Wall clock time and date at job start Wed Apr 1 2020 01:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99759 * 2 1 4 4 H 1.48501 * 109.47187 * 270.00071 * 3 2 1 5 5 H 1.48494 * 109.47151 * 30.00476 * 3 2 1 6 6 H 1.48504 * 109.47045 * 150.00470 * 3 2 1 7 7 C 1.38810 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00186 * 359.97438 * 7 2 1 9 9 N 1.36942 * 120.00050 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00061 * 180.02562 * 9 7 2 11 11 H 1.09007 * 110.44081 * 34.29561 * 10 9 7 12 12 C 1.55936 * 110.60400 * 271.65814 * 10 9 7 13 13 C 1.56403 * 105.78801 * 248.81556 * 12 10 9 14 14 C 1.51002 * 101.59299 * 25.01886 * 13 12 10 15 15 H 1.08995 * 109.72548 * 69.24432 * 14 13 12 16 16 C 1.50319 * 124.69900 * 204.34235 * 14 13 12 17 17 N 1.49206 * 104.33274 * 145.19490 * 16 14 13 18 18 C 1.34777 * 126.06302 * 172.12773 * 17 16 14 19 19 O 1.21578 * 120.00356 * 175.90835 * 18 17 16 20 20 C 1.47604 * 119.99738 * 355.90788 * 18 17 16 21 21 C 1.39754 * 120.26597 * 209.95025 * 20 18 17 22 22 C 1.37466 * 120.20213 * 179.89495 * 21 20 18 23 23 C 1.39593 * 120.43154 * 0.59855 * 22 21 20 24 24 C 1.39191 * 119.09947 * 359.37534 * 23 22 21 25 25 C 1.37305 * 120.93440 * 0.42927 * 24 23 22 26 26 C 1.51677 * 106.99381 * 180.69549 * 24 23 22 27 27 C 1.54707 * 101.89345 * 15.49434 * 26 24 23 28 28 O 1.35992 * 129.71927 * 179.05499 * 23 22 21 29 29 C 1.49705 * 107.88180 * 352.16316 * 17 16 14 30 30 C 1.50289 * 110.49287 * 156.85648 * 10 9 7 31 31 H 1.09004 * 109.99514 * 199.28154 * 30 10 9 32 32 H 0.97000 * 120.00324 * 359.97438 * 1 2 3 33 33 H 0.96995 * 120.00180 * 359.97438 * 9 7 2 34 34 H 1.08996 * 110.18797 * 7.89711 * 12 10 9 35 35 H 1.09004 * 110.18720 * 129.74149 * 12 10 9 36 36 H 1.09007 * 111.00524 * 266.94226 * 13 12 10 37 37 H 1.09000 * 111.03323 * 143.11313 * 13 12 10 38 38 H 1.08999 * 111.27354 * 26.18946 * 16 14 13 39 39 H 1.09008 * 109.95890 * 263.54647 * 16 14 13 40 40 H 1.08003 * 119.89738 * 0.16455 * 21 20 18 41 41 H 1.08008 * 119.78748 * 180.34554 * 22 21 20 42 42 H 1.08005 * 120.06606 * 179.75850 * 25 24 23 43 43 H 1.08995 * 110.94117 * 133.63855 * 26 24 23 44 44 H 1.08997 * 110.94498 * 257.30569 * 26 24 23 45 45 H 1.09000 * 110.74338 * 92.96199 * 27 26 24 46 46 H 1.09004 * 110.73843 * 216.11574 * 27 26 24 47 47 H 1.08997 * 110.84196 * 216.67125 * 29 17 16 48 48 H 1.08994 * 111.01538 * 93.13497 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0022 11 1 3.5716 -3.2220 -0.5780 12 6 4.3506 -2.9681 1.4564 13 6 5.8897 -2.8404 1.7033 14 6 6.2660 -1.7577 0.7203 15 1 5.8480 -0.8048 1.0447 16 6 7.6393 -1.5696 0.1387 17 7 7.3890 -1.0912 -1.2523 18 6 8.3209 -0.6446 -2.1174 19 8 8.0042 -0.3500 -3.2536 20 6 9.7262 -0.5133 -1.6855 21 6 10.5498 0.4619 -2.2546 22 6 11.8578 0.5845 -1.8497 23 6 12.3799 -0.2698 -0.8771 24 6 11.5546 -1.2386 -0.3135 25 6 10.2456 -1.3669 -0.7077 26 6 12.3865 -1.9898 0.7084 27 6 13.5970 -1.0439 0.8915 28 8 13.6342 -0.3285 -0.3547 29 6 5.9190 -1.1943 -1.5163 30 6 5.4961 -2.2788 -0.5559 31 1 5.9075 -3.2375 -0.8719 32 1 -0.4850 0.8400 0.0004 33 1 3.8646 -0.3621 -0.0014 34 1 3.8033 -2.3423 2.1613 35 1 4.0389 -4.0080 1.5549 36 1 6.4016 -3.7743 1.4707 37 1 6.0971 -2.5281 2.7268 38 1 8.1941 -2.5077 0.1231 39 1 8.1839 -0.8154 0.7070 40 1 10.1562 1.1240 -3.0116 41 1 12.4868 1.3442 -2.2901 42 1 9.6188 -2.1262 -0.2638 43 1 11.8401 -2.1089 1.6439 44 1 12.7027 -2.9572 0.3182 45 1 13.4304 -0.3605 1.7242 46 1 14.5138 -1.6146 1.0398 47 1 5.7303 -1.4939 -2.5472 48 1 5.4141 -0.2557 -1.2882 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026361266.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:21 Heat of formation + Delta-G solvation = 8.056384 kcal Electronic energy + Delta-G solvation = -30033.268599 eV Core-core repulsion = 26054.820038 eV Total energy + Delta-G solvation = -3978.448561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.57549 -40.71698 -38.99825 -37.18240 -35.46046 -33.44161 -33.12815 -31.31807 -31.09358 -29.65216 -29.10296 -28.86676 -25.82378 -24.65357 -23.64515 -22.94383 -22.46232 -22.08033 -20.16356 -19.59121 -19.06639 -18.00462 -17.76810 -17.17855 -17.07188 -16.55253 -16.14733 -15.26409 -15.09144 -14.92703 -14.42530 -14.39046 -14.09455 -13.90691 -13.69468 -13.55868 -13.35695 -13.14369 -12.90878 -12.82725 -12.60797 -12.37094 -12.23087 -12.02561 -11.94181 -11.50622 -11.22040 -11.17076 -11.11293 -10.90932 -10.74448 -10.49986 -10.39674 -10.15665 -9.95336 -9.72967 -9.59106 -9.30579 -8.96820 -8.74151 -8.47773 -7.31231 -5.79961 -3.15991 0.62244 0.94660 2.59753 2.75823 2.89255 3.34194 3.38087 3.44252 3.47384 3.91615 4.00331 4.10091 4.37101 4.46786 4.53297 4.56059 4.72803 4.80240 4.92602 4.94145 5.03276 5.06096 5.17050 5.25102 5.27792 5.28612 5.36793 5.43278 5.49319 5.52289 5.59794 5.62400 5.72027 5.80681 5.85924 5.93043 5.95608 6.00562 6.07360 6.13733 6.16319 6.22776 6.29272 6.35730 6.46733 6.66768 6.72356 6.90820 7.45546 7.96316 8.10816 8.39200 9.16789 9.89379 10.08156 11.38305 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.002807 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.708351 B = 9972.228411 C =10726.265272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.879 3.121 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.092 0.908 9 N -0.743 5.743 10 C 0.200 3.800 11 H 0.065 0.935 12 C -0.144 4.144 13 C -0.097 4.097 14 C -0.133 4.133 15 H 0.088 0.912 16 C 0.118 3.882 17 N -0.621 5.621 18 C 0.577 3.423 19 O -0.538 6.538 20 C -0.153 4.153 21 C -0.027 4.027 22 C -0.145 4.145 23 C 0.126 3.874 24 C -0.184 4.184 25 C -0.048 4.048 26 C -0.109 4.109 27 C 0.051 3.949 28 O -0.303 6.303 29 C 0.130 3.870 30 C -0.123 4.123 31 H 0.082 0.918 32 H 0.260 0.740 33 H 0.360 0.640 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.143 0.857 41 H 0.135 0.865 42 H 0.143 0.857 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.108 0.892 47 H 0.083 0.917 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.006 -5.312 4.054 28.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.709 3.291 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.110 0.890 9 N -0.386 5.386 10 C 0.090 3.910 11 H 0.083 0.917 12 C -0.185 4.185 13 C -0.135 4.135 14 C -0.152 4.152 15 H 0.106 0.894 16 C -0.004 4.004 17 N -0.355 5.355 18 C 0.366 3.634 19 O -0.416 6.416 20 C -0.157 4.157 21 C -0.046 4.046 22 C -0.164 4.164 23 C 0.080 3.920 24 C -0.185 4.185 25 C -0.067 4.067 26 C -0.146 4.146 27 C -0.024 4.024 28 O -0.216 6.216 29 C 0.009 3.991 30 C -0.143 4.143 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.194 0.806 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.161 0.839 41 H 0.153 0.847 42 H 0.160 0.840 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.098 0.902 46 H 0.126 0.874 47 H 0.102 0.898 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 27.844 -5.084 3.294 28.495 hybrid contribution 0.534 1.178 0.282 1.324 sum 28.378 -3.906 3.576 28.868 Atomic orbital electron populations 1.69688 1.05078 1.25831 1.57375 1.24652 0.95175 0.97072 1.01973 0.86652 0.79140 0.85328 0.77976 1.20891 1.21680 1.20518 1.19071 0.80497 0.94704 1.43110 0.89043 1.42804 1.04004 1.01777 1.89970 1.20104 0.88417 0.89693 0.92833 0.91669 1.23812 0.93495 1.01003 1.00180 1.21746 0.97443 0.96642 0.97690 1.22326 0.94278 1.01260 0.97293 0.89389 1.21597 0.97490 0.99048 0.82240 1.49764 1.08009 1.63772 1.13955 1.17759 0.84243 0.77070 0.84314 1.90804 1.81593 1.50602 1.18580 1.19740 0.94353 1.00806 1.00753 1.20950 0.91507 0.95752 0.96419 1.20204 0.95468 1.00596 1.00117 1.19855 0.83993 0.93674 0.94492 1.20673 0.95267 0.99460 1.03112 1.20968 0.93623 0.97954 0.94108 1.21807 0.94892 0.99156 0.98763 1.23878 0.99797 0.93641 0.85117 1.86802 1.24957 1.73876 1.35989 1.21455 0.78025 0.99385 1.00221 1.22535 0.98766 0.98248 0.94773 0.89958 0.93023 0.80602 0.90407 0.92338 0.91825 0.91916 0.90786 0.90883 0.83938 0.84687 0.83970 0.88674 0.88948 0.90245 0.87381 0.89825 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.84 13.97 55.49 0.78 -28.07 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 21.90 27.73 -169.99 -4.71 17.19 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 7 C -0.24 -6.59 10.45 -15.06 -0.16 -6.75 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 9 N -0.74 -16.41 4.64 -53.21 -0.25 -16.66 16 10 C 0.20 3.48 3.45 -67.71 -0.23 3.25 16 11 H 0.07 1.19 8.10 -51.93 -0.42 0.76 16 12 C -0.14 -2.16 6.74 -23.33 -0.16 -2.32 16 13 C -0.10 -1.11 6.70 -25.91 -0.17 -1.29 16 14 C -0.13 -1.67 2.71 -90.28 -0.24 -1.91 16 15 H 0.09 1.31 7.68 -51.93 -0.40 0.91 16 16 C 0.12 1.28 4.95 -3.88 -0.02 1.26 16 17 N -0.62 -8.72 3.43 -172.78 -0.59 -9.31 16 18 C 0.58 8.78 7.63 -12.44 -0.09 8.69 16 19 O -0.54 -10.09 17.03 5.30 0.09 -10.00 16 20 C -0.15 -1.89 5.72 -104.92 -0.60 -2.49 16 21 C -0.03 -0.31 9.57 -39.30 -0.38 -0.69 16 22 C -0.15 -1.45 10.05 -39.36 -0.40 -1.85 16 23 C 0.13 1.27 7.04 -38.72 -0.27 1.00 16 24 C -0.18 -1.69 6.26 -104.13 -0.65 -2.34 16 25 C -0.05 -0.48 8.34 -39.33 -0.33 -0.81 16 26 C -0.11 -0.63 7.12 -26.50 -0.19 -0.82 16 27 C 0.05 0.28 8.00 38.06 0.30 0.59 16 28 O -0.30 -2.83 11.09 -19.71 -0.22 -3.05 16 29 C 0.13 2.06 6.50 -3.31 -0.02 2.04 16 30 C -0.12 -1.78 2.63 -90.34 -0.24 -2.02 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 33 H 0.36 7.97 3.99 -40.82 -0.16 7.80 16 34 H 0.08 1.36 7.99 -51.93 -0.41 0.94 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.64 6.15 -51.93 -0.32 0.32 16 39 H 0.07 0.73 7.60 -51.92 -0.39 0.33 16 40 H 0.14 1.55 7.92 -52.48 -0.42 1.14 16 41 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 42 H 0.14 1.20 4.45 -52.48 -0.23 0.97 16 43 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 1.39 8.06 -51.93 -0.42 0.98 16 48 H 0.08 1.36 6.89 -51.93 -0.36 1.00 16 LS Contribution 376.38 15.07 5.67 5.67 Total: -1.00 -33.54 376.38 -10.11 -43.65 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -6.93 Total: 6.93 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -3.94 Total: -6.35 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.06 Total: -54.04 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.13 Total: -13.05 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.54 -10.11 -43.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026361266.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.709 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds