Wall clock time and date at job start Wed Apr 1 2020 00:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.99784 * 2 1 4 4 C 1.54335 * 109.77808 * 121.16499 * 2 1 3 5 5 C 1.55161 * 103.02015 * 97.49769 * 4 2 1 6 6 H 1.09004 * 111.00401 * 277.23112 * 5 4 2 7 7 N 1.46501 * 111.00066 * 153.38063 * 5 4 2 8 8 C 1.36937 * 119.99541 * 161.35095 * 7 5 4 9 9 H 1.08003 * 120.00109 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00089 * 179.97438 * 8 7 5 11 11 N 1.31625 * 119.99744 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00474 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46981 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47368 * 119.99618 * 12 10 8 15 15 H 1.48497 * 109.47320 * 240.00001 * 12 10 8 16 16 C 1.54902 * 101.58167 * 35.30556 * 5 4 2 17 17 N 1.47018 * 109.88101 * 238.90121 * 2 1 3 18 18 C 1.34780 * 125.64345 * 59.56475 * 17 2 1 19 19 O 1.21515 * 120.00386 * 3.38295 * 18 17 2 20 20 C 1.48160 * 119.99821 * 183.38859 * 18 17 2 21 21 C 1.39940 * 120.89231 * 334.73507 * 20 18 17 22 22 C 1.38064 * 119.13694 * 179.97438 * 21 20 18 23 23 N 1.31829 * 120.97768 * 359.97438 * 22 21 20 24 24 C 1.32234 * 121.98089 * 0.02562 * 23 22 21 25 25 N 1.39860 * 119.62779 * 179.97438 * 24 23 22 26 26 C 1.34802 * 126.84802 * 0.02562 * 25 24 23 27 27 N 1.30814 * 108.01961 * 179.97438 * 26 25 24 28 28 C 1.33291 * 109.85147 * 0.02562 * 27 26 25 29 29 N 1.30726 * 109.01242 * 359.74829 * 28 27 26 30 30 C 1.38905 * 120.74599 * 0.27403 * 24 23 22 31 31 H 1.09005 * 109.47356 * 179.64638 * 1 2 3 32 32 H 1.09007 * 109.47217 * 299.63767 * 1 2 3 33 33 H 1.08999 * 109.47269 * 59.64286 * 1 2 3 34 34 H 1.09005 * 110.85094 * 339.02774 * 4 2 1 35 35 H 1.09002 * 110.51357 * 215.80968 * 4 2 1 36 36 H 0.96993 * 120.00152 * 341.34626 * 7 5 4 37 37 H 0.96994 * 119.99962 * 179.97438 * 11 10 8 38 38 H 1.08998 * 110.36964 * 204.15598 * 16 5 4 39 39 H 1.08996 * 110.46300 * 81.87542 * 16 5 4 40 40 H 1.08005 * 120.43095 * 359.95330 * 21 20 18 41 41 H 1.07999 * 119.51093 * 180.02562 * 22 21 20 42 42 H 1.08000 * 125.99155 * 359.94138 * 26 25 24 43 43 H 1.07998 * 125.49713 * 179.97438 * 28 27 26 44 44 H 1.08002 * 120.52926 * 179.69753 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0522 -0.7516 1.2427 5 6 2.3561 -2.1698 0.6914 6 1 1.4521 -2.7779 0.6579 7 7 3.4000 -2.8275 1.4813 8 6 3.5512 -4.1871 1.4191 9 1 2.9007 -4.7745 0.7880 10 6 4.5406 -4.8104 2.1671 11 7 5.3337 -4.0946 2.9358 12 14 4.7464 -6.6651 2.0827 13 1 3.7382 -7.2332 1.1522 14 1 6.1100 -6.9900 1.5926 15 1 4.5551 -7.2464 3.4357 16 6 2.8613 -1.8466 -0.7368 17 7 2.0300 -0.7141 -1.1839 18 6 1.7753 -0.3844 -2.4657 19 8 1.1289 0.6127 -2.7197 20 6 2.2834 -1.2379 -3.5650 21 6 3.4134 -2.0436 -3.3856 22 6 3.8552 -2.8252 -4.4345 23 7 3.2288 -2.8212 -5.5944 24 6 2.1577 -2.0762 -5.8094 25 7 1.5318 -2.1096 -7.0597 26 6 1.9004 -2.8431 -8.1289 27 7 1.0601 -2.5936 -9.0999 28 6 0.1472 -1.7116 -8.6931 29 7 0.3908 -1.3893 -7.4499 30 6 1.6508 -1.2560 -4.8094 31 1 -0.3634 -1.0277 -0.0063 32 1 -0.3634 0.5082 0.8933 33 1 -0.3634 0.5194 -0.8867 34 1 1.2885 -0.7951 2.0192 35 1 2.9606 -0.2815 1.6197 36 1 3.9840 -2.3001 2.0483 37 1 6.0248 -4.5301 3.4587 38 1 2.7177 -2.7048 -1.3932 39 1 3.9125 -1.5594 -0.7133 40 1 3.9333 -2.0538 -2.4389 41 1 4.7264 -3.4496 -4.3025 42 1 2.7422 -3.5181 -8.1758 43 1 -0.6651 -1.3281 -9.2927 44 1 0.7786 -0.6453 -4.9904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989856734.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:30 Heat of formation + Delta-G solvation = 119.899178 kcal Electronic energy + Delta-G solvation = -29136.648618 eV Core-core repulsion = 25091.802332 eV Total energy + Delta-G solvation = -4044.846286 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.48630 -42.03370 -40.73806 -38.87298 -36.01020 -35.63635 -34.29829 -33.23944 -32.67399 -32.37175 -31.04179 -30.02409 -27.12998 -26.44713 -25.65882 -25.52879 -23.90000 -22.84259 -22.59600 -21.74193 -20.72702 -19.48553 -19.24140 -18.39258 -17.41768 -17.24439 -17.06420 -16.90102 -16.77746 -16.32508 -16.21964 -15.66999 -15.42441 -15.14273 -15.13179 -14.98643 -14.74539 -14.61140 -14.24404 -13.94830 -13.42878 -13.38985 -13.14063 -13.08106 -12.97472 -12.81059 -12.29841 -12.15848 -12.09994 -11.96552 -11.69792 -11.51347 -11.48417 -11.35444 -11.21962 -11.08885 -11.04283 -10.77048 -9.89615 -9.79234 -9.02415 -7.91765 -5.21371 -0.76439 -0.45240 0.67237 0.74293 1.52403 1.54194 1.56078 1.63013 1.71429 1.78652 2.52192 2.58852 2.91476 3.13000 3.28415 3.34512 3.39291 3.61546 3.63971 3.74746 3.82693 3.93353 3.96926 4.07433 4.17132 4.31790 4.40483 4.46613 4.47627 4.51648 4.66816 4.70504 4.77209 4.87507 4.96958 5.00477 5.07947 5.14281 5.22642 5.27331 5.28836 5.42018 5.59116 5.69873 6.28552 6.30947 6.33562 6.85053 6.86572 7.38164 8.08313 8.32644 9.30934 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.011416 B = 0.002987 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.134084 B = 9372.968025 C =11317.356827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.138 3.862 3 H 0.080 0.920 4 C -0.125 4.125 5 C 0.167 3.833 6 H 0.062 0.938 7 N -0.721 5.721 8 C -0.238 4.238 9 H 0.080 0.920 10 C -0.065 4.065 11 N -0.964 5.964 12 Si 0.963 3.037 13 H -0.265 1.265 14 H -0.294 1.294 15 H -0.301 1.301 16 C 0.072 3.928 17 N -0.594 5.594 18 C 0.570 3.430 19 O -0.564 6.564 20 C -0.067 4.067 21 C -0.149 4.149 22 C 0.145 3.855 23 N -0.486 5.486 24 C 0.346 3.654 25 N -0.343 5.343 26 C 0.295 3.705 27 N -0.557 5.557 28 C 0.218 3.782 29 N -0.343 5.343 30 C -0.115 4.115 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.379 0.621 37 H 0.250 0.750 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.175 0.825 41 H 0.217 0.783 42 H 0.255 0.745 43 H 0.261 0.739 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.824 4.828 -15.988 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.035 3.965 3 H 0.098 0.902 4 C -0.163 4.163 5 C 0.056 3.944 6 H 0.080 0.920 7 N -0.360 5.360 8 C -0.369 4.369 9 H 0.098 0.902 10 C -0.258 4.258 11 N -0.614 5.614 12 Si 0.793 3.207 13 H -0.190 1.190 14 H -0.221 1.221 15 H -0.229 1.229 16 C -0.053 4.053 17 N -0.326 5.326 18 C 0.358 3.642 19 O -0.444 6.444 20 C -0.079 4.079 21 C -0.170 4.170 22 C -0.013 4.013 23 N -0.199 5.199 24 C 0.120 3.880 25 N -0.129 5.129 26 C 0.000 4.000 27 N -0.283 5.283 28 C -0.084 4.084 29 N -0.168 5.168 30 C -0.139 4.139 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.212 0.788 37 H 0.059 0.941 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.192 0.808 41 H 0.233 0.767 42 H 0.271 0.729 43 H 0.277 0.723 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.357 5.036 -16.794 18.649 hybrid contribution 0.317 -0.277 1.098 1.176 sum -6.040 4.759 -15.696 17.478 Atomic orbital electron populations 1.22092 0.93976 1.02325 1.02994 1.21659 0.95199 0.96134 0.83479 0.90237 1.22926 1.02424 0.94806 0.96170 1.21426 0.91404 0.92484 0.89090 0.92012 1.42423 1.37726 1.04217 1.51622 1.19595 1.12054 0.84502 1.20787 0.90218 1.25429 0.98973 1.01440 0.99982 1.69793 1.23077 1.35619 1.32957 0.85228 0.77378 0.81224 0.76825 1.18975 1.22123 1.22885 1.23700 0.94806 0.87800 0.98977 1.48491 1.49202 1.30563 1.04344 1.17918 0.79881 0.84510 0.81861 1.90755 1.41979 1.27947 1.83680 1.20134 0.96916 0.97406 0.93397 1.23297 0.95708 0.94839 1.03140 1.23242 0.98052 0.95405 0.84554 1.66823 1.06457 1.20365 1.26295 1.17530 0.91858 0.95307 0.83355 1.47541 1.21810 1.33698 1.09845 1.27039 0.98674 0.93516 0.80779 1.70784 1.07398 1.19937 1.30217 1.27049 0.98663 0.92583 0.90087 1.78237 1.01432 1.20005 1.17127 1.21508 1.01817 0.99208 0.91327 0.92604 0.89369 0.93096 0.88636 0.90248 0.78835 0.94058 0.89627 0.90127 0.80788 0.76663 0.72943 0.72316 0.84029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 9.06 71.98 0.65 -3.05 16 2 C 0.14 3.50 3.49 45.35 0.16 3.66 16 3 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 4 C -0.12 -3.26 6.11 31.79 0.19 -3.06 16 5 C 0.17 5.31 3.69 46.38 0.17 5.48 16 6 H 0.06 2.05 8.13 -2.39 -0.02 2.03 16 7 N -0.72 -30.25 5.28 -316.37 -1.67 -31.92 16 8 C -0.24 -11.33 9.98 84.03 0.84 -10.49 16 9 H 0.08 3.64 7.83 -2.91 -0.02 3.61 16 10 C -0.07 -3.34 5.50 84.86 0.47 -2.88 16 11 N -0.96 -53.49 13.06 21.65 0.28 -53.21 16 12 Si 0.96 41.80 29.55 68.60 2.03 43.83 16 13 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 14 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 15 H -0.30 -13.48 7.11 99.48 0.71 -12.78 16 16 C 0.07 1.98 4.73 86.85 0.41 2.39 16 17 N -0.59 -16.20 3.08 -791.09 -2.44 -18.63 16 18 C 0.57 16.95 7.46 86.88 0.65 17.60 16 19 O -0.56 -19.94 15.72 -3.76 -0.06 -19.99 16 20 C -0.07 -1.73 5.75 -19.90 -0.11 -1.85 16 21 C -0.15 -3.07 8.06 22.64 0.18 -2.89 16 22 C 0.15 2.51 11.17 84.65 0.95 3.46 16 23 N -0.49 -9.99 9.87 -192.94 -1.90 -11.89 16 24 C 0.35 8.40 7.56 132.76 1.00 9.41 16 25 N -0.34 -8.15 3.81 -196.17 -0.75 -8.90 16 26 C 0.30 5.71 12.26 180.25 2.21 7.92 16 27 N -0.56 -11.48 11.19 -203.69 -2.28 -13.75 16 28 C 0.22 4.13 13.03 180.75 2.35 6.48 16 29 N -0.34 -8.37 12.02 -61.21 -0.74 -9.11 16 30 C -0.12 -3.07 9.29 22.76 0.21 -2.86 16 31 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.05 1.39 6.85 -2.39 -0.02 1.37 16 34 H 0.10 2.29 7.83 -2.38 -0.02 2.27 16 35 H 0.08 2.10 8.00 -2.39 -0.02 2.08 16 36 H 0.38 17.34 7.71 -92.71 -0.71 16.62 16 37 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 38 H 0.09 2.25 6.05 -2.39 -0.01 2.23 16 39 H 0.08 2.23 7.36 -2.39 -0.02 2.21 16 40 H 0.18 3.40 4.52 -2.91 -0.01 3.38 16 41 H 0.22 2.10 8.06 -2.91 -0.02 2.08 16 42 H 0.25 3.11 8.06 -2.91 -0.02 3.08 16 43 H 0.26 2.48 8.06 -2.91 -0.02 2.45 16 44 H 0.14 4.18 7.60 -2.91 -0.02 4.16 16 Total: -1.00 -66.93 370.81 3.16 -63.77 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.34 Total: 30.50 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: 10.33 Total: 29.30 kcal Atomic # 7 Polarization: -137.92 SS G_CDS: -9.49 Total: -147.41 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.06 Total: -19.99 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -66.93 3.16 -63.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989856734.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.673 kcal (2) G-P(sol) polarization free energy of solvation -66.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds