 -1.3932 40 1 1.5482 0.0684 -5.1148 41 1 2.5085 -1.3122 -6.9449 42 1 3.8578 -3.3081 -6.3501 43 1 4.3369 -4.0996 -1.7235 44 1 6.1754 -6.7583 -4.4077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987277314.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:33 Heat of formation + Delta-G solvation = 130.156420 kcal Electronic energy + Delta-G solvation = -30043.876989 eV Core-core repulsion = 25999.475491 eV Total energy + Delta-G solvation = -4044.401498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.47522 -41.98287 -40.72301 -38.95023 -35.92552 -35.43070 -34.26535 -33.34305 -32.44029 -32.27871 -31.36894 -30.80320 -26.97799 -26.30267 -25.73430 -25.08444 -23.85113 -22.89044 -22.79482 -21.44630 -20.47283 -19.84907 -19.40046 -18.54811 -17.68282 -17.24911 -17.20226 -16.77393 -16.55989 -16.47255 -16.17738 -15.93538 -15.36875 -15.20245 -15.01588 -14.83204 -14.51305 -14.36981 -14.30053 -14.00173 -13.45254 -13.39050 -13.27438 -13.22955 -12.96902 -12.55971 -12.44301 -12.36565 -12.13958 -11.97781 -11.85453 -11.66510 -11.41932 -11.26387 -11.17781 -11.04532 -11.00222 -10.62061 -9.95760 -9.66765 -9.30158 -8.00853 -5.32777 -0.73311 -0.38596 0.70144 0.73895 1.35293 1.35602 1.42806 1.57558 1.76434 1.80033 2.46736 2.60482 2.74606 3.22851 3.25831 3.30721 3.49075 3.55189 3.69484 3.76698 3.81577 3.89128 4.03376 4.14773 4.17378 4.28854 4.31224 4.38101 4.52498 4.73122 4.75414 4.80880 4.91865 4.96069 4.99616 5.03575 5.16931 5.19896 5.25230 5.30368 5.34435 5.37431 5.69894 5.81811 6.18174 6.23229 6.41017 6.85786 6.94695 7.08815 7.84446 8.02151 9.20606 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.010704 B = 0.003871 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.286807 B = 7230.632658 C = 8817.317201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.128 3.872 3 H 0.094 0.906 4 C 0.168 3.832 5 H 0.080 0.920 6 N -0.740 5.740 7 C -0.219 4.219 8 H 0.068 0.932 9 C -0.054 4.054 10 N -0.980 5.980 11 Si 0.936 3.064 12 H -0.282 1.282 13 H -0.298 1.298 14 H -0.259 1.259 15 C -0.153 4.153 16 C 0.114 3.886 17 N -0.589 5.589 18 C 0.578 3.422 19 O -0.556 6.556 20 C 0.100 3.900 21 C -0.111 4.111 22 C -0.036 4.036 23 C -0.130 4.130 24 C 0.340 3.660 25 N -0.340 5.340 26 C 0.286 3.714 27 N -0.559 5.559 28 C 0.217 3.783 29 N -0.324 5.324 30 N -0.483 5.483 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.364 0.636 35 H 0.256 0.744 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.110 0.890 40 H 0.168 0.832 41 H 0.199 0.801 42 H 0.168 0.832 43 H 0.235 0.765 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.112 2.195 -26.556 28.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.024 3.976 3 H 0.112 0.888 4 C 0.059 3.941 5 H 0.098 0.902 6 N -0.383 5.383 7 C -0.350 4.350 8 H 0.086 0.914 9 C -0.245 4.245 10 N -0.631 5.631 11 Si 0.765 3.235 12 H -0.209 1.209 13 H -0.225 1.225 14 H -0.184 1.184 15 C -0.193 4.193 16 C -0.008 4.008 17 N -0.320 5.320 18 C 0.366 3.634 19 O -0.435 6.435 20 C -0.039 4.039 21 C -0.133 4.133 22 C -0.062 4.062 23 C -0.152 4.152 24 C 0.110 3.890 25 N -0.125 5.125 26 C -0.010 4.010 27 N -0.285 5.285 28 C -0.085 4.085 29 N -0.150 5.150 30 N -0.199 5.199 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.200 0.800 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.128 0.872 40 H 0.185 0.815 41 H 0.216 0.784 42 H 0.185 0.815 43 H 0.251 0.749 44 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 10.048 2.333 -26.152 28.113 hybrid contribution -1.306 -0.538 -0.320 1.448 sum 8.742 1.795 -26.472 27.936 Atomic orbital electron populations 1.21903 0.95253 1.01094 1.02190 1.21989 0.94542 0.96704 0.84321 0.88835 1.21382 0.88801 0.91097 0.92866 0.90232 1.42844 1.34390 1.53751 1.07354 1.19038 1.10316 1.19633 0.85985 0.91384 1.25259 1.01323 1.01061 0.96896 1.69837 1.38768 1.39440 1.15064 0.85720 0.79728 0.78927 0.79148 1.20891 1.22530 1.18362 1.23496 0.98630 1.02084 0.95134 1.22656 0.95858 0.86826 0.95498 1.48535 1.50736 1.28336 1.04429 1.17722 0.80293 0.83966 0.81413 1.90764 1.41291 1.28033 1.83445 1.20686 0.97165 0.92036 0.94003 1.22414 0.98577 1.01451 0.90814 1.22032 0.91374 0.90687 1.02116 1.22152 0.99439 0.99154 0.94453 1.17909 0.93592 0.86726 0.90729 1.47612 1.38632 1.20130 1.06128 1.26767 0.92072 0.90935 0.91262 1.70790 1.20647 1.15543 1.21534 1.27063 0.96545 0.98536 0.86370 1.78090 1.16660 1.04229 1.15971 1.66834 1.10581 1.05974 1.36514 0.94211 0.91328 0.92063 0.80042 0.93484 0.89045 0.90324 0.92842 0.87220 0.81486 0.78436 0.81459 0.74942 0.72188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.89 8.51 71.98 0.61 -4.28 16 2 C 0.13 3.94 3.43 45.34 0.16 4.09 16 3 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 4 C 0.17 5.74 3.48 46.19 0.16 5.90 16 5 H 0.08 2.74 8.09 -2.39 -0.02 2.72 16 6 N -0.74 -32.01 4.35 -317.31 -1.38 -33.39 16 7 C -0.22 -11.69 10.44 84.04 0.88 -10.81 16 8 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 9 C -0.05 -3.06 5.50 84.86 0.47 -2.60 16 10 N -0.98 -61.39 13.97 21.65 0.30 -61.09 16 11 Si 0.94 45.18 27.74 68.60 1.90 47.08 16 12 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 13 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 14 H -0.26 -11.53 6.41 99.48 0.64 -10.89 16 15 C -0.15 -4.36 6.78 32.07 0.22 -4.14 16 16 C 0.11 3.03 5.88 86.93 0.51 3.54 16 17 N -0.59 -16.89 3.06 -790.63 -2.42 -19.31 16 18 C 0.58 16.30 7.63 86.88 0.66 16.96 16 19 O -0.56 -17.85 15.35 -3.76 -0.06 -17.91 16 20 C 0.10 2.22 6.72 41.89 0.28 2.51 16 21 C -0.11 -1.73 9.63 22.62 0.22 -1.51 16 22 C -0.04 -0.35 10.16 22.42 0.23 -0.13 16 23 C -0.13 -1.77 9.72 22.56 0.22 -1.55 16 24 C 0.34 6.69 7.56 132.93 1.01 7.70 16 25 N -0.34 -7.11 3.81 -196.08 -0.75 -7.86 16 26 C 0.29 6.16 12.26 180.25 2.21 8.37 16 27 N -0.56 -12.46 11.19 -203.70 -2.28 -14.74 16 28 C 0.22 3.74 13.03 180.75 2.35 6.10 16 29 N -0.32 -6.32 12.01 -61.22 -0.74 -7.05 16 30 N -0.48 -10.55 6.12 -181.89 -1.11 -11.66 16 31 H 0.04 1.46 6.09 -2.39 -0.01 1.44 16 32 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.06 2.01 6.88 -2.39 -0.02 1.99 16 34 H 0.36 15.90 3.53 -92.71 -0.33 15.57 16 35 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.11 2.53 5.09 -2.39 -0.01 2.52 16 40 H 0.17 2.30 7.63 -2.91 -0.02 2.28 16 41 H 0.20 0.20 8.06 -2.91 -0.02 0.18 16 42 H 0.17 1.82 7.72 -2.91 -0.02 1.80 16 43 H 0.23 4.40 7.23 -2.91 -0.02 4.38 16 44 H 0.26 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -73.14 364.41 4.31 -68.84 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.66 Total: 26.95 kcal Atomic # 6 Polarization: 19.96 SS G_CDS: 10.18 Total: 30.14 kcal Atomic # 7 Polarization: -146.73 SS G_CDS: -8.37 Total: -155.11 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.06 Total: -17.91 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.90 Total: 47.08 kcal Total: -73.14 4.31 -68.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987277314.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.992 kcal (2) G-P(sol) polarization free energy of solvation -73.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds