Wall clock time and date at job start Wed Apr 1 2020 01:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99759 * 2 1 4 4 H 1.48501 * 109.47187 * 270.00071 * 3 2 1 5 5 H 1.48494 * 109.47151 * 30.00476 * 3 2 1 6 6 H 1.48504 * 109.47045 * 150.00470 * 3 2 1 7 7 C 1.38810 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00186 * 359.97438 * 7 2 1 9 9 N 1.36942 * 120.00050 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00061 * 180.02562 * 9 7 2 11 11 H 1.09007 * 110.44081 * 34.29561 * 10 9 7 12 12 C 1.55936 * 110.60400 * 271.65814 * 10 9 7 13 13 C 1.56403 * 105.78801 * 248.81556 * 12 10 9 14 14 C 1.51002 * 101.59299 * 25.01886 * 13 12 10 15 15 H 1.08995 * 109.72548 * 69.24432 * 14 13 12 16 16 C 1.50319 * 124.69900 * 204.34235 * 14 13 12 17 17 N 1.49206 * 104.33274 * 145.19490 * 16 14 13 18 18 C 1.34777 * 126.06302 * 172.12773 * 17 16 14 19 19 O 1.21578 * 120.00356 * 175.90835 * 18 17 16 20 20 C 1.47604 * 119.99738 * 355.90788 * 18 17 16 21 21 C 1.39754 * 120.26597 * 209.95025 * 20 18 17 22 22 C 1.37466 * 120.20213 * 179.89495 * 21 20 18 23 23 C 1.39593 * 120.43154 * 0.59855 * 22 21 20 24 24 C 1.39191 * 119.09947 * 359.37534 * 23 22 21 25 25 C 1.37305 * 120.93440 * 0.42927 * 24 23 22 26 26 C 1.51677 * 106.99381 * 180.69549 * 24 23 22 27 27 C 1.54707 * 101.89345 * 15.49434 * 26 24 23 28 28 O 1.35992 * 129.71927 * 179.05499 * 23 22 21 29 29 C 1.49705 * 107.88180 * 352.16316 * 17 16 14 30 30 C 1.50289 * 110.49287 * 156.85648 * 10 9 7 31 31 H 1.09004 * 109.99514 * 199.28154 * 30 10 9 32 32 H 0.97000 * 120.00324 * 359.97438 * 1 2 3 33 33 H 0.96995 * 120.00180 * 359.97438 * 9 7 2 34 34 H 1.08996 * 110.18797 * 7.89711 * 12 10 9 35 35 H 1.09004 * 110.18720 * 129.74149 * 12 10 9 36 36 H 1.09007 * 111.00524 * 266.94226 * 13 12 10 37 37 H 1.09000 * 111.03323 * 143.11313 * 13 12 10 38 38 H 1.08999 * 111.27354 * 26.18946 * 16 14 13 39 39 H 1.09008 * 109.95890 * 263.54647 * 16 14 13 40 40 H 1.08003 * 119.89738 * 0.16455 * 21 20 18 41 41 H 1.08008 * 119.78748 * 180.34554 * 22 21 20 42 42 H 1.08005 * 120.06606 * 179.75850 * 25 24 23 43 43 H 1.08995 * 110.94117 * 133.63855 * 26 24 23 44 44 H 1.08997 * 110.94498 * 257.30569 * 26 24 23 45 45 H 1.09000 * 110.74338 * 92.96199 * 27 26 24 46 46 H 1.09004 * 110.73843 * 216.11574 * 27 26 24 47 47 H 1.08997 * 110.84196 * 216.67125 * 29 17 16 48 48 H 1.08994 * 111.01538 * 93.13497 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0022 11 1 3.5716 -3.2220 -0.5780 12 6 4.3506 -2.9681 1.4564 13 6 5.8897 -2.8404 1.7033 14 6 6.2660 -1.7577 0.7203 15 1 5.8480 -0.8048 1.0447 16 6 7.6393 -1.5696 0.1387 17 7 7.3890 -1.0912 -1.2523 18 6 8.3209 -0.6446 -2.1174 19 8 8.0042 -0.3500 -3.2536 20 6 9.7262 -0.5133 -1.6855 21 6 10.5498 0.4619 -2.2546 22 6 11.8578 0.5845 -1.8497 23 6 12.3799 -0.2698 -0.8771 24 6 11.5546 -1.2386 -0.3135 25 6 10.2456 -1.3669 -0.7077 26 6 12.3865 -1.9898 0.7084 27 6 13.5970 -1.0439 0.8915 28 8 13.6342 -0.3285 -0.3547 29 6 5.9190 -1.1943 -1.5163 30 6 5.4961 -2.2788 -0.5559 31 1 5.9075 -3.2375 -0.8719 32 1 -0.4850 0.8400 0.0004 33 1 3.8646 -0.3621 -0.0014 34 1 3.8033 -2.3423 2.1613 35 1 4.0389 -4.0080 1.5549 36 1 6.4016 -3.7743 1.4707 37 1 6.0971 -2.5281 2.7268 38 1 8.1941 -2.5077 0.1231 39 1 8.1839 -0.8154 0.7070 40 1 10.1562 1.1240 -3.0116 41 1 12.4868 1.3442 -2.2901 42 1 9.6188 -2.1262 -0.2638 43 1 11.8401 -2.1089 1.6439 44 1 12.7027 -2.9572 0.3182 45 1 13.4304 -0.3605 1.7242 46 1 14.5138 -1.6146 1.0398 47 1 5.7303 -1.4939 -2.5472 48 1 5.4141 -0.2557 -1.2882 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026361266.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:20 Heat of formation + Delta-G solvation = -13.333994 kcal Electronic energy + Delta-G solvation = -30034.196155 eV Core-core repulsion = 26054.820038 eV Total energy + Delta-G solvation = -3979.376117 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.31307 -41.74844 -40.10248 -38.03871 -36.86665 -35.11695 -33.73999 -33.01828 -32.17928 -30.44329 -30.14611 -29.98864 -27.16575 -25.54742 -24.81140 -24.32932 -23.32069 -22.84298 -21.17329 -20.60663 -20.51243 -19.77730 -18.54147 -18.15284 -17.89550 -17.37706 -17.05410 -16.73149 -16.25447 -16.04469 -15.79824 -15.63230 -15.24414 -14.93271 -14.73520 -14.50019 -14.24843 -14.06249 -14.04149 -13.90487 -13.60511 -13.56302 -13.40347 -13.26640 -12.94763 -12.72146 -12.61349 -12.34396 -12.24283 -12.00688 -11.91432 -11.82840 -11.74907 -11.61884 -11.42524 -11.10924 -10.98184 -10.89441 -10.02739 -9.86338 -9.29253 -9.22378 -8.02788 -5.33956 -0.20586 0.22506 1.31667 1.35966 1.41102 1.59466 1.72992 2.24982 2.45103 2.64019 2.91110 3.29513 3.31222 3.48387 3.59113 3.62983 3.78304 3.84464 3.91746 4.09978 4.15502 4.19634 4.22056 4.26012 4.33259 4.42798 4.47778 4.54054 4.61067 4.66007 4.69161 4.81334 4.83471 4.87641 4.90313 4.92941 4.97688 4.98401 5.10480 5.15100 5.22152 5.22935 5.29495 5.35801 5.42426 5.43979 5.63421 5.81528 6.06802 6.22727 6.37507 6.97641 7.08523 7.86248 8.02655 9.19096 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.002807 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.708351 B = 9972.228411 C =10726.265272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.061 4.061 3 Si 0.941 3.059 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.255 1.255 7 C -0.219 4.219 8 H 0.063 0.937 9 N -0.746 5.746 10 C 0.187 3.813 11 H 0.051 0.949 12 C -0.140 4.140 13 C -0.080 4.080 14 C -0.118 4.118 15 H 0.062 0.938 16 C 0.120 3.880 17 N -0.618 5.618 18 C 0.573 3.427 19 O -0.588 6.588 20 C -0.173 4.173 21 C -0.039 4.039 22 C -0.151 4.151 23 C 0.119 3.881 24 C -0.183 4.183 25 C -0.042 4.042 26 C -0.104 4.104 27 C 0.042 3.958 28 O -0.319 6.319 29 C 0.128 3.872 30 C -0.122 4.122 31 H 0.109 0.891 32 H 0.256 0.744 33 H 0.362 0.638 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.134 0.866 41 H 0.148 0.852 42 H 0.163 0.837 43 H 0.119 0.881 44 H 0.105 0.895 45 H 0.091 0.909 46 H 0.133 0.867 47 H 0.066 0.934 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.336 -6.897 6.483 33.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.253 4.253 3 Si 0.770 3.230 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.180 1.180 7 C -0.350 4.350 8 H 0.081 0.919 9 N -0.390 5.390 10 C 0.078 3.922 11 H 0.069 0.931 12 C -0.180 4.180 13 C -0.118 4.118 14 C -0.137 4.137 15 H 0.080 0.920 16 C 0.000 4.000 17 N -0.351 5.351 18 C 0.364 3.636 19 O -0.470 6.470 20 C -0.176 4.176 21 C -0.058 4.058 22 C -0.170 4.170 23 C 0.073 3.927 24 C -0.184 4.184 25 C -0.060 4.060 26 C -0.141 4.141 27 C -0.031 4.031 28 O -0.233 6.233 29 C 0.006 3.994 30 C -0.142 4.142 31 H 0.127 0.873 32 H 0.065 0.935 33 H 0.195 0.805 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.129 0.871 39 H 0.109 0.891 40 H 0.152 0.848 41 H 0.166 0.834 42 H 0.180 0.820 43 H 0.137 0.863 44 H 0.123 0.877 45 H 0.109 0.891 46 H 0.151 0.849 47 H 0.084 0.916 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 32.250 -6.718 5.776 33.445 hybrid contribution -0.746 1.564 -0.483 1.799 sum 31.504 -5.155 5.293 32.359 Atomic orbital electron populations 1.69852 1.06894 1.26351 1.60340 1.25353 0.95921 1.00592 1.03417 0.85621 0.78764 0.80943 0.77710 1.21382 1.22170 1.17961 1.19061 0.82659 0.93336 1.39926 0.91928 1.42818 1.02326 1.03826 1.90011 1.20414 0.89475 0.87329 0.94968 0.93057 1.23632 0.96601 1.00982 0.96828 1.21693 0.94096 0.97689 0.98319 1.22277 0.94747 1.00418 0.96241 0.91957 1.21841 0.96801 1.01264 0.80075 1.49790 1.06756 1.63364 1.15234 1.18274 0.85466 0.76110 0.83740 1.90767 1.82593 1.52836 1.20770 1.19581 0.92710 1.02617 1.02709 1.20949 0.92187 0.95992 0.96669 1.20317 0.95054 1.01199 1.00386 1.20076 0.84638 0.93708 0.94264 1.21049 0.94843 0.99245 1.03268 1.21059 0.94245 0.97513 0.93168 1.21940 0.94262 0.99125 0.98771 1.24235 1.01140 0.93912 0.83842 1.86793 1.24522 1.74401 1.37556 1.21277 0.79666 0.98725 0.99745 1.22371 0.97083 0.99025 0.95685 0.87312 0.93507 0.80465 0.93272 0.90886 0.88381 0.90078 0.87075 0.89145 0.84811 0.83422 0.81971 0.86259 0.87651 0.89114 0.84910 0.91588 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.26 13.97 21.65 0.30 -62.96 16 2 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 3 Si 0.94 46.49 27.73 68.60 1.90 48.39 16 4 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 5 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16 6 H -0.25 -11.38 6.52 99.48 0.65 -10.73 16 7 C -0.22 -12.18 10.45 84.03 0.88 -11.30 16 8 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 9 N -0.75 -33.34 4.64 -322.26 -1.50 -34.84 16 10 C 0.19 6.38 3.45 45.13 0.16 6.53 16 11 H 0.05 1.88 8.10 -2.38 -0.02 1.86 16 12 C -0.14 -3.90 6.74 32.80 0.22 -3.68 16 13 C -0.08 -1.45 6.70 31.13 0.21 -1.25 16 14 C -0.12 -2.56 2.71 -10.57 -0.03 -2.59 16 15 H 0.06 1.71 7.68 -2.39 -0.02 1.69 16 16 C 0.12 2.11 4.95 84.99 0.42 2.53 16 17 N -0.62 -16.45 3.43 -818.82 -2.81 -19.25 16 18 C 0.57 17.26 7.63 86.72 0.66 17.92 16 19 O -0.59 -22.89 17.03 -3.96 -0.07 -22.96 16 20 C -0.17 -4.05 5.72 -20.06 -0.11 -4.16 16 21 C -0.04 -0.88 9.57 22.45 0.21 -0.66 16 22 C -0.15 -2.85 10.05 22.41 0.23 -2.63 16 23 C 0.12 2.11 7.04 22.83 0.16 2.27 16 24 C -0.18 -2.66 6.26 -19.54 -0.12 -2.78 16 25 C -0.04 -0.69 8.34 22.43 0.19 -0.51 16 26 C -0.10 -0.68 7.12 30.74 0.22 -0.46 16 27 C 0.04 0.29 8.00 72.56 0.58 0.87 16 28 O -0.32 -5.03 11.09 -93.46 -1.04 -6.06 16 29 C 0.13 4.05 6.50 85.07 0.55 4.60 16 30 C -0.12 -3.29 2.63 -10.62 -0.03 -3.32 16 31 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 32 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 33 H 0.36 16.01 3.99 -92.71 -0.37 15.64 16 34 H 0.05 1.66 7.99 -2.39 -0.02 1.64 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.11 1.21 6.15 -2.39 -0.01 1.20 16 39 H 0.09 1.37 7.60 -2.38 -0.02 1.35 16 40 H 0.13 3.10 7.92 -2.91 -0.02 3.07 16 41 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 42 H 0.16 1.88 4.45 -2.91 -0.01 1.86 16 43 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.13 0.24 8.14 -2.38 -0.02 0.22 16 47 H 0.07 2.28 8.06 -2.39 -0.02 2.26 16 48 H 0.05 1.86 6.89 -2.39 -0.02 1.85 16 Total: -1.00 -78.51 376.38 2.22 -76.29 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.56 Total: 23.15 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 4.86 Total: -1.76 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -4.00 Total: -117.05 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -1.10 Total: -29.02 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.90 Total: 48.39 kcal Total: -78.51 2.22 -76.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026361266.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.955 kcal (2) G-P(sol) polarization free energy of solvation -78.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds