Wall clock time and date at job start Wed Apr 1 2020 00:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.87410 * 2 1 4 4 C 1.54323 * 109.88069 * 238.82592 * 2 1 3 5 5 C 1.55147 * 102.94371 * 262.77552 * 4 2 1 6 6 H 1.09006 * 111.04125 * 82.58481 * 5 4 2 7 7 N 1.46500 * 111.00584 * 206.42459 * 5 4 2 8 8 C 1.36941 * 120.00033 * 198.64836 * 7 5 4 9 9 H 1.08002 * 119.99568 * 0.02562 * 8 7 5 10 10 C 1.38805 * 120.00035 * 179.97438 * 8 7 5 11 11 N 1.31622 * 119.99992 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00323 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47632 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47066 * 300.00184 * 12 10 8 15 15 H 1.48497 * 109.46943 * 59.99636 * 12 10 8 16 16 C 1.54913 * 101.58264 * 324.49772 * 5 4 2 17 17 N 1.47020 * 109.88442 * 121.01940 * 2 1 3 18 18 C 1.34777 * 125.64407 * 300.44330 * 17 2 1 19 19 O 1.21551 * 119.99865 * 176.44829 * 18 17 2 20 20 C 1.47854 * 120.00587 * 356.43981 * 18 17 2 21 21 C 1.39583 * 120.52469 * 353.08794 * 20 18 17 22 22 N 1.31672 * 120.70983 * 179.67403 * 21 20 18 23 23 C 1.31885 * 121.94927 * 0.63929 * 22 21 20 24 24 C 1.38897 * 120.99095 * 359.64571 * 23 22 21 25 25 N 1.40283 * 120.41563 * 180.02562 * 24 23 22 26 26 C 1.36113 * 125.94548 * 359.97438 * 25 24 23 27 27 C 1.35370 * 106.05411 * 179.97438 * 26 25 24 28 28 N 1.33769 * 106.53710 * 0.02562 * 27 26 25 29 29 N 1.28604 * 109.05802 * 359.73202 * 28 27 26 30 30 C 1.38986 * 119.17262 * 0.03193 * 24 23 22 31 31 H 1.08999 * 109.47327 * 279.61653 * 1 2 3 32 32 H 1.09005 * 109.47256 * 39.61017 * 1 2 3 33 33 H 1.09000 * 109.47355 * 159.61679 * 1 2 3 34 34 H 1.08999 * 110.71906 * 144.40735 * 4 2 1 35 35 H 1.09003 * 110.72184 * 21.14147 * 4 2 1 36 36 H 0.97001 * 119.99903 * 18.65041 * 7 5 4 37 37 H 0.97001 * 119.99882 * 0.02562 * 11 10 8 38 38 H 1.08999 * 110.36630 * 155.84120 * 16 5 4 39 39 H 1.09001 * 110.36867 * 278.06093 * 16 5 4 40 40 H 1.08011 * 119.64714 * 359.97126 * 21 20 18 41 41 H 1.07998 * 119.50804 * 179.67324 * 23 22 21 42 42 H 1.08006 * 126.96663 * 359.96790 * 26 25 24 43 43 H 1.08001 * 126.72776 * 180.02562 * 27 26 25 44 44 H 1.07996 * 120.88403 * 180.02562 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7512 -1.2417 5 6 2.3518 -2.1704 -0.6895 6 1 1.4454 -2.7751 -0.6566 7 7 3.3936 -2.8332 -1.4779 8 6 3.5387 -4.1934 -1.4148 9 1 2.8849 -4.7775 -0.7841 10 6 4.5255 -4.8215 -2.1621 11 7 5.3220 -4.1096 -2.9311 12 14 4.7231 -6.6771 -2.0767 13 1 5.8395 -7.0973 -2.9609 14 1 5.0213 -7.0793 -0.6786 15 1 3.4657 -7.3298 -2.5219 16 6 2.8568 -1.8488 0.7393 17 7 2.0300 -0.7125 1.1848 18 6 1.7753 -0.3811 2.4662 19 8 2.1897 -1.0816 3.3689 20 6 0.9920 0.8345 2.7738 21 6 0.6337 1.7229 1.7585 22 7 -0.0693 2.8033 2.0274 23 6 -0.4521 3.0994 3.2543 24 6 -0.1324 2.2714 4.3227 25 7 -0.5464 2.5977 5.6227 26 6 -1.2668 3.6960 5.9799 27 6 -1.4403 3.6104 7.3197 28 7 -0.8297 2.4866 7.7117 29 7 -0.3155 1.9079 6.6848 30 6 0.6029 1.1156 4.0877 31 1 -0.3634 0.1717 1.0132 32 1 -0.3634 0.7917 -0.6552 33 1 -0.3634 -0.9633 -0.3579 34 1 2.9655 -0.2853 -1.6179 35 1 1.2917 -0.7917 -2.0190 36 1 3.9806 -2.3086 -2.0445 37 1 5.2196 -3.1461 -2.9752 38 1 2.7087 -2.7061 1.3959 39 1 3.9097 -1.5676 0.7152 40 1 0.9323 1.5195 0.7406 41 1 -1.0233 3.9988 3.4308 42 1 -1.6267 4.4772 5.3267 43 1 -1.9682 4.3119 7.9486 44 1 0.8665 0.4520 4.8979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989225856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:05 Heat of formation + Delta-G solvation = 145.767695 kcal Electronic energy + Delta-G solvation = -29078.948000 eV Core-core repulsion = 25035.223457 eV Total energy + Delta-G solvation = -4043.724543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.57110 -42.49167 -40.73386 -39.13172 -36.84934 -36.19069 -34.26239 -33.34308 -32.86059 -32.21016 -31.56145 -29.76510 -27.40365 -26.23335 -25.94201 -25.41026 -24.13015 -23.07662 -22.84784 -21.89709 -21.07565 -19.68204 -19.60174 -18.66416 -18.13404 -17.70981 -17.41762 -17.00503 -16.75797 -16.34373 -16.15001 -16.09664 -15.62279 -15.31378 -15.19946 -15.02469 -14.71014 -14.58396 -14.32457 -13.98260 -13.69327 -13.20760 -13.05055 -12.86375 -12.83063 -12.74373 -12.54210 -12.27335 -12.23551 -12.17248 -11.89840 -11.75635 -11.60558 -11.26188 -11.18968 -11.02920 -10.89141 -10.55782 -10.06744 -9.91243 -9.20677 -8.41486 -5.38188 -0.93398 -0.59530 0.72835 0.98694 1.48086 1.50927 1.57672 1.61503 1.66808 1.83136 2.41635 2.67518 2.85791 3.03420 3.13483 3.31609 3.33316 3.40685 3.46965 3.51484 3.65169 3.78653 3.84127 4.02883 4.08943 4.14233 4.16775 4.25359 4.27214 4.36888 4.54689 4.57547 4.65707 4.73461 4.78076 4.86002 4.91441 5.05429 5.08979 5.15173 5.16879 5.30752 5.52809 5.58224 6.25473 6.36210 6.49159 6.78434 7.04554 7.29162 7.93894 8.02557 9.10156 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.025090 B = 0.002214 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.726005 B =12642.831758 C =13485.673389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.112 3.888 3 H 0.123 0.877 4 C -0.122 4.122 5 C 0.173 3.827 6 H 0.060 0.940 7 N -0.733 5.733 8 C -0.336 4.336 9 H 0.063 0.937 10 C -0.096 4.096 11 N -0.970 5.970 12 Si 1.122 2.878 13 H -0.292 1.292 14 H -0.285 1.285 15 H -0.276 1.276 16 C 0.092 3.908 17 N -0.597 5.597 18 C 0.569 3.431 19 O -0.581 6.581 20 C -0.176 4.176 21 C 0.128 3.872 22 N -0.459 5.459 23 C 0.157 3.843 24 C 0.052 3.948 25 N -0.246 5.246 26 C -0.026 4.026 27 C -0.050 4.050 28 N -0.298 5.298 29 N -0.134 5.134 30 C -0.013 4.013 31 H 0.058 0.942 32 H 0.117 0.883 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.367 0.633 37 H 0.248 0.752 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.223 0.777 41 H 0.222 0.778 42 H 0.254 0.746 43 H 0.233 0.767 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.567 24.408 9.261 32.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.010 3.990 3 H 0.140 0.860 4 C -0.160 4.160 5 C 0.062 3.938 6 H 0.078 0.922 7 N -0.374 5.374 8 C -0.468 4.468 9 H 0.081 0.919 10 C -0.288 4.288 11 N -0.617 5.617 12 Si 0.947 3.053 13 H -0.218 1.218 14 H -0.211 1.211 15 H -0.201 1.201 16 C -0.034 4.034 17 N -0.329 5.329 18 C 0.358 3.642 19 O -0.462 6.462 20 C -0.182 4.182 21 C -0.028 4.028 22 N -0.166 5.166 23 C -0.003 4.003 24 C -0.042 4.042 25 N -0.034 5.034 26 C -0.174 4.174 27 C -0.206 4.206 28 N -0.163 5.163 29 N -0.111 5.111 30 C -0.041 4.041 31 H 0.077 0.923 32 H 0.135 0.865 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.129 0.871 36 H 0.201 0.799 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.238 0.762 41 H 0.238 0.762 42 H 0.270 0.730 43 H 0.250 0.750 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.206 21.898 9.308 29.363 hybrid contribution -0.282 0.988 1.239 1.609 sum -17.488 22.885 10.546 30.672 Atomic orbital electron populations 1.22777 0.92398 1.05272 1.03229 1.22364 0.96019 0.96883 0.83694 0.85994 1.22964 1.03183 0.93262 0.96590 1.21365 0.90952 0.93446 0.88054 0.92192 1.42402 1.38614 1.04179 1.52201 1.20306 1.16331 0.85052 1.25074 0.91909 1.27049 0.94896 1.10290 0.96607 1.70999 1.41464 1.06872 1.42413 0.82688 0.76331 0.70168 0.76076 1.21763 1.21111 1.20147 1.23056 0.94217 0.87549 0.98558 1.48483 1.49350 1.30171 1.04872 1.18010 0.79843 0.84856 0.81461 1.90796 1.54855 1.54274 1.46302 1.20629 1.04647 0.98120 0.94786 1.25354 0.88849 0.86640 1.01996 1.68203 1.11284 1.17171 1.19977 1.23678 0.93725 0.98014 0.84922 1.18709 1.04304 0.98657 0.82506 1.44768 1.35408 1.17109 1.06100 1.24847 1.00003 0.93849 0.98683 1.24484 1.03907 0.97704 0.94483 1.75112 1.11497 1.09162 1.20572 1.78510 1.22730 1.20933 0.88934 1.21420 0.91244 0.94471 0.97009 0.92289 0.86485 0.91529 0.89717 0.87130 0.79939 0.94139 0.93758 0.92793 0.76183 0.76189 0.73026 0.75020 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 7.64 71.98 0.55 -2.01 16 2 C 0.11 2.12 2.73 45.34 0.12 2.24 16 3 H 0.12 1.55 6.07 -2.39 -0.01 1.53 16 4 C -0.12 -2.85 6.02 31.78 0.19 -2.66 16 5 C 0.17 6.16 3.69 46.38 0.17 6.33 16 6 H 0.06 2.23 8.13 -2.38 -0.02 2.21 16 7 N -0.73 -34.14 5.27 -316.38 -1.67 -35.81 16 8 C -0.34 -18.24 9.98 84.03 0.84 -17.40 16 9 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 10 C -0.10 -5.44 5.50 84.86 0.47 -4.97 16 11 N -0.97 -58.60 13.70 21.65 0.30 -58.30 16 12 Si 1.12 51.44 29.92 68.60 2.05 53.49 16 13 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 14 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 15 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 16 C 0.09 3.40 6.62 86.86 0.57 3.97 16 17 N -0.60 -17.15 3.08 -793.38 -2.44 -19.59 16 18 C 0.57 17.88 7.54 86.79 0.65 18.54 16 19 O -0.58 -23.95 16.67 -3.88 -0.06 -24.02 16 20 C -0.18 -4.04 5.17 -20.01 -0.10 -4.14 16 21 C 0.13 1.98 7.74 85.04 0.66 2.64 16 22 N -0.46 -5.66 10.34 -194.31 -2.01 -7.67 16 23 C 0.16 1.48 10.62 84.84 0.90 2.38 16 24 C 0.05 0.87 6.69 38.13 0.26 1.12 16 25 N -0.25 -4.34 3.56 -186.83 -0.66 -5.00 16 26 C -0.03 -0.22 10.93 83.37 0.91 0.69 16 27 C -0.05 -0.60 12.05 83.74 1.01 0.41 16 28 N -0.30 -7.05 12.39 -58.25 -0.72 -7.77 16 29 N -0.13 -3.47 12.48 37.02 0.46 -3.01 16 30 C -0.01 -0.31 9.27 22.85 0.21 -0.10 16 31 H 0.06 0.94 4.78 -2.39 -0.01 0.93 16 32 H 0.12 0.86 8.09 -2.38 -0.02 0.84 16 33 H 0.07 1.12 7.98 -2.39 -0.02 1.10 16 34 H 0.08 1.97 8.00 -2.39 -0.02 1.95 16 35 H 0.11 2.13 7.83 -2.39 -0.02 2.11 16 36 H 0.37 17.48 6.54 -92.71 -0.61 16.87 16 37 H 0.25 14.67 6.77 -92.71 -0.63 14.04 16 38 H 0.04 1.88 8.00 -2.39 -0.02 1.86 16 39 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.22 2.66 2.21 -3.69 -0.01 2.65 16 41 H 0.22 -0.25 6.77 -2.91 -0.02 -0.27 16 42 H 0.25 -1.15 7.12 -2.91 -0.02 -1.17 16 43 H 0.23 0.71 8.06 -2.91 -0.02 0.69 16 44 H 0.14 4.00 7.46 -2.91 -0.02 3.98 16 Total: -1.00 -84.73 360.71 3.26 -81.47 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.61 Total: 19.16 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 7.41 Total: 7.04 kcal Atomic # 7 Polarization: -130.39 SS G_CDS: -6.75 Total: -137.14 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.06 Total: -24.02 kcal Atomic # 14 Polarization: 51.44 SS G_CDS: 2.05 Total: 53.49 kcal Total: -84.73 3.26 -81.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989225856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.239 kcal (2) G-P(sol) polarization free energy of solvation -84.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds