Wall clock time and date at job start Wed Apr 1 2020 00:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.87410 * 2 1 4 4 C 1.54323 * 109.88069 * 238.82592 * 2 1 3 5 5 C 1.55147 * 102.94371 * 262.77552 * 4 2 1 6 6 H 1.09006 * 111.04125 * 82.58481 * 5 4 2 7 7 N 1.46500 * 111.00584 * 206.42459 * 5 4 2 8 8 C 1.36941 * 120.00033 * 198.64836 * 7 5 4 9 9 H 1.08002 * 119.99568 * 0.02562 * 8 7 5 10 10 C 1.38805 * 120.00035 * 179.97438 * 8 7 5 11 11 N 1.31622 * 119.99992 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00323 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47632 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47066 * 300.00184 * 12 10 8 15 15 H 1.48497 * 109.46943 * 59.99636 * 12 10 8 16 16 C 1.54913 * 101.58264 * 324.49772 * 5 4 2 17 17 N 1.47020 * 109.88442 * 121.01940 * 2 1 3 18 18 C 1.34777 * 125.64407 * 300.44330 * 17 2 1 19 19 O 1.21551 * 119.99865 * 176.44829 * 18 17 2 20 20 C 1.47854 * 120.00587 * 356.43981 * 18 17 2 21 21 C 1.39583 * 120.52469 * 353.08794 * 20 18 17 22 22 N 1.31672 * 120.70983 * 179.67403 * 21 20 18 23 23 C 1.31885 * 121.94927 * 0.63929 * 22 21 20 24 24 C 1.38897 * 120.99095 * 359.64571 * 23 22 21 25 25 N 1.40283 * 120.41563 * 180.02562 * 24 23 22 26 26 C 1.36113 * 125.94548 * 359.97438 * 25 24 23 27 27 C 1.35370 * 106.05411 * 179.97438 * 26 25 24 28 28 N 1.33769 * 106.53710 * 0.02562 * 27 26 25 29 29 N 1.28604 * 109.05802 * 359.73202 * 28 27 26 30 30 C 1.38986 * 119.17262 * 0.03193 * 24 23 22 31 31 H 1.08999 * 109.47327 * 279.61653 * 1 2 3 32 32 H 1.09005 * 109.47256 * 39.61017 * 1 2 3 33 33 H 1.09000 * 109.47355 * 159.61679 * 1 2 3 34 34 H 1.08999 * 110.71906 * 144.40735 * 4 2 1 35 35 H 1.09003 * 110.72184 * 21.14147 * 4 2 1 36 36 H 0.97001 * 119.99903 * 18.65041 * 7 5 4 37 37 H 0.97001 * 119.99882 * 0.02562 * 11 10 8 38 38 H 1.08999 * 110.36630 * 155.84120 * 16 5 4 39 39 H 1.09001 * 110.36867 * 278.06093 * 16 5 4 40 40 H 1.08011 * 119.64714 * 359.97126 * 21 20 18 41 41 H 1.07998 * 119.50804 * 179.67324 * 23 22 21 42 42 H 1.08006 * 126.96663 * 359.96790 * 26 25 24 43 43 H 1.08001 * 126.72776 * 180.02562 * 27 26 25 44 44 H 1.07996 * 120.88403 * 180.02562 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7512 -1.2417 5 6 2.3518 -2.1704 -0.6895 6 1 1.4454 -2.7751 -0.6566 7 7 3.3936 -2.8332 -1.4779 8 6 3.5387 -4.1934 -1.4148 9 1 2.8849 -4.7775 -0.7841 10 6 4.5255 -4.8215 -2.1621 11 7 5.3220 -4.1096 -2.9311 12 14 4.7231 -6.6771 -2.0767 13 1 5.8395 -7.0973 -2.9609 14 1 5.0213 -7.0793 -0.6786 15 1 3.4657 -7.3298 -2.5219 16 6 2.8568 -1.8488 0.7393 17 7 2.0300 -0.7125 1.1848 18 6 1.7753 -0.3811 2.4662 19 8 2.1897 -1.0816 3.3689 20 6 0.9920 0.8345 2.7738 21 6 0.6337 1.7229 1.7585 22 7 -0.0693 2.8033 2.0274 23 6 -0.4521 3.0994 3.2543 24 6 -0.1324 2.2714 4.3227 25 7 -0.5464 2.5977 5.6227 26 6 -1.2668 3.6960 5.9799 27 6 -1.4403 3.6104 7.3197 28 7 -0.8297 2.4866 7.7117 29 7 -0.3155 1.9079 6.6848 30 6 0.6029 1.1156 4.0877 31 1 -0.3634 0.1717 1.0132 32 1 -0.3634 0.7917 -0.6552 33 1 -0.3634 -0.9633 -0.3579 34 1 2.9655 -0.2853 -1.6179 35 1 1.2917 -0.7917 -2.0190 36 1 3.9806 -2.3086 -2.0445 37 1 5.2196 -3.1461 -2.9752 38 1 2.7087 -2.7061 1.3959 39 1 3.9097 -1.5676 0.7152 40 1 0.9323 1.5195 0.7406 41 1 -1.0233 3.9988 3.4308 42 1 -1.6267 4.4772 5.3267 43 1 -1.9682 4.3119 7.9486 44 1 0.8665 0.4520 4.8979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989225856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:06 Heat of formation + Delta-G solvation = 171.863277 kcal Electronic energy + Delta-G solvation = -29077.816411 eV Core-core repulsion = 25035.223457 eV Total energy + Delta-G solvation = -4042.592953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.92276 -41.56901 -39.74544 -37.86277 -35.78109 -34.84538 -33.19791 -32.06608 -31.74236 -31.57083 -30.49205 -28.36331 -26.34785 -25.21378 -25.08511 -23.82799 -23.07535 -22.36082 -21.97418 -20.52804 -20.15087 -18.83216 -17.96025 -17.55604 -17.31408 -17.02975 -16.36518 -15.81514 -15.62413 -15.44699 -15.14581 -14.76185 -14.47936 -14.28270 -14.08431 -13.77980 -13.71681 -13.46421 -13.14384 -12.65427 -12.46078 -12.33866 -12.22649 -12.20573 -11.78417 -11.57779 -11.31777 -11.16535 -10.79682 -10.73203 -10.59498 -10.41546 -10.33476 -10.05210 -9.97007 -9.94017 -9.33917 -9.28998 -9.11936 -8.67618 -7.24556 -6.23466 -3.26872 -0.23490 0.22870 1.36624 1.61443 2.07957 2.51651 2.74540 3.25670 3.47532 3.50283 3.59089 3.67126 3.67763 3.87667 4.04390 4.18060 4.26248 4.39030 4.48165 4.55884 4.58196 4.66710 4.68065 4.84448 4.94346 5.12928 5.24894 5.28778 5.35383 5.40416 5.54821 5.57307 5.61346 5.63909 5.66848 5.84158 5.85785 6.00868 6.13795 6.14697 6.24506 6.38811 6.65387 7.07323 7.40891 7.68372 7.94918 7.97179 8.62048 9.04026 9.90787 10.02370 11.24083 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.025090 B = 0.002214 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.726005 B =12642.831758 C =13485.673389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.113 3.887 3 H 0.087 0.913 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.068 0.932 7 N -0.722 5.722 8 C -0.341 4.341 9 H 0.068 0.932 10 C -0.038 4.038 11 N -0.938 5.938 12 Si 1.079 2.921 13 H -0.284 1.284 14 H -0.293 1.293 15 H -0.294 1.294 16 C 0.082 3.918 17 N -0.599 5.599 18 C 0.572 3.428 19 O -0.527 6.527 20 C -0.161 4.161 21 C 0.110 3.890 22 N -0.462 5.462 23 C 0.129 3.871 24 C 0.055 3.945 25 N -0.239 5.239 26 C -0.050 4.050 27 C -0.041 4.041 28 N -0.259 5.259 29 N -0.074 5.074 30 C 0.000 4.000 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.371 0.629 37 H 0.255 0.745 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.210 0.790 41 H 0.170 0.830 42 H 0.197 0.803 43 H 0.198 0.802 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.601 20.447 10.211 27.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.010 3.990 3 H 0.104 0.896 4 C -0.174 4.174 5 C 0.067 3.933 6 H 0.085 0.915 7 N -0.363 5.363 8 C -0.472 4.472 9 H 0.086 0.914 10 C -0.237 4.237 11 N -0.582 5.582 12 Si 0.910 3.090 13 H -0.210 1.210 14 H -0.221 1.221 15 H -0.221 1.221 16 C -0.043 4.043 17 N -0.332 5.332 18 C 0.359 3.641 19 O -0.404 6.404 20 C -0.167 4.167 21 C -0.047 4.047 22 N -0.170 5.170 23 C -0.031 4.031 24 C -0.038 4.038 25 N -0.027 5.027 26 C -0.197 4.197 27 C -0.197 4.197 28 N -0.126 5.126 29 N -0.052 5.052 30 C -0.027 4.027 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.205 0.795 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.225 0.775 41 H 0.187 0.813 42 H 0.214 0.786 43 H 0.215 0.785 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -14.191 17.908 10.247 25.042 hybrid contribution -1.082 2.059 0.828 2.469 sum -15.273 19.967 11.075 27.470 Atomic orbital electron populations 1.22767 0.94445 1.04238 1.02597 1.22037 0.94438 0.96041 0.86530 0.89554 1.23017 1.02082 0.97037 0.95264 1.21227 0.92847 0.90783 0.88456 0.91457 1.42303 1.37388 1.05146 1.51463 1.20037 1.17386 0.83174 1.26595 0.91449 1.25822 0.94601 1.06913 0.96327 1.70914 1.39858 1.07077 1.40377 0.83252 0.75988 0.73926 0.75878 1.20954 1.22053 1.22100 1.23524 0.94500 0.87134 0.99100 1.48492 1.49953 1.30982 1.03790 1.17438 0.80329 0.84247 0.82057 1.90831 1.52572 1.52241 1.44734 1.21028 1.03067 0.98681 0.93936 1.25293 0.89715 0.87264 1.02408 1.68043 1.11410 1.18033 1.19535 1.22906 0.95834 0.97840 0.86521 1.18599 1.04440 0.99076 0.81729 1.44633 1.35120 1.16328 1.06630 1.23895 1.02818 0.94697 0.98331 1.23720 1.04349 0.98465 0.93141 1.75178 1.10386 1.07129 1.19877 1.78501 1.19977 1.18922 0.87830 1.21560 0.90069 0.93445 0.97668 0.91914 0.90287 0.90628 0.90131 0.89471 0.79516 0.93342 0.90493 0.91029 0.77476 0.81277 0.78581 0.78542 0.81563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 7.64 37.16 0.28 -1.34 16 2 C 0.11 1.21 2.73 -66.96 -0.18 1.02 16 3 H 0.09 0.73 6.07 -51.93 -0.31 0.42 16 4 C -0.14 -1.72 6.02 -24.90 -0.15 -1.87 16 5 C 0.18 3.15 3.69 -65.78 -0.24 2.91 16 6 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 7 N -0.72 -16.42 5.27 -51.35 -0.27 -16.69 16 8 C -0.34 -9.04 9.98 -15.06 -0.15 -9.19 16 9 H 0.07 1.78 7.83 -52.49 -0.41 1.36 16 10 C -0.04 -1.07 5.50 -17.43 -0.10 -1.16 16 11 N -0.94 -27.69 13.70 55.49 0.76 -26.93 16 12 Si 1.08 25.11 29.92 -169.99 -5.09 20.02 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 16 C 0.08 1.43 6.62 -2.53 -0.02 1.42 16 17 N -0.60 -8.51 3.08 -164.74 -0.51 -9.02 16 18 C 0.57 8.62 7.54 -12.32 -0.09 8.53 16 19 O -0.53 -9.95 16.67 5.32 0.09 -9.86 16 20 C -0.16 -1.89 5.17 -104.84 -0.54 -2.43 16 21 C 0.11 1.03 7.74 -17.12 -0.13 0.90 16 22 N -0.46 -4.00 10.34 -12.77 -0.13 -4.14 16 23 C 0.13 0.94 10.62 -17.28 -0.18 0.76 16 24 C 0.06 0.52 6.69 -83.47 -0.56 -0.04 16 25 N -0.24 -2.33 3.56 -10.41 -0.04 -2.37 16 26 C -0.05 -0.31 10.93 -16.67 -0.18 -0.50 16 27 C -0.04 -0.31 12.05 -17.73 -0.21 -0.52 16 28 N -0.26 -3.08 12.39 30.24 0.37 -2.70 16 29 N -0.07 -0.93 12.48 60.35 0.75 -0.18 16 30 C 0.00 0.00 9.27 -38.69 -0.36 -0.35 16 31 H 0.06 0.59 4.78 -51.93 -0.25 0.34 16 32 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 33 H 0.07 0.73 7.98 -51.93 -0.41 0.32 16 34 H 0.08 1.02 8.00 -51.93 -0.42 0.60 16 35 H 0.09 0.98 7.83 -51.93 -0.41 0.58 16 36 H 0.37 8.61 6.54 -40.82 -0.27 8.34 16 37 H 0.26 7.33 6.77 -40.82 -0.28 7.05 16 38 H 0.08 1.50 8.00 -51.93 -0.42 1.09 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.21 1.70 2.21 -53.32 -0.12 1.59 16 41 H 0.17 0.58 6.77 -52.49 -0.36 0.22 16 42 H 0.20 0.29 7.12 -52.48 -0.37 -0.08 16 43 H 0.20 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.17 2.15 7.46 -52.49 -0.39 1.75 16 LS Contribution 360.71 15.07 5.44 5.44 Total: -1.00 -34.95 360.71 -6.33 -41.28 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -4.89 Total: 7.01 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -2.82 Total: -1.86 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: 0.94 Total: -62.02 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.09 Total: 20.02 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.95 -6.33 -41.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989225856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.143 kcal (2) G-P(sol) polarization free energy of solvation -34.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds