Wall clock time and date at job start Wed Apr 1 2020 00:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.99784 * 2 1 4 4 C 1.54335 * 109.77808 * 121.16499 * 2 1 3 5 5 C 1.55161 * 103.02015 * 97.49769 * 4 2 1 6 6 H 1.09004 * 111.00401 * 277.23112 * 5 4 2 7 7 N 1.46501 * 111.00066 * 153.38063 * 5 4 2 8 8 C 1.36937 * 119.99541 * 161.35095 * 7 5 4 9 9 H 1.08003 * 120.00109 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00089 * 179.97438 * 8 7 5 11 11 N 1.31625 * 119.99744 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00474 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46981 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47368 * 119.99618 * 12 10 8 15 15 H 1.48497 * 109.47320 * 240.00001 * 12 10 8 16 16 C 1.54902 * 101.58167 * 35.30556 * 5 4 2 17 17 N 1.47018 * 109.88101 * 238.90121 * 2 1 3 18 18 C 1.34780 * 125.64345 * 59.56475 * 17 2 1 19 19 O 1.21515 * 120.00386 * 3.38295 * 18 17 2 20 20 C 1.48160 * 119.99821 * 183.38859 * 18 17 2 21 21 C 1.39940 * 120.89231 * 334.73507 * 20 18 17 22 22 C 1.38064 * 119.13694 * 179.97438 * 21 20 18 23 23 N 1.31829 * 120.97768 * 359.97438 * 22 21 20 24 24 C 1.32234 * 121.98089 * 0.02562 * 23 22 21 25 25 N 1.39860 * 119.62779 * 179.97438 * 24 23 22 26 26 C 1.34802 * 126.84802 * 0.02562 * 25 24 23 27 27 N 1.30814 * 108.01961 * 179.97438 * 26 25 24 28 28 C 1.33291 * 109.85147 * 0.02562 * 27 26 25 29 29 N 1.30726 * 109.01242 * 359.74829 * 28 27 26 30 30 C 1.38905 * 120.74599 * 0.27403 * 24 23 22 31 31 H 1.09005 * 109.47356 * 179.64638 * 1 2 3 32 32 H 1.09007 * 109.47217 * 299.63767 * 1 2 3 33 33 H 1.08999 * 109.47269 * 59.64286 * 1 2 3 34 34 H 1.09005 * 110.85094 * 339.02774 * 4 2 1 35 35 H 1.09002 * 110.51357 * 215.80968 * 4 2 1 36 36 H 0.96993 * 120.00152 * 341.34626 * 7 5 4 37 37 H 0.96994 * 119.99962 * 179.97438 * 11 10 8 38 38 H 1.08998 * 110.36964 * 204.15598 * 16 5 4 39 39 H 1.08996 * 110.46300 * 81.87542 * 16 5 4 40 40 H 1.08005 * 120.43095 * 359.95330 * 21 20 18 41 41 H 1.07999 * 119.51093 * 180.02562 * 22 21 20 42 42 H 1.08000 * 125.99155 * 359.94138 * 26 25 24 43 43 H 1.07998 * 125.49713 * 179.97438 * 28 27 26 44 44 H 1.08002 * 120.52926 * 179.69753 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0522 -0.7516 1.2427 5 6 2.3561 -2.1698 0.6914 6 1 1.4521 -2.7779 0.6579 7 7 3.4000 -2.8275 1.4813 8 6 3.5512 -4.1871 1.4191 9 1 2.9007 -4.7745 0.7880 10 6 4.5406 -4.8104 2.1671 11 7 5.3337 -4.0946 2.9358 12 14 4.7464 -6.6651 2.0827 13 1 3.7382 -7.2332 1.1522 14 1 6.1100 -6.9900 1.5926 15 1 4.5551 -7.2464 3.4357 16 6 2.8613 -1.8466 -0.7368 17 7 2.0300 -0.7141 -1.1839 18 6 1.7753 -0.3844 -2.4657 19 8 1.1289 0.6127 -2.7197 20 6 2.2834 -1.2379 -3.5650 21 6 3.4134 -2.0436 -3.3856 22 6 3.8552 -2.8252 -4.4345 23 7 3.2288 -2.8212 -5.5944 24 6 2.1577 -2.0762 -5.8094 25 7 1.5318 -2.1096 -7.0597 26 6 1.9004 -2.8431 -8.1289 27 7 1.0601 -2.5936 -9.0999 28 6 0.1472 -1.7116 -8.6931 29 7 0.3908 -1.3893 -7.4499 30 6 1.6508 -1.2560 -4.8094 31 1 -0.3634 -1.0277 -0.0063 32 1 -0.3634 0.5082 0.8933 33 1 -0.3634 0.5194 -0.8867 34 1 1.2885 -0.7951 2.0192 35 1 2.9606 -0.2815 1.6197 36 1 3.9840 -2.3001 2.0483 37 1 6.0248 -4.5301 3.4587 38 1 2.7177 -2.7048 -1.3932 39 1 3.9125 -1.5594 -0.7133 40 1 3.9333 -2.0538 -2.4389 41 1 4.7264 -3.4496 -4.3025 42 1 2.7422 -3.5181 -8.1758 43 1 -0.6651 -1.3281 -9.2927 44 1 0.7786 -0.6453 -4.9904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989856734.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:31 Heat of formation + Delta-G solvation = 136.560947 kcal Electronic energy + Delta-G solvation = -29135.926110 eV Core-core repulsion = 25091.802332 eV Total energy + Delta-G solvation = -4044.123777 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.65861 -40.99759 -39.67611 -37.60566 -34.75983 -34.34408 -33.31824 -31.78002 -31.55359 -31.37860 -30.13384 -28.51921 -26.02259 -25.35446 -24.63847 -24.00804 -22.86186 -21.96922 -21.56595 -20.51552 -19.65769 -18.44771 -17.49883 -17.35187 -16.38994 -16.33391 -15.90506 -15.84475 -15.68358 -15.34198 -14.71010 -14.59948 -14.39331 -14.33350 -14.06181 -13.57943 -13.38826 -13.21667 -13.05090 -12.67496 -12.55323 -12.38949 -11.98734 -11.96894 -11.34740 -11.30831 -11.08171 -10.88038 -10.75198 -10.53721 -10.41979 -10.38522 -10.26261 -10.22978 -10.10245 -9.91747 -9.81801 -9.15937 -8.96848 -8.61021 -7.23225 -5.97811 -3.29713 0.14815 0.49801 1.50913 1.57888 2.54478 2.67780 2.84028 3.30498 3.37418 3.39298 3.47001 3.81441 3.98037 4.08731 4.24046 4.42036 4.55449 4.60788 4.73014 4.87256 4.91605 5.00685 5.10726 5.30567 5.33508 5.34927 5.42843 5.47655 5.65021 5.68950 5.72126 5.78735 5.87847 5.92919 5.95744 6.03623 6.04792 6.13091 6.26036 6.36197 6.43232 6.53167 6.67136 7.20819 7.48120 7.52333 7.68511 8.02452 8.19352 9.31830 9.83776 10.18704 11.23825 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.011416 B = 0.002987 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.134084 B = 9372.968025 C =11317.356827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 H 0.075 0.925 4 C -0.137 4.137 5 C 0.174 3.826 6 H 0.066 0.934 7 N -0.711 5.711 8 C -0.252 4.252 9 H 0.073 0.927 10 C -0.006 4.006 11 N -0.927 5.927 12 Si 0.907 3.093 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.290 1.290 16 C 0.059 3.941 17 N -0.597 5.597 18 C 0.570 3.430 19 O -0.534 6.534 20 C -0.057 4.057 21 C -0.153 4.153 22 C 0.134 3.866 23 N -0.489 5.489 24 C 0.349 3.651 25 N -0.330 5.330 26 C 0.291 3.709 27 N -0.542 5.542 28 C 0.212 3.788 29 N -0.307 5.307 30 C -0.102 4.102 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.388 0.612 37 H 0.257 0.743 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.170 0.830 41 H 0.180 0.820 42 H 0.228 0.772 43 H 0.226 0.774 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.808 5.643 -14.819 16.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.093 0.907 4 C -0.176 4.176 5 C 0.061 3.939 6 H 0.084 0.916 7 N -0.351 5.351 8 C -0.383 4.383 9 H 0.091 0.909 10 C -0.203 4.203 11 N -0.574 5.574 12 Si 0.738 3.262 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.217 1.217 16 C -0.067 4.067 17 N -0.330 5.330 18 C 0.358 3.642 19 O -0.412 6.412 20 C -0.068 4.068 21 C -0.173 4.173 22 C -0.024 4.024 23 N -0.202 5.202 24 C 0.122 3.878 25 N -0.116 5.116 26 C -0.005 4.005 27 N -0.268 5.268 28 C -0.091 4.091 29 N -0.132 5.132 30 C -0.126 4.126 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.223 0.777 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.187 0.813 41 H 0.197 0.803 42 H 0.245 0.755 43 H 0.243 0.757 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.291 5.843 -15.580 17.789 hybrid contribution 0.384 -0.575 0.817 1.070 sum -5.907 5.268 -14.763 16.751 Atomic orbital electron populations 1.22147 0.94764 1.02484 1.02668 1.21576 0.94589 0.96066 0.84118 0.90683 1.23015 1.01979 0.96789 0.95779 1.21293 0.92857 0.91386 0.88350 0.91592 1.42333 1.36851 1.04990 1.50946 1.19261 1.13385 0.83101 1.22557 0.90891 1.24776 0.98257 0.98079 0.99142 1.69663 1.22007 1.34451 1.31272 0.86135 0.77574 0.85113 0.77419 1.20415 1.21659 1.21707 1.23979 0.94846 0.87373 1.00469 1.48500 1.49445 1.30798 1.04216 1.17654 0.80405 0.84712 0.81441 1.90773 1.40560 1.26562 1.83274 1.20242 0.95868 0.96737 0.93986 1.23236 0.96503 0.95152 1.02453 1.22624 0.97866 0.96249 0.85625 1.66680 1.06942 1.20768 1.25854 1.17458 0.91617 0.95432 0.83281 1.47478 1.21476 1.33028 1.09600 1.26430 0.98465 0.94061 0.81499 1.70726 1.06845 1.19341 1.29894 1.26289 0.98543 0.93714 0.90566 1.78249 1.00534 1.18620 1.15839 1.21642 1.01729 0.98447 0.90746 0.92281 0.91568 0.91532 0.89817 0.90314 0.77738 0.93260 0.90377 0.90367 0.81299 0.80270 0.75544 0.75742 0.82436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.06 37.16 0.34 -1.69 16 2 C 0.14 1.86 3.49 -66.95 -0.23 1.62 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.14 -1.89 6.11 -24.89 -0.15 -2.05 16 5 C 0.17 2.89 3.69 -65.78 -0.24 2.65 16 6 H 0.07 1.15 8.13 -51.93 -0.42 0.72 16 7 N -0.71 -15.26 5.28 -51.35 -0.27 -15.53 16 8 C -0.25 -6.16 9.98 -15.06 -0.15 -6.31 16 9 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 10 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 11 N -0.93 -25.56 13.06 55.49 0.72 -24.83 16 12 Si 0.91 20.52 29.55 -169.99 -5.02 15.50 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 C 0.06 0.85 4.73 -2.53 -0.01 0.84 16 17 N -0.60 -8.43 3.08 -164.01 -0.51 -8.94 16 18 C 0.57 8.56 7.46 -12.18 -0.09 8.47 16 19 O -0.53 -9.32 15.72 5.35 0.08 -9.24 16 20 C -0.06 -0.75 5.75 -104.67 -0.60 -1.35 16 21 C -0.15 -1.72 8.06 -39.01 -0.31 -2.03 16 22 C 0.13 1.34 11.17 -17.62 -0.20 1.15 16 23 N -0.49 -5.54 9.87 -12.33 -0.12 -5.67 16 24 C 0.35 4.39 7.56 -154.40 -1.17 3.22 16 25 N -0.33 -4.04 3.81 -13.36 -0.05 -4.10 16 26 C 0.29 3.04 12.26 -90.33 -1.11 1.93 16 27 N -0.54 -5.98 11.19 -15.73 -0.18 -6.15 16 28 C 0.21 2.13 13.03 -91.76 -1.20 0.93 16 29 N -0.31 -3.80 12.02 29.30 0.35 -3.45 16 30 C -0.10 -1.36 9.29 -38.82 -0.36 -1.72 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.07 0.92 6.85 -51.93 -0.36 0.57 16 34 H 0.08 1.09 7.83 -51.93 -0.41 0.68 16 35 H 0.08 1.10 8.00 -51.93 -0.42 0.68 16 36 H 0.39 8.95 7.71 -40.82 -0.31 8.63 16 37 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.08 1.10 6.05 -51.93 -0.31 0.79 16 39 H 0.08 1.15 7.36 -51.93 -0.38 0.77 16 40 H 0.17 1.84 4.52 -52.48 -0.24 1.60 16 41 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.23 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.23 1.29 8.06 -52.49 -0.42 0.86 16 44 H 0.16 2.21 7.60 -52.49 -0.40 1.81 16 LS Contribution 370.81 15.07 5.59 5.59 Total: -1.00 -31.08 370.81 -10.31 -41.39 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.33 Total: 10.01 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -5.58 Total: 5.41 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: -0.05 Total: -68.67 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.24 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.08 -10.31 -41.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989856734.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.956 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds